Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,903,267 |
(A)9→10 |
intergenic (‑42/+92) |
bglF ← / ← bglG |
PTS system beta‑glucosides‑specific enzyme IIABC component/BglG |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,903,258 | 1 | . | A | 95.6%
| 744.6
/ 20.4
| 205 | intergenic (‑33/+101) | bglF/bglG | PTS system beta‑glucosides‑specific enzyme IIABC component/BglG |
| Reads supporting (aligned to +/- strand): ref base . (4/5); new base A (106/90); total (110/95) |
| Fisher's exact test for biased strand distribution p-value = 7.36e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
Only 100 of 247 total aligned reads displayed.
ACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑C‑‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTA > NC_000913/3903166‑3903350
|
aCTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTc‑c < 2:2616983/93‑1 (MQ=255)
tCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑C‑‑aa < 1:2034745/93‑1 (MQ=255)
cacaATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑C‑‑aaa < 1:3951745/93‑1 (MQ=255)
cacaATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑C‑‑aaa > 1:5297167/1‑93 (MQ=255)
cacaATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑C‑‑aaa > 1:5437834/1‑93 (MQ=255)
aaTGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑C‑‑aaaaca > 2:22978/1‑91 (MQ=255)
aaTGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑C‑‑aaaaaa > 1:4678565/1‑93 (MQ=255)
gTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑C‑‑aaaaaaaaa > 2:1428811/1‑93 (MQ=255)
ttATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑C‑‑AAAAAAAAAc < 2:5012601/93‑1 (MQ=255)
tATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑C‑‑aaaaaaaaaac > 2:1455975/1‑91 (MQ=255)
ttCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑C‑‑aaaaaaaaaacc < 1:1166456/92‑4 (MQ=255)
tCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑C‑‑aaaaaaaaaacct < 2:5762746/93‑5 (MQ=255)
tCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑C‑‑aaaaaaaaaacct > 1:2564880/1‑89 (MQ=255)
tGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGa > 2:1375182/1‑93 (MQ=255)
tGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGa < 1:5350011/93‑1 (MQ=255)
tGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGa > 1:4079379/1‑93 (MQ=255)
gcgcCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGaa < 2:844266/93‑1 (MQ=255)
gcCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGaaaa < 1:1559836/93‑1 (MQ=255)
cccccGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGaaaaa < 2:2766471/93‑1 (MQ=255)
cccccGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGaaaaa > 2:257292/1‑93 (MQ=255)
ccccGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGaaaaaa < 2:4763270/93‑1 (MQ=255)
cccGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGaaaaaaa < 2:4122042/93‑1 (MQ=255)
cccGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGaaaaaaa < 2:5699987/93‑1 (MQ=255)
gACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACgg > 1:3161069/1‑93 (MQ=255)
cTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTGGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGcc < 2:2022625/93‑1 (MQ=255)
tCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCt > 2:2228099/1‑93 (MQ=255)
tCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCt > 1:2728739/1‑93 (MQ=255)
cTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGa < 1:2968258/93‑1 (MQ=255)
cTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGa > 1:2458554/1‑93 (MQ=255)
tGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGAc < 2:3849128/93‑1 (MQ=255)
tGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGAc < 2:3576789/93‑1 (MQ=255)
cGACTATTTTTCTGGCTACCTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGt < 2:179118/93‑1 (MQ=255)
gACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑C‑‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGa > 1:2748982/1‑93 (MQ=255)
aCTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGa > 2:1756510/1‑93 (MQ=255)
aCTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGa > 2:3466591/1‑93 (MQ=255)
aCTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGa > 2:317321/1‑93 (MQ=255)
tATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAGAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAAt < 1:4431290/93‑1 (MQ=255)
tATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAAt > 1:4602831/1‑93 (MQ=255)
tATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAAt > 2:4552262/1‑93 (MQ=255)
tATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGGGAAt > 1:707142/1‑93 (MQ=255)
aTTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATc > 2:2145639/1‑93 (MQ=255)
aTTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATc < 2:607102/93‑1 (MQ=255)
tttttCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CAAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATc > 1:2310794/1‑93 (MQ=255)
tttttCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCa > 1:6210241/1‑93 (MQ=255)
ttCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGc < 1:5255886/93‑1 (MQ=255)
tCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCa < 1:5154058/93‑1 (MQ=255)
tGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAAt > 1:5645408/1‑93 (MQ=255)
cTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCAA‑‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAAtttt < 1:1307403/93‑1 (MQ=255)
aaCTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAAtttttt > 2:1617042/1‑93 (MQ=255)
aaCTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACATGAAAAAAACGGCCTGACGCGGATCAAGCAAtttttt > 2:203589/1‑93 (MQ=255)
aCTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAAttttttt < 2:2472571/93‑1 (MQ=255)
aCTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAAttttttt < 1:1960831/93‑1 (MQ=255)
cTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTc < 2:2954096/93‑1 (MQ=255)
tCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CAAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTc > 2:6122693/1‑93 (MQ=255)
tCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCa < 1:817607/93‑1 (MQ=255)
cccGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTcc < 2:1929457/92‑2 (MQ=255)
ccGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAAAGGCCTGACGTGAATCAAGCAATTTTTTTCAg > 1:3540318/1‑93 (MQ=255)
cGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAgg > 2:2865386/1‑93 (MQ=255)
gTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGt < 2:5969312/93‑1 (MQ=255)
gTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGt > 2:5455500/1‑93 (MQ=255)
tCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGtt < 1:4726809/93‑1 (MQ=255)
tCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGtt > 2:652846/1‑93 (MQ=255)
tCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGtt > 1:3315049/1‑93 (MQ=255)
cATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGttt < 1:4042085/93‑1 (MQ=255)
cATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGttt > 1:1754281/1‑93 (MQ=255)
aTAACTTGCCCTCTACCGCTTTGCGGCAAAACTCAA‑‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGtttt < 1:3830739/93‑1 (MQ=255)
aTAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGtttt > 2:683048/1‑93 (MQ=255)
aTAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGtttt < 1:1634520/93‑1 (MQ=255)
tAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTg > 1:3473074/1‑93 (MQ=255)
tAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTg < 2:3804289/93‑1 (MQ=255)
aaCTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGc > 2:3985626/1‑93 (MQ=255)
cTTGCCCTCTACCGCTTTGCGGCAAAACTC‑CAAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGcc > 1:4503560/1‑93 (MQ=255)
gCCCTCTACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCt < 1:959240/93‑1 (MQ=255)
tctcCCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGt < 1:2155113/93‑1 (MQ=255)
tctACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGt < 1:3657988/93‑1 (MQ=255)
tctACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGt > 1:2929906/1‑93 (MQ=255)
tACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGc > 1:2122006/1‑93 (MQ=255)
tACCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGc > 2:36673/1‑93 (MQ=255)
aCCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCg < 1:4527534/93‑1 (MQ=255)
aCCGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCg > 1:5569794/1‑93 (MQ=255)
cGCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGGTTTGCCCGCTTAGTGCGGt < 1:5937722/93‑1 (MQ=255)
gCTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTa > 2:4501472/1‑93 (MQ=255)
cTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTaa < 2:1176326/93‑1 (MQ=255)
cTTTGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTaa > 2:5335586/1‑93 (MQ=255)
tttGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAAc > 1:733464/1‑93 (MQ=255)
ttGCGGCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACa < 2:827100/93‑1 (MQ=255)
ggCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATcc < 1:899783/93‑1 (MQ=255)
ggCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATcc > 2:2388927/1‑93 (MQ=255)
gCAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCt < 2:4678565/93‑1 (MQ=255)
cAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCtt < 1:108811/93‑1 (MQ=255)
cAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCtt < 1:5951465/93‑1 (MQ=255)
cAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCtt > 2:3080937/1‑93 (MQ=255)
cAAAACTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCtt < 1:4806421/93‑1 (MQ=255)
aaaaCTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCttt < 2:4454982/93‑1 (MQ=255)
aaaaCTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAAAAATCCttt > 2:4828026/1‑93 (MQ=255)
aaCTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTAc < 1:1834477/93‑1 (MQ=255)
aCTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACt > 2:5220437/1‑93 (MQ=255)
aCTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACt > 1:4983835/1‑93 (MQ=255)
aCTC‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACt > 2:419270/1‑93 (MQ=255)
c‑‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGta > 1:4310366/1‑93 (MQ=255)
|
ACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTC‑C‑‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTA > NC_000913/3903166‑3903350
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑C‑‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTC > NC_000913/3903174‑3903360
|
TGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑C‑‑AAAAAAAAA > SRR4302533.175298/1‑94 (MQ=60)
TATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑C‑‑AAAAAAAAAacc > SRR4302533.1303412/1‑91 (MQ=60)
TATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑C‑‑AAAAAAAAAacc < SRR4302533.2241968/94‑4 (MQ=60)
TTCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCT < SRR4302533.1173452/94‑1 (MQ=60)
ATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCT > SRR4302533.2580662/1‑94 (MQ=60)
TCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTG < SRR4302533.1458891/94‑1 (MQ=60)
TCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑C‑‑AAAAAAAAACCTGA > SRR4302533.4400903/1‑94 (MQ=60)
CTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGA > SRR4302533.4104213/1‑94 (MQ=60)
CTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGA < SRR4302533.1751364/94‑1 (MQ=60)
TGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAA > SRR4302533.4869842/1‑94 (MQ=60)
TGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAA < SRR4302533.5382111/94‑1 (MQ=60)
CGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAA < SRR4302533.6187244/94‑1 (MQ=60)
CGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAA > SRR4302533.936282/1‑94 (MQ=60)
GCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAA < SRR4302533.1569232/94‑1 (MQ=60)
CCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAA < SRR4302533.4624485/94‑1 (MQ=60)
CCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAA < SRR4302533.5884249/94‑1 (MQ=60)
CCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAA > SRR4302533.2535619/1‑94 (MQ=60)
CCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAAC < SRR4302533.2762959/94‑1 (MQ=60)
CCCGACTCCTGCGACAATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAAC < SRR4302533.739506/94‑1 (MQ=60)
CCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACG < SRR4302533.4699748/94‑1 (MQ=60)
CGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGG < SRR4302533.2570175/94‑1 (MQ=60)
CGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGG > SRR4302533.3046876/1‑94 (MQ=60)
CGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGG > SRR4302533.3180521/1‑94 (MQ=60)
GACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGC > SRR4302533.1817809/1‑94 (MQ=60)
ACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCC < SRR4302533.2007250/94‑1 (MQ=60)
CTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑C‑‑AAAAAAAAACCTGAAAAAAACGGCCT > SRR4302533.1855946/1‑94 (MQ=60)
CTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCT > SRR4302533.2745478/1‑94 (MQ=60)
TCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTG < SRR4302533.3505036/94‑1 (MQ=60)
TCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTG > SRR4302533.2981834/1‑94 (MQ=60)
TCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTG < SRR4302533.2764134/94‑1 (MQ=60)
TCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTG < SRR4302533.720302/94‑1 (MQ=60)
CCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACG‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTG < SRR4302533.1949945/94‑1 (MQ=60)
CCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTTCCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGA < SRR4302533.2627385/94‑1 (MQ=60)
CCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGA > SRR4302533.4315522/1‑94 (MQ=60)
CCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGA < SRR4302533.4023794/94‑1 (MQ=60)
CCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGA > SRR4302533.528773/1‑94 (MQ=60)
CCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGA > SRR4302533.2473723/1‑94 (MQ=60)
CTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGAC < SRR4302533.2986405/94‑1 (MQ=60)
TGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACG < SRR4302533.3270529/94‑1 (MQ=60)
CGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTG < SRR4302533.4087806/94‑1 (MQ=60)
CGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑C‑‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGA > SRR4302533.2765837/1‑94 (MQ=60)
CAACTATTTTTCTGCCTAACTCCTTCATACCTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTG < SRR4302533.3407917/94‑1 (MQ=60)
ACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAA > SRR4302533.4018486/1‑94 (MQ=60)
CTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAAT > SRR4302533.4630716/1‑94 (MQ=60)
CTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAAT > SRR4302533.2057135/1‑94 (MQ=60)
CTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAAT > SRR4302533.5982244/1‑94 (MQ=60)
CTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGGGAAT > SRR4302533.711318/1‑94 (MQ=60)
TATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAGAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATC < SRR4302533.4458079/94‑1 (MQ=60)
ATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CAAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATC > SRR4302533.2325112/1‑94 (MQ=60)
ATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCA > SRR4302533.1630554/1‑94 (MQ=60)
ATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCA > SRR4302533.6247487/1‑94 (MQ=60)
TTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG < SRR4302533.5886825/94‑1 (MQ=60)
TTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CA < SRR4302533.5287455/94‑1 (MQ=60)
TCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAA < SRR4302533.5185187/94‑1 (MQ=60)
CTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAAT > SRR4302533.5679538/1‑94 (MQ=60)
TGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CCATT > SRR4302533.5242657/1‑94 (MQ=60)
GCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTT > SRR4302533.4693787/1‑94 (MQ=60)
CTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑CAA‑‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTT < SRR4302533.1315254/94‑1 (MQ=60)
TAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTT > SRR4302533.2225099/1‑94 (MQ=60)
ACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTC < SRR4302533.1972799/94‑1 (MQ=60)
ACGCCGTAATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑C‑‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCA < SRR4302533.5502996/94‑1 (MQ=60)
CTCCGTCATAACTTGCCCTCTCCCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCA < SRR4302533.6061580/94‑1 (MQ=60)
TCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAG < SRR4302533.822396/94‑1 (MQ=60)
TCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAAAGGCCTGACGTGAATCAAG‑CAATTTTTTTCAG > SRR4302533.3562132/1‑94 (MQ=60)
CCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGG > SRR4302533.1656458/1‑94 (MQ=60)
CGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGT > SRR4302533.3570135/1‑94 (MQ=60)
GTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTT > SRR4302533.3335515/1‑94 (MQ=60)
GTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTT < SRR4302533.897905/94‑1 (MQ=60)
TCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTT < SRR4302533.4755466/94‑1 (MQ=60)
TCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTT > SRR4302533.1764965/1‑94 (MQ=60)
TCATAACTTGCCCTCTACCGCTTTGCGCCAAACCT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTT < SRR4302533.237153/94‑1 (MQ=60)
CATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTT > SRR4302533.1133941/1‑94 (MQ=60)
CATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTT > SRR4302533.1333474/1‑94 (MQ=60)
CATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTT < SRR4302533.4066686/94‑1 (MQ=60)
CATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTT > SRR4302533.3739303/1‑94 (MQ=60)
ATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑CAA‑‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTG < SRR4302533.3854157/94‑1 (MQ=60)
ATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTG < SRR4302533.1644421/94‑1 (MQ=60)
ATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTG < SRR4302533.2144081/94‑1 (MQ=60)
ATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTG > SRR4302533.436497/1‑94 (MQ=60)
ATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTG > SRR4302533.3494505/1‑94 (MQ=60)
ATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTG > SRR4302533.4548572/1‑94 (MQ=60)
TAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGC < SRR4302533.519768/94‑1 (MQ=60)
TAACCTGCCCTCTCTCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTCTTTCAGGTTTTGC < SRR4302533.3173539/94‑1 (MQ=60)
ACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CAAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCC > SRR4302533.4530842/1‑94 (MQ=60)
CTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCG > SRR4302533.4079302/1‑94 (MQ=60)
CTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCG < SRR4302533.517791/94‑1 (MQ=60)
GCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTT > SRR4302533.4534119/1‑94 (MQ=60)
GCCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTT < SRR4302533.964880/94‑1 (MQ=60)
CCCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTA > SRR4302533.5330066/1‑94 (MQ=60)
CCTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAG > SRR4302533.72089/1‑94 (MQ=60)
CTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGT > SRR4302533.2947828/1‑94 (MQ=60)
CTCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGT > SRR4302533.3633131/1‑94 (MQ=60)
TCTCCCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTG < SRR4302533.2168383/94‑1 (MQ=60)
TCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACTTGAAAAAAACGGCCGGAC‑TGAATCCAGCCAATTTTTTTCGGATTTTGCCCctttgttc > SRR4302533.1989416/1‑86 (MQ=32)
TCTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTG < SRR4302533.3680481/94‑1 (MQ=60)
CTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGC > SRR4302533.2135087/1‑94 (MQ=60)
CTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGC > SRR4302533.5438442/1‑94 (MQ=60)
CTACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGC > SRR4302533.5378355/1‑94 (MQ=60)
TACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCG > SRR4302533.5603459/1‑94 (MQ=60)
TACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCG > SRR4302533.2835372/1‑94 (MQ=60)
ACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGG < SRR4302533.4714542/94‑1 (MQ=60)
ACCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGG < SRR4302533.4554950/94‑1 (MQ=60)
CCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGT < SRR4302533.6274246/94‑1 (MQ=60)
CCGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGT < SRR4302533.5642288/94‑1 (MQ=60)
CGCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGGTTTGCCCGCTTAGTGCGGTA < SRR4302533.5973622/94‑1 (MQ=60)
GCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAA > SRR4302533.4471048/1‑94 (MQ=60)
GCTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAA < SRR4302533.4936379/94‑1 (MQ=60)
CTTTGCGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAAC > SRR4302533.737779/1‑94 (MQ=60)
TGGCGCCAAAACT‑C‑A‑‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAAT < SRR4302533.4792532/94‑1 (MQ=60)
CGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCC < SRR4302533.341710/94‑1 (MQ=60)
CGGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCC < SRR4302533.5511215/94‑1 (MQ=60)
GGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCT > SRR4302533.876534/1‑94 (MQ=60)
GGCAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCT < SRR4302533.905063/94‑1 (MQ=60)
GGCAAAACT‑C‑C‑‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTT > SRR4302533.3882915/1‑94 (MQ=60)
CAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTT < SRR4302533.109500/94‑1 (MQ=60)
CAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTT < SRR4302533.5987462/94‑1 (MQ=60)
CAAAACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTT < SRR4302533.4835524/94‑1 (MQ=60)
AACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACT > SRR4302533.5014054/1‑94 (MQ=60)
AACT‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACT < SRR4302533.1845673/94‑1 (MQ=60)
T‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAG < SRR4302533.4812541/94‑1 (MQ=60)
T‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAG > SRR4302533.3107172/1‑94 (MQ=60)
T‑C‑CA‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAG > SRR4302533.3011506/1‑94 (MQ=60)
C‑C‑‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTA > SRR4302533.4336314/1‑94 (MQ=60)
C‑A‑‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTA < SRR4302533.3940645/94‑1 (MQ=60)
C‑A‑‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTA > SRR4302533.499907/1‑94 (MQ=60)
ccaAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGT > SRR4302533.1432124/4‑94 (MQ=60)
AAAAAAAAACCTGAAAAAAACGGCCTGTCGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAAT > SRR4302533.4415930/1‑94 (MQ=60)
AAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATA < SRR4302533.2325288/94‑1 (MQ=60)
AAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAA > SRR4302533.2070486/1‑94 (MQ=60)
AAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAA > SRR4302533.2019781/1‑94 (MQ=60)
AAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAA > SRR4302533.5504055/1‑94 (MQ=60)
AAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAA > SRR4302533.4037565/1‑94 (MQ=60)
AAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAAT > SRR4302533.1553969/1‑94 (MQ=60)
AAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATA > SRR4302533.2061148/1‑94 (MQ=60)
AAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATA < SRR4302533.743727/94‑1 (MQ=60)
AAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATGATAT < SRR4302533.6341239/94‑1 (MQ=60)
AAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATAT > SRR4302533.4291046/1‑94 (MQ=60)
AAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATAT < SRR4302533.2793521/94‑1 (MQ=60)
AAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATAT > SRR4302533.4441190/1‑94 (MQ=60)
AAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATT < SRR4302533.990579/94‑1 (MQ=60)
ACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTC > SRR4302533.2920906/1‑94 (MQ=60)
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TGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACT‑C‑C‑‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAG‑CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTC > NC_000913/3903174‑3903360
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
