Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,938,374	C→T	D145N (GAC→AAC)	yiePs ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,938,374	0	C	T	100.0%	980.2 / NA	260	D145N (GAC→AAC)	yiePs	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (137/123); total (137/123)

Only 100 of 261 total aligned reads displayed.

GCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAGA  >  NC_000913/3938284‑3938463

 cgcCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCt                                                                                        <  2:5745924/93‑1 (MQ=255)

 cgcCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCt                                                                                        <  2:5841884/93‑1 (MQ=255)

  gcCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTg                                                                                       <  2:4455586/93‑1 (MQ=255)

  gcCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTg                                                                                       >  2:1451740/1‑93 (MQ=255)

   ccTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTgg                                                                                      >  2:6006953/1‑93 (MQ=255)

    cTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGt                                                                                     >  1:2128457/1‑93 (MQ=255)

     tGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTa                                                                                    >  1:2081753/1‑93 (MQ=255)

     tGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTa                                                                                    >  1:1985462/1‑93 (MQ=255)

      gACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTaa                                                                                   >  2:4713931/1‑93 (MQ=255)

      gACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTaa                                                                                   >  1:1484764/1‑93 (MQ=255)

        cAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAAtt                                                                                 >  2:3375716/1‑93 (MQ=255)

        cAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAAtt                                                                                 >  2:4217367/1‑93 (MQ=255)

        cAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAAtt                                                                                 <  1:323108/93‑1 (MQ=255)

        cAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAAtt                                                                                 <  1:252506/93‑1 (MQ=255)

          aGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGa                                                                               <  2:3130530/93‑1 (MQ=255)

          aGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGa                                                                               <  1:1194704/93‑1 (MQ=255)

          aGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGa                                                                               <  2:1525344/93‑1 (MQ=255)

          aGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGa                                                                               <  1:5449799/93‑1 (MQ=255)

           gCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGAc                                                                              >  2:819308/1‑93 (MQ=255)

            cTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACg                                                                             <  2:5608612/93‑1 (MQ=255)

            cTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACg                                                                             <  1:2386200/93‑1 (MQ=255)

              ttAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTg                                                                           >  2:3812891/1‑93 (MQ=255)

               tAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGa                                                                          <  2:401441/93‑1 (MQ=255)

                  aTGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGaagt                                                                       >  2:4041823/1‑93 (MQ=255)

                      cgcgTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGaagtaagt                                                                   <  2:1138601/93‑1 (MQ=255)

                       gcgTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAgtg                                                                  >  1:170788/1‑93 (MQ=255)

                          tCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGa                                                               <  2:540864/93‑1 (MQ=255)

                            gCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATa                                                             >  2:225034/1‑93 (MQ=255)

                            gCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATa                                                             >  1:402182/1‑93 (MQ=255)

                            gCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATa                                                             <  1:1066397/93‑1 (MQ=255)

                            gCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATa                                                             <  1:136243/93‑1 (MQ=255)

                            gCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATa                                                             <  1:3157222/93‑1 (MQ=255)

                             ccATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATaa                                                            <  2:3640421/93‑1 (MQ=255)

                              cATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATaaa                                                           >  2:1334088/1‑93 (MQ=255)

                              cATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATaaa                                                           <  2:3486016/93‑1 (MQ=255)

                              cATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATaaa                                                           >  2:3603282/1‑93 (MQ=255)

                                tCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAAcc                                                         >  1:3560189/1‑93 (MQ=255)

                                  gCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGa                                                       >  1:382018/1‑93 (MQ=255)

                                    tttGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAAt                                                     >  1:3747922/1‑93 (MQ=255)

                                    tttGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAAt                                                     >  2:2169206/1‑93 (MQ=255)

                                        gATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATCAACCGAATGGaa                                                 <  1:3405145/93‑1 (MQ=255)

                                        gATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGaa                                                 <  1:2883310/93‑1 (MQ=255)

                                        gATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGaa                                                 >  1:424621/1‑93 (MQ=255)

                                         aTAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAAt                                                <  2:742856/93‑1 (MQ=255)

                                         aTAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAAt                                                <  1:4280917/93‑1 (MQ=255)

                                          tAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATa                                               <  1:2917433/93‑1 (MQ=255)

                                          tAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATa                                               <  2:3065669/93‑1 (MQ=255)

                                          tAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAACTGTGATAAACCGAATGGAATa                                               <  1:6252081/93‑1 (MQ=255)

                                           aaTCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAg                                              <  1:3849167/93‑1 (MQ=255)

                                            aTCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGc                                             >  1:6172875/1‑93 (MQ=255)

                                             tCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCg                                            <  1:1541721/93‑1 (MQ=255)

                                              cGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGa                                           <  2:4782223/93‑1 (MQ=255)

                                               gCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAg                                          >  2:1369899/1‑93 (MQ=255)

                                                cATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAgg                                         <  2:5320079/93‑1 (MQ=255)

                                                 aTCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGc                                        >  1:4496682/1‑93 (MQ=255)

                                                    gACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGaa                                     >  1:4891447/1‑93 (MQ=255)

                                                    caCAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGaa                                     <  2:269191/92‑1 (MQ=255)

                                                      cAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATg                                   >  1:103646/1‑93 (MQ=255)

                                                      cAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATg                                   >  1:3487849/1‑93 (MQ=255)

                                                       aaTCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGa                                  >  2:6240819/1‑93 (MQ=255)

                                                        aTCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAg                                 <  2:93416/93‑1 (MQ=255)

                                                         tCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAgg                                <  1:387561/93‑1 (MQ=255)

                                                         tCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAgg                                <  2:3839023/93‑1 (MQ=255)

                                                          cGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGt                               >  1:114486/1‑93 (MQ=255)

                                                           gCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTc                              >  2:2378834/1‑93 (MQ=255)

                                                              tGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCaaa                           >  2:1007057/1‑93 (MQ=255)

                                                              tGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCaaa                           >  1:735514/1‑93 (MQ=255)

                                                                aTGCAGATCCAGCTTTATCACTGTGCTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCaaaaa                         >  1:2219770/1‑93 (MQ=255)

                                                                  gCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACg                       <  1:1295758/93‑1 (MQ=255)

                                                                  gCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACg                       <  2:6285740/93‑1 (MQ=255)

                                                                    aGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGa                     >  2:3437422/1‑93 (MQ=255)

                                                                     gATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGAt                    <  1:26700/93‑1 (MQ=255)

                                                                      aTCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGAtt                   >  1:3612435/1‑93 (MQ=255)

                                                                      aTCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGAtt                   <  2:4895563/93‑1 (MQ=255)

                                                                       tCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTg                  >  2:2749417/1‑93 (MQ=255)

                                                                       tCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTg                  <  1:5574885/93‑1 (MQ=255)

                                                                       tCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTg                  >  1:5201026/1‑93 (MQ=255)

                                                                       tCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTg                  <  2:5135791/93‑1 (MQ=255)

                                                                        ccAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTgg                 <  2:594845/93‑1 (MQ=255)

                                                                         cAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGgc                <  1:485700/93‑1 (MQ=255)

                                                                         cAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGgc                >  1:4060179/1‑93 (MQ=255)

                                                                         cAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGgc                >  1:573782/1‑93 (MQ=255)

                                                                          aGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGgcg               <  1:504065/93‑1 (MQ=255)

                                                                           gCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGgcgc              >  1:1881883/1‑93 (MQ=255)

                                                                           gCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGgcgc              <  2:3772470/93‑1 (MQ=255)

                                                                           gCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGgcgc              <  1:6085487/93‑1 (MQ=255)

                                                                            cTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCt             >  2:5463854/1‑93 (MQ=255)

                                                                             tttATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTc            >  2:5035429/1‑93 (MQ=255)

                                                                              ttATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCa           >  2:4499771/1‑93 (MQ=255)

                                                                               tATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCAt          >  1:1427679/1‑93 (MQ=255)

                                                                               tATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCAt          <  2:838558/93‑1 (MQ=255)

                                                                                aTCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCAtt         <  1:4381827/93‑1 (MQ=255)

                                                                                aTCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCAtt         >  2:2576060/1‑93 (MQ=255)

                                                                                aTCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCAtt         <  2:2826456/93‑1 (MQ=255)

                                                                                 tCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCAttt        >  1:5151152/1‑93 (MQ=255)

                                                                                  cACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTc       <  1:3163231/93‑1 (MQ=255)

                                                                                   aCTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCa      >  2:2981820/1‑93 (MQ=255)

                                                                                   aCTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCa      >  1:6240577/1‑93 (MQ=255)

                                                                                    cTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCAt     <  1:4738581/93‑1 (MQ=255)

                                                                                       tgtTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAGa  <  2:2048823/93‑1 (MQ=255)

GCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAGA  >  NC_000913/3938284‑3938463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAGATATG  >  NC_000913/3938281‑3938467

GCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTT                                                                                               <  SRR4302533.5617674/94‑1 (MQ=60)

GCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTT                                                                                               <  SRR4302533.492937/94‑1 (MQ=60)

    CGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTG                                                                                           >  SRR4302533.2924785/1‑94 (MQ=60)

      CCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGT                                                                                         <  SRR4302533.4082894/94‑1 (MQ=60)

      CCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGT                                                                                         >  SRR4302533.4241006/1‑94 (MQ=60)

      CCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGT                                                                                         <  SRR4302533.5121553/94‑1 (MQ=60)

      CCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGT                                                                                         >  SRR4302533.2141582/1‑94 (MQ=60)

       CTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTA                                                                                        <  SRR4302533.3885771/94‑1 (MQ=60)

       CTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTA                                                                                        >  SRR4302533.1997609/1‑94 (MQ=60)

       CTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTA                                                                                        >  SRR4302533.2094565/1‑94 (MQ=60)

        TGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAA                                                                                       <  SRR4302533.4493295/94‑1 (MQ=60)

        TGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAA                                                                                       >  SRR4302533.1493724/1‑94 (MQ=60)

         GACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAAT                                                                                      >  SRR4302533.1324759/1‑94 (MQ=60)

          ACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATT                                                                                     <  SRR4302533.5237126/94‑1 (MQ=60)

           CAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTG                                                                                    <  SRR4302533.254059/94‑1 (MQ=60)

           CAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTG                                                                                    <  SRR4302533.2901421/94‑1 (MQ=60)

           CAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTG                                                                                    <  SRR4302533.325079/94‑1 (MQ=60)

           CAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTG                                                                                    <  SRR4302533.3795236/94‑1 (MQ=60)

            AAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGA                                                                                   >  SRR4302533.2296073/1‑94 (MQ=60)

             AGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGAC                                                                                  <  SRR4302533.1201884/94‑1 (MQ=60)

             AGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGAC                                                                                  <  SRR4302533.5482627/94‑1 (MQ=60)

               CTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGT                                                                                >  SRR4302533.289589/1‑94 (MQ=60)

               CTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGT                                                                                <  SRR4302533.2400946/94‑1 (MQ=60)

               CTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGT                                                                                <  SRR4302533.4856321/94‑1 (MQ=60)

               CTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGT                                                                                >  SRR4302533.4282239/1‑94 (MQ=60)

                TTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTG                                                                               <  SRR4302533.3344330/94‑1 (MQ=60)

                TTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTG                                                                               >  SRR4302533.1290440/1‑94 (MQ=60)

                 TTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGA                                                                              <  SRR4302533.3611026/94‑1 (MQ=60)

                     ATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTA                                                                          <  SRR4302533.2193552/94‑1 (MQ=60)

                       GCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAG                                                                        <  SRR4302533.3867757/94‑1 (MQ=60)

                        CCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGT                                                                       <  SRR4302533.2975522/94‑1 (MQ=60)

                         CGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTG                                                                      >  SRR4302533.5498703/1‑94 (MQ=60)

                         CGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTG                                                                      >  SRR4302533.3792143/1‑94 (MQ=60)

                         CGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTG                                                                      >  SRR4302533.626788/1‑94 (MQ=60)

                         CGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTG                                                                      >  SRR4302533.2045961/1‑94 (MQ=60)

                         CGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTG                                                                      >  SRR4302533.171863/1‑94 (MQ=60)

                          GCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGT                                                                     <  SRR4302533.6218199/94‑1 (MQ=60)

                             TCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGAT                                                                  <  SRR4302533.4909542/94‑1 (MQ=60)

                             TCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGAT                                                                  <  SRR4302533.1468924/94‑1 (MQ=60)

                              CGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATA                                                                 >  SRR4302533.404606/1‑94 (MQ=60)

                              CGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATA                                                                 >  SRR4302533.268205/1‑94 (MQ=60)

                               GCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAA                                                                <  SRR4302533.3176654/94‑1 (MQ=60)

                               GCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAA                                                                <  SRR4302533.137103/94‑1 (MQ=60)

                               GCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAA                                                                <  SRR4302533.1072663/94‑1 (MQ=60)

                               GCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAA                                                                >  SRR4302533.4959250/1‑94 (MQ=60)

                                CCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAA                                                               >  SRR4302533.1644092/1‑94 (MQ=60)

                                 CATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAAC                                                              >  SRR4302533.5909959/1‑94 (MQ=60)

                                  ATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACC                                                             >  SRR4302533.3582123/1‑94 (MQ=60)

                                  ATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACC                                                             >  SRR4302533.1359338/1‑94 (MQ=60)

                                  ATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACC                                                             <  SRR4302533.4033973/94‑1 (MQ=60)

                                  ATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACC                                                             <  SRR4302533.4996734/94‑1 (MQ=60)

                                  ATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGAGTGATAAACC                                                             >  SRR4302533.1455727/1‑94 (MQ=60)

                                   TCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCG                                                            <  SRR4302533.357030/94‑1 (MQ=60)

                                   TCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCG                                                            >  SRR4302533.1511366/1‑94 (MQ=60)

                                    CGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGA                                                           >  SRR4302533.384322/1‑94 (MQ=60)

                                     GCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAA                                                          >  SRR4302533.3181176/1‑94 (MQ=60)

                                     GCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAA                                                          >  SRR4302533.340484/1‑94 (MQ=60)

                                     GCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAA                                                          >  SRR4302533.6017557/1‑94 (MQ=60)

                                      CTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAAT                                                         >  SRR4302533.3770898/1‑94 (MQ=60)

                                       TTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATG                                                        >  SRR4302533.3031164/1‑94 (MQ=60)

                                         TGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGA                                                      <  SRR4302533.2362532/94‑1 (MQ=60)

                                          GGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAA                                                     >  SRR4302533.427157/1‑94 (MQ=60)

                                          GGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAA                                                     >  SRR4302533.3763437/1‑94 (MQ=60)

                                           GATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATCAACCGAATGGAAT                                                    <  SRR4302533.3426176/94‑1 (MQ=60)

                                           GATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAAT                                                    <  SRR4302533.2901045/94‑1 (MQ=60)

                                            ATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATA                                                   <  SRR4302533.4306653/94‑1 (MQ=60)

                                            ATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATA                                                   <  SRR4302533.255359/94‑1 (MQ=60)

                                             TAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAG                                                  <  SRR4302533.2935316/94‑1 (MQ=60)

                                             TAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAG                                                  >  SRR4302533.1100430/1‑94 (MQ=60)

                                             TAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAACTGTGATAAACCGAATGGAATAG                                                  <  SRR4302533.6289479/94‑1 (MQ=60)

                                              AATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGC                                                 >  SRR4302533.6209967/1‑94 (MQ=60)

                                              AATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGC                                                 <  SRR4302533.3872672/94‑1 (MQ=60)

                                               ATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCG                                                <  SRR4302533.6281441/94‑1 (MQ=60)

                                                TCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGA                                               <  SRR4302533.1551009/94‑1 (MQ=60)

                                                TCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGA                                               <  SRR4302533.1858204/94‑1 (MQ=60)

                                                 CGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAG                                              >  SRR4302533.3560275/1‑94 (MQ=60)

                                                 CGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAG                                              <  SRR4302533.4359870/94‑1 (MQ=60)

                                                  GCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGG                                             <  SRR4302533.2497745/94‑1 (MQ=60)

                                                   CATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGC                                            <  SRR4302533.4825363/94‑1 (MQ=60)

                                                   CATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGC                                            >  SRR4302533.4523912/1‑94 (MQ=60)

                                                    ATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCG                                           >  SRR4302533.413666/1‑94 (MQ=60)

                                                      CGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAA                                         >  SRR4302533.4921083/1‑94 (MQ=60)

                                                        ACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATG                                       >  SRR4302533.460450/1‑94 (MQ=60)

                                                        ACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATG                                       >  SRR4302533.3509354/1‑94 (MQ=60)

                                                        ACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATG                                       >  SRR4302533.104294/1‑94 (MQ=60)

                                                         CAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGA                                      >  SRR4302533.2139056/1‑94 (MQ=60)

                                                         CAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGA                                      <  SRR4302533.791935/94‑1 (MQ=60)

                                                          AATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAG                                     >  SRR4302533.1062927/1‑94 (MQ=60)

                                                           ATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGG                                    <  SRR4302533.4066011/94‑1 (MQ=60)

                                                           ATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGG                                    <  SRR4302533.3892343/94‑1 (MQ=60)

                                                           ATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGG                                    >  SRR4302533.5225406/1‑94 (MQ=60)

                                                           ATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGG                                    >  SRR4302533.6163967/1‑94 (MQ=60)

                                                            TCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGT                                   <  SRR4302533.389897/94‑1 (MQ=60)

                                                            TCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGT                                   >  SRR4302533.115211/1‑94 (MQ=60)

                                                               CCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAA                                >  SRR4302533.1200245/1‑94 (MQ=60)

                                                               CCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAA                                >  SRR4302533.661788/1‑94 (MQ=60)

                                                                CTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAA                               >  SRR4302533.5618656/1‑94 (MQ=60)

                                                                CTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAA                               >  SRR4302533.739841/1‑94 (MQ=60)

                                                                 TGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAA                              >  SRR4302533.2061457/1‑94 (MQ=60)

                                                                  GATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAA                             >  SRR4302533.168082/1‑94 (MQ=60)

                                                                  GATGCAGATCCAGCTTTATCACTGTGCTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAA                             >  SRR4302533.2233473/1‑94 (MQ=60)

                                                                   ATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAAC                            >  SRR4302533.3652257/1‑94 (MQ=60)

                                                                     GCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGG                          <  SRR4302533.1303558/94‑1 (MQ=60)

                                                                        GATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATT                       >  SRR4302533.3634668/1‑94 (MQ=60)

                                                                        GATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATT                       <  SRR4302533.3475736/94‑1 (MQ=60)

                                                                        GATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATT                       <  SRR4302533.1917578/94‑1 (MQ=60)

                                                                        GATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATT                       <  SRR4302533.26877/94‑1 (MQ=60)

                                                                         ATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTG                      >  SRR4302533.5232376/1‑94 (MQ=60)

                                                                         ATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTG                      <  SRR4302533.3183129/94‑1 (MQ=60)

                                                                          TCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGG                     <  SRR4302533.5608575/94‑1 (MQ=60)

                                                                          TCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGG                     >  SRR4302533.5115252/1‑94 (MQ=60)

                                                                          TCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGG                     >  SRR4302533.536621/1‑94 (MQ=60)

                                                                           CCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGC                    >  SRR4302533.577165/1‑94 (MQ=60)

                                                                           CCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGC                    >  SRR4302533.672233/1‑94 (MQ=60)

                                                                           CCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGC                    >  SRR4302533.4084893/1‑94 (MQ=60)

                                                                            CAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCG                   <  SRR4302533.488606/94‑1 (MQ=60)

                                                                             AGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGC                  >  SRR4302533.1260040/1‑94 (MQ=60)

                                                                             AGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGC                  >  SRR4302533.1893340/1‑94 (MQ=60)

                                                                             AGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGC                  <  SRR4302533.507057/94‑1 (MQ=60)

                                                                             AGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGC                  >  SRR4302533.4724131/1‑94 (MQ=60)

                                                                              GCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCT                 <  SRR4302533.6122278/94‑1 (MQ=60)

                                                                                TTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAGGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCA               <  SRR4302533.4324108/94‑1 (MQ=60)

                                                                                TTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCA               >  SRR4302533.325004/1‑94 (MQ=60)

                                                                                TTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGGGTGATAAGCCGAATGGGATAGCGACGCGAATGAGGTCAAAAACGGAGTGGCGGTCA               >  SRR4302533.5632581/1‑94 (MQ=60)

                                                                                 TTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCAT              >  SRR4302533.1436307/1‑94 (MQ=60)

                                                                                 TTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCAT              >  SRR4302533.1373038/1‑94 (MQ=60)

                                                                                   ATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTT            >  SRR4302533.1730811/1‑94 (MQ=60)

                                                                                   ATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTT            >  SRR4302533.5182268/1‑94 (MQ=60)

                                                                                   ATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTT            <  SRR4302533.4408284/94‑1 (MQ=60)

                                                                                     CACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCA          >  SRR4302533.6277942/1‑94 (MQ=60)

                                                                                     CACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCA          <  SRR4302533.959512/94‑1 (MQ=60)

                                                                                     CACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCA          <  SRR4302533.3182701/94‑1 (MQ=60)

                                                                                      ACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCAT         >  SRR4302533.215902/1‑94 (MQ=60)

                                                                                       CTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATA        <  SRR4302533.4767313/94‑1 (MQ=60)

                                                                                        TGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAG       <  SRR4302533.1127691/94‑1 (MQ=60)

                                                                                           GTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAGATA    <  SRR4302533.1182870/94‑1 (MQ=60)

                                                                                           GTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAGATA    >  SRR4302533.943836/1‑94 (MQ=60)

                                                                                            TTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAGATAT   <  SRR4302533.6170283/94‑1 (MQ=60)

                                                                                            TTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAGATAT   <  SRR4302533.3729981/94‑1 (MQ=60)

                                                                                            TTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAGATAT   <  SRR4302533.687397/94‑1 (MQ=60)

                                                                                            TTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAGATAT   <  SRR4302533.4080933/94‑1 (MQ=60)

                                                                                             TGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAGATATG  >  SRR4302533.399946/1‑94 (MQ=60)

GCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAGATATG  >  NC_000913/3938281‑3938467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`