Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,955,315	G→A	L43F (CTC→TTC)	ilvY ←	IlvY

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,955,315	0	G	A	100.0%	867.5 / NA	232	L43F (CTC→TTC)	ilvY	IlvY
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (119/113); total (119/113)

Only 100 of 238 total aligned reads displayed.

ACAGCGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAGATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCTTTCC  >  NC_000913/3955225‑3955403

aCAGCGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGTCTGACCGAAAt                                                                                        >  1:6234230/1‑93 (MQ=255)

aCAGCGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAAt                                                                                        >  1:5991864/1‑93 (MQ=255)

aCAGCGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAAt                                                                                        <  2:5863559/93‑1 (MQ=255)

 cAGCGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAAtc                                                                                       <  1:155243/93‑1 (MQ=255)

 cAGCGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACAGAAAtc                                                                                       >  2:2805805/1‑93 (MQ=255)

  aGCGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAAtct                                                                                      <  2:969100/93‑1 (MQ=255)

   gCGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAAtctt                                                                                     <  1:3005594/93‑1 (MQ=255)

    cGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAAtcttc                                                                                    >  1:3711200/1‑93 (MQ=255)

    cGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAAtcttc                                                                                    <  2:354650/93‑1 (MQ=255)

     gTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAAtcttct                                                                                   <  1:18979/93‑1 (MQ=255)

      tttGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATcttctt                                                                                  >  1:4934938/1‑93 (MQ=255)

      tttGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATcttctt                                                                                  >  2:1645230/1‑93 (MQ=255)

      tttGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATcttctt                                                                                  >  2:4337467/1‑93 (MQ=255)

      tttGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATcttctt                                                                                  <  2:2239387/93‑1 (MQ=255)

        tGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTcc                                                                                <  2:2900739/93‑1 (MQ=255)

         gCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCa                                                                               <  2:2520208/93‑1 (MQ=255)

          cTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAg                                                                              <  1:5805549/93‑1 (MQ=255)

           tGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAgg                                                                             >  1:3395562/1‑93 (MQ=255)

           tGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAgg                                                                             >  2:1379380/1‑93 (MQ=255)

            tgtcGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGgc                                                                            <  1:5966074/90‑1 (MQ=255)

            gggCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGgc                                                                            >  1:2785854/1‑93 (MQ=255)

            gggCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGgc                                                                            >  2:3001050/1‑93 (MQ=255)

               cGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCt                                                                         <  2:4765127/93‑1 (MQ=255)

               cGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCt                                                                         <  1:648226/93‑1 (MQ=255)

                gAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTg                                                                        >  2:1329386/1‑93 (MQ=255)

                    aCGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATc                                                                    <  1:4307539/93‑1 (MQ=255)

                    aCGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATc                                                                    <  2:5461634/93‑1 (MQ=255)

                      gcgcAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTg                                                                  >  1:5894609/1‑93 (MQ=255)

                       cgcAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGc                                                                 <  2:3120140/93‑1 (MQ=255)

                       cgcACCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGc                                                                 <  2:5118965/93‑1 (MQ=255)

                        gcAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGcc                                                                >  2:4504078/1‑93 (MQ=255)

                        gcAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGcc                                                                <  1:5109006/93‑1 (MQ=255)

                         cAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCg                                                               >  1:570705/1‑93 (MQ=255)

                          aGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGt                                                              <  2:872251/93‑1 (MQ=255)

                            ctctTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTga                                                            <  1:2280851/93‑1 (MQ=255)

                              ctTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTgaga                                                          <  1:1510669/93‑1 (MQ=255)

                              ctTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTgaga                                                          >  2:1073901/1‑93 (MQ=255)

                              ctTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTgaga                                                          <  2:3854454/93‑1 (MQ=255)

                               ttCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGagag                                                         <  1:2173164/93‑1 (MQ=255)

                                   cccGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTg                                                     >  1:464060/1‑93 (MQ=255)

                                    ccGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTgg                                                    >  2:5735489/1‑93 (MQ=255)

                                     cGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGa                                                   >  1:1149667/1‑93 (MQ=255)

                                     cGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGa                                                   <  2:2700551/93‑1 (MQ=255)

                                     cGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGa                                                   <  1:4050345/93‑1 (MQ=255)

                                     cGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGa                                                   <  1:141542/93‑1 (MQ=255)

                                       cTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATg                                                 >  2:5949023/1‑93 (MQ=255)

                                        ttCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATgg                                                >  2:3393096/1‑93 (MQ=255)

                                        ttCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATgg                                                >  2:6263075/1‑93 (MQ=255)

                                         tcagtcagCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATggg                                               >  1:2933316/1‑93 (MQ=255)

                                            gtcagCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTa                                            <  1:2225678/93‑1 (MQ=255)

                                             tcagCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTaa                                           <  1:1393207/93‑1 (MQ=255)

                                             tcagCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTaa                                           >  2:4108776/1‑93 (MQ=255)

                                              cagCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAAc                                          <  1:1030346/93‑1 (MQ=255)

                                               agCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACg                                         >  1:723079/1‑93 (MQ=255)

                                               agCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACg                                         <  2:1459797/93‑1 (MQ=255)

                                                gCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGt                                        <  2:617472/93‑1 (MQ=255)

                                                gCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGt                                        >  1:3475612/1‑93 (MQ=255)

                                                gCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGt                                        >  1:1230231/1‑93 (MQ=255)

                                                gCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGt                                        >  1:3765582/1‑93 (MQ=255)

                                                 cGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTg                                       <  2:2362698/93‑1 (MQ=255)

                                                  gTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGc                                      >  1:3309259/1‑93 (MQ=255)

                                                   tCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCa                                     <  2:1171157/93‑1 (MQ=255)

                                                    cACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCAt                                    <  2:6294119/93‑1 (MQ=255)

                                                     acagTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATc                                   <  1:2953437/90‑1 (MQ=255)

                                                     aCCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATc                                   >  2:5306171/1‑93 (MQ=255)

                                                        gTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGcc                                <  1:2658882/93‑1 (MQ=255)

                                                        gTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGcc                                >  2:2162792/1‑93 (MQ=255)

                                                        gTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGcc                                >  1:4611887/1‑93 (MQ=255)

                                                         tGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGccc                               <  2:1808959/93‑1 (MQ=255)

                                                         tGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGccc                               <  1:2131479/93‑1 (MQ=255)

                                                          gCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGAATCGCCcg                              >  2:1551238/1‑93 (MQ=255)

                                                           cGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCcgc                             >  1:4374934/1‑93 (MQ=255)

                                                           cGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCcgc                             >  2:4255889/1‑93 (MQ=255)

                                                            ggTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCcgcg                            <  1:4482553/93‑1 (MQ=255)

                                                             gTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCcgcgc                           >  1:4832158/1‑93 (MQ=255)

                                                             gTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCcgcgc                           >  2:3082317/1‑93 (MQ=255)

                                                             gTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCcgcgc                           >  2:3347242/1‑93 (MQ=255)

                                                             gTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCcgcgc                           >  1:4070918/1‑93 (MQ=255)

                                                              ttATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCcgcgcg                          >  1:939501/1‑93 (MQ=255)

                                                              ttATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCcgcgcg                          >  1:1812955/1‑93 (MQ=255)

                                                               tATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCgcgcgc                         >  1:4542025/1‑93 (MQ=255)

                                                                  cgcgCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATAGGCTAACGTGCATCGCCCGCGCGCTGc                      <  1:986087/93‑1 (MQ=255)

                                                                   gcgcACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCg                     <  2:4306300/93‑1 (MQ=255)

                                                                      cacaAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACCTGCATCGCCCGCGCGCTGCGGcc                  >  2:4185067/1‑93 (MQ=255)

                                                                       acaAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCa                 >  2:4452676/1‑93 (MQ=255)

                                                                        caAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCaa                >  2:743085/1‑93 (MQ=255)

                                                                          aaCAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCaaaa              <  2:3691187/93‑1 (MQ=255)

                                                                          aaCAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCaaaa              >  2:2576776/1‑93 (MQ=255)

                                                                           aCAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAAt             >  2:5248405/1‑93 (MQ=255)

                                                                            cAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATg            >  1:1949950/1‑93 (MQ=255)

                                                                             aGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCTGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATgg           <  1:3242184/93‑1 (MQ=255)

                                                                             aGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATgg           <  1:2299266/93‑1 (MQ=255)

                                                                             aGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATgg           >  1:2324416/1‑93 (MQ=255)

                                                                              gCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATggc          <  1:156373/93‑1 (MQ=255)

                                                                              gCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATggc          <  2:6057491/93‑1 (MQ=255)

                                                                              gCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATggc          <  1:540401/93‑1 (MQ=255)

                                                                                  cTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCt      <  1:925394/93‑1 (MQ=255)

                                                                                     aCCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCTTTc   <  2:4978614/93‑1 (MQ=255)

                                                                                     aCCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCTTTc   >  1:3261285/1‑93 (MQ=255)

                                                                                      ccGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCTTTcc  <  1:574944/93‑1 (MQ=255)

ACAGCGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAGATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCTTTCC  >  NC_000913/3955225‑3955403

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AACAGCGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAGATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCTTTCCGCCAG  >  NC_000913/3955224‑3955408

AACAGCGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGTCTGACCGAAAT                                                                                             >  SRR4302533.6271555/1‑94 (MQ=60)

AACAGCGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAAT                                                                                             >  SRR4302533.6028158/1‑94 (MQ=60)

AACAGCGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAAT                                                                                             >  SRR4302533.658547/1‑94 (MQ=60)

AACAGCGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAAT                                                                                             >  SRR4302533.4383491/1‑94 (MQ=60)

 ACAGCGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATC                                                                                            >  SRR4302533.3809363/1‑94 (MQ=60)

 ACAGCGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATC                                                                                            <  SRR4302533.1910872/94‑1 (MQ=60)

  CAGCGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCT                                                                                           <  SRR4302533.156232/94‑1 (MQ=60)

   AGCGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTT                                                                                          >  SRR4302533.5935690/1‑94 (MQ=60)

    GCGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTC                                                                                         <  SRR4302533.3023980/94‑1 (MQ=60)

    GCGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTC                                                                                         >  SRR4302533.4939951/1‑94 (MQ=60)

    GCGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTC                                                                                         >  SRR4302533.3733991/1‑94 (MQ=60)

     CGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCT                                                                                        <  SRR4302533.4596167/94‑1 (MQ=60)

     CGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCT                                                                                        >  SRR4302533.4648839/1‑94 (MQ=60)

      GTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTT                                                                                       <  SRR4302533.19105/94‑1 (MQ=60)

      GTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTT                                                                                       <  SRR4302533.6026043/94‑1 (MQ=60)

      GTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTT                                                                                       >  SRR4302533.4964819/1‑94 (MQ=60)

      GTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTT                                                                                       >  SRR4302533.2923968/1‑94 (MQ=60)

       TTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTC                                                                                      <  SRR4302533.740703/94‑1 (MQ=60)

        TTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCC                                                                                     <  SRR4302533.5767482/94‑1 (MQ=60)

          GCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAG                                                                                   <  SRR4302533.5674102/94‑1 (MQ=60)

           CTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGG                                                                                  <  SRR4302533.5840606/94‑1 (MQ=60)

           CTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGG                                                                                  >  SRR4302533.3416531/1‑94 (MQ=60)

           CTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGG                                                                                  <  SRR4302533.3642561/94‑1 (MQ=60)

            TGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGC                                                                                 >  SRR4302533.2802970/1‑94 (MQ=60)

             tgtCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCG                                                                                <  SRR4302533.6002179/91‑1 (MQ=60)

             GGGCGAAAACGCGCAGCTCTTCGCCCGCTTTAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCG                                                                                <  SRR4302533.3344996/94‑1 (MQ=60)

             GGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCG                                                                                <  SRR4302533.6002178/94‑1 (MQ=60)

             GGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCG                                                                                >  SRR4302533.4374026/1‑94 (MQ=60)

               GCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCT                                                                              <  SRR4302533.4075535/94‑1 (MQ=60)

                CGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTG                                                                             >  SRR4302533.2333507/1‑94 (MQ=60)

                CGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTG                                                                             <  SRR4302533.652049/94‑1 (MQ=60)

                     ACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCT                                                                        <  SRR4302533.4749508/94‑1 (MQ=60)

                     ACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCT                                                                        <  SRR4302533.5016390/94‑1 (MQ=60)

                     ACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCT                                                                        <  SRR4302533.4333465/94‑1 (MQ=60)

                      CGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTG                                                                       >  SRR4302533.5930210/1‑94 (MQ=60)

                        CGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCC                                                                     <  SRR4302533.5860877/94‑1 (MQ=60)

                        CGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCC                                                                     >  SRR4302533.4829236/1‑94 (MQ=60)

                         GCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCG                                                                    <  SRR4302533.5139877/94‑1 (MQ=60)

                         GCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCG                                                                    >  SRR4302533.574073/1‑94 (MQ=60)

                         GCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCG                                                                    <  SRR4302533.144571/94‑1 (MQ=60)

                          CAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGT                                                                   >  SRR4302533.1559568/1‑94 (MQ=60)

                           AGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTG                                                                  >  SRR4302533.4139341/1‑94 (MQ=60)

                           AGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTG                                                                  <  SRR4302533.882903/94‑1 (MQ=60)

                            GCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGA                                                                 >  SRR4302533.2303175/1‑94 (MQ=60)

                             CTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAG                                                                <  SRR4302533.1157799/94‑1 (MQ=60)

                             CTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAG                                                                <  SRR4302533.2294972/94‑1 (MQ=60)

                               CTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAG                                                              <  SRR4302533.1768745/94‑1 (MQ=60)

                               CTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAG                                                              >  SRR4302533.1747865/1‑94 (MQ=60)

                               CTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAG                                                              <  SRR4302533.1519773/94‑1 (MQ=60)

                                TTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGC                                                             <  SRR4302533.3271757/94‑1 (MQ=60)

                                TTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGC                                                             <  SRR4302533.2186553/94‑1 (MQ=60)

                                   GCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTG                                                          <  SRR4302533.5247884/94‑1 (MQ=60)

                                   GCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTG                                                          >  SRR4302533.466828/1‑94 (MQ=60)

                                   GCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTG                                                          >  SRR4302533.2117354/1‑94 (MQ=60)

                                     CCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGA                                                        >  SRR4302533.1156534/1‑94 (MQ=60)

                                     CCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGA                                                        >  SRR4302533.452260/1‑94 (MQ=60)

                                      CGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGAT                                                       <  SRR4302533.142446/94‑1 (MQ=60)

                                      CGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGAT                                                       <  SRR4302533.2471739/94‑1 (MQ=60)

                                      CGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGAT                                                       <  SRR4302533.4075019/94‑1 (MQ=60)

                                       GCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGCATCTGCCGTGAGAGCGTGGATG                                                      >  SRR4302533.3043037/1‑94 (MQ=60)

                                         TTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGG                                                    >  SRR4302533.3325262/1‑94 (MQ=60)

                                         TTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGG                                                    <  SRR4302533.3691637/94‑1 (MQ=60)

                                         TTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGG                                                    <  SRR4302533.2324894/94‑1 (MQ=60)

                                         TTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGG                                                    <  SRR4302533.961085/94‑1 (MQ=60)

                                         TTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGG                                                    >  SRR4302533.2951253/1‑94 (MQ=60)

                                         TTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGG                                                    >  SRR4302533.6259648/1‑94 (MQ=60)

                                          TCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGC                                                   <  SRR4302533.1377338/94‑1 (MQ=60)

                                             GTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAA                                                <  SRR4302533.2239418/94‑1 (MQ=60)

                                              TCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAAC                                               <  SRR4302533.1401603/94‑1 (MQ=60)

                                               CAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACG                                              <  SRR4302533.1036406/94‑1 (MQ=60)

                                               CAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACG                                              >  SRR4302533.727355/1‑94 (MQ=60)

                                                AGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGT                                             >  SRR4302533.3497058/1‑94 (MQ=60)

                                                AGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGT                                             <  SRR4302533.640956/94‑1 (MQ=60)

                                                AGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGT                                             >  SRR4302533.1237594/1‑94 (MQ=60)

                                                AGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGT                                             >  SRR4302533.3788666/1‑94 (MQ=60)

                                                  CGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGC                                           >  SRR4302533.5217536/1‑94 (MQ=60)

                                                  CGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGC                                           >  SRR4302533.3329693/1‑94 (MQ=60)

                                                  CGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGC                                           <  SRR4302533.939408/94‑1 (MQ=60)

                                                   GTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCA                                          >  SRR4302533.2682340/1‑94 (MQ=60)

                                                    TCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCAT                                         <  SRR4302533.289030/94‑1 (MQ=60)

                                                     CACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATC                                        >  SRR4302533.328559/1‑94 (MQ=60)

                                                     CACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATC                                        <  SRR4302533.6272990/94‑1 (MQ=60)

                                                      ACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCG                                       >  SRR4302533.3091364/1‑94 (MQ=60)

                                                      ACAGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCG                                       <  SRR4302533.2971498/94‑1 (MQ=60)

                                                        CGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCC                                     >  SRR4302533.4639830/1‑94 (MQ=60)

                                                         GTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCC                                    <  SRR4302533.2675214/94‑1 (MQ=60)

                                                         GTGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCC                                    >  SRR4302533.104974/1‑94 (MQ=60)

                                                          TGCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCG                                   <  SRR4302533.2144624/94‑1 (MQ=60)

                                                           GCGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGC                                  >  SRR4302533.4401340/1‑94 (MQ=60)

                                                            CGGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCG                                 <  SRR4302533.581917/94‑1 (MQ=60)

                                                             GGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGC                                >  SRR4302533.4095700/1‑94 (MQ=60)

                                                             GGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGC                                <  SRR4302533.4509698/94‑1 (MQ=60)

                                                             GGTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGC                                >  SRR4302533.4861445/1‑94 (MQ=60)

                                                              GTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCG                               >  SRR4302533.1824027/1‑94 (MQ=60)

                                                              GTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCG                               >  SRR4302533.4598709/1‑94 (MQ=60)

                                                              GTTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCG                               >  SRR4302533.945022/1‑94 (MQ=60)

                                                               TTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGC                              >  SRR4302533.4569531/1‑94 (MQ=60)

                                                               TTATCGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGC                              >  SRR4302533.2252957/1‑94 (MQ=60)

                                                                   CGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCG                          >  SRR4302533.2196283/1‑94 (MQ=60)

                                                                   CGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCG                          <  SRR4302533.38258/94‑1 (MQ=60)

                                                                   CGCGCACAAACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATAGGCTAACGTGCATCGCCCGCGCGCTGCG                          <  SRR4302533.991857/94‑1 (MQ=60)

                                                                            ACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATG                 >  SRR4302533.1293032/1‑94 (MQ=60)

                                                                            ACAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATG                 >  SRR4302533.1961834/1‑94 (MQ=60)

                                                                             CAGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGG                >  SRR4302533.2338805/1‑94 (MQ=60)

                                                                              AGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCTGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGC               <  SRR4302533.3262165/94‑1 (MQ=60)

                                                                              AGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGC               <  SRR4302533.2956379/94‑1 (MQ=60)

                                                                              AGCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGC               <  SRR4302533.2313521/94‑1 (MQ=60)

                                                                               GCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCG              <  SRR4302533.543617/94‑1 (MQ=60)

                                                                               GCGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCG              <  SRR4302533.157369/94‑1 (MQ=60)

                                                                                CGGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGG             >  SRR4302533.1555000/1‑94 (MQ=60)

                                                                                 GGCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGC            >  SRR4302533.4489281/1‑94 (MQ=60)

                                                                                  GCTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCT           <  SRR4302533.1842283/94‑1 (MQ=60)

                                                                                   CTGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCTT          <  SRR4302533.930827/94‑1 (MQ=60)

                                                                                    TGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCTTT         >  SRR4302533.1417496/1‑94 (MQ=60)

                                                                                    TGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCTTT         >  SRR4302533.3771606/1‑94 (MQ=60)

                                                                                    TGACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCTTT         >  SRR4302533.1562045/1‑94 (MQ=60)

                                                                                     GACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCTTTC        >  SRR4302533.2152101/1‑94 (MQ=60)

                                                                                     GACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCTTTC        >  SRR4302533.3281403/1‑94 (MQ=60)

                                                                                     GACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCTTTC        <  SRR4302533.2020699/94‑1 (MQ=60)

                                                                                     GACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCTTTC        <  SRR4302533.1002779/94‑1 (MQ=60)

                                                                                      AGCGAAATCTTCTTCCAGGCGCTGAATCGGCCGTGAGAGCGTGGATCGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCTTTCC       <  SRR4302533.3496411/94‑1 (MQ=60)

                                                                                      ACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCTTTCC       <  SRR4302533.3009215/94‑1 (MQ=60)

                                                                                      ACCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCTTTCC       >  SRR4302533.2288105/1‑94 (MQ=60)

                                                                                       CCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCTTTCCG      <  SRR4302533.578338/94‑1 (MQ=60)

                                                                                       CCGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCTTTCCG      <  SRR4302533.578337/94‑1 (MQ=60)

                                                                                        CGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCTTTCCGC     >  SRR4302533.5188666/1‑94 (MQ=60)

                                                                                        CGAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCTTTCCGC     >  SRR4302533.1330596/1‑94 (MQ=60)

                                                                                         GAAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCTTTCCGCC    <  SRR4302533.5672358/94‑1 (MQ=60)

                                                                                          AAATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCTTTCCGCCA   <  SRR4302533.1972687/94‑1 (MQ=60)

                                                                                           AATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCTTTCCGCCAG  <  SRR4302533.1174964/94‑1 (MQ=60)

                                                                                           AATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCTTTCCGCCAG  <  SRR4302533.3560394/94‑1 (MQ=60)

                                                                                           AATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCTTTCCGCCAG  <  SRR4302533.2000702/94‑1 (MQ=60)

AACAGCGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCGCGCACAAACAGCGGCTGACCGAGATCTTCTTCCAGGCGCTGAATCTGCCGTGAGAGCGTGGATGGGCTAACGTGCATCGCCCGCGCGCTGCGGCCAAAATGGCGGCTTTCCGCCAG  >  NC_000913/3955224‑3955408

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`