Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,957,551 |
+T |
intergenic (‑120/‑741) |
ppiC ← / → rep |
peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,957,550 | 1 | . | T | 100.0%
| 634.0
/ NA
| 173 | intergenic (‑119/‑742) | ppiC/rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (87/86); total (87/86) |
Only 100 of 178 total aligned reads displayed.
AGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑C‑T‑G‑C‑TCGCAGGT‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT > NC_000913/3957471‑3957627
|
aGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGT‑ccc > 1:3455571/1‑92 (MQ=255)
gCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGT‑ccct < 1:5340278/93‑3 (MQ=255)
gCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGT‑cccc > 2:2335127/1‑91 (MQ=255)
cATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGT‑ccctc < 2:4828566/93‑4 (MQ=255)
aTGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGT‑ccctca > 1:1303296/1‑89 (MQ=255)
gATCCGCAGATGCTAACGTAATTGTCAGTCAGGGGGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAg < 1:358809/93‑1 (MQ=255)
gATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAg < 1:2409526/93‑1 (MQ=255)
tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAggg < 1:4977672/93‑1 (MQ=255)
cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGga < 2:1555134/93‑1 (MQ=255)
cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGga < 1:3250867/93‑1 (MQ=255)
cAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGgaga > 2:3621695/1‑93 (MQ=255)
gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCCAGGGGAGaaa > 2:3259024/1‑93 (MQ=255)
gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGaaa > 1:3562047/1‑93 (MQ=255)
gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGaaa > 1:2748423/1‑93 (MQ=255)
gATGCTAACCTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGaaa > 2:3165024/1‑93 (MQ=255)
aTGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGaaaa > 1:5405366/1‑93 (MQ=255)
tGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAAc < 1:1910627/93‑1 (MQ=255)
tGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAAc < 1:75657/93‑1 (MQ=255)
gCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACt > 1:735500/1‑93 (MQ=255)
cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACtt > 2:1911115/1‑93 (MQ=255)
tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGGAAAATTa > 2:1425346/1‑93 (MQ=255)
tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTa > 1:4514951/1‑93 (MQ=255)
tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTa < 2:1311989/93‑1 (MQ=255)
aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGGCCGGAAAATGC‑G‑G‑G‑CTTCCCAGGTCCCCCAAGGGGAGAAAAATTAg > 1:3709030/1‑93 (MQ=255)
aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCCAGGGGAGAAAACTTAg > 1:57982/1‑93 (MQ=255)
aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAg < 1:1240149/93‑1 (MQ=255)
aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCACGTCCCTCGAGGGGAGAAAACTTAg > 2:2669337/1‑93 (MQ=255)
aCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAgg > 2:2210130/1‑93 (MQ=255)
aCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAgg > 2:4737667/1‑93 (MQ=255)
aCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAgg < 1:734334/93‑1 (MQ=255)
aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCctc < 2:4100055/93‑1 (MQ=255)
aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCctc < 2:4575359/93‑1 (MQ=255)
tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTa < 2:5096707/93‑1 (MQ=255)
tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑C‑GGG‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTa < 1:157754/93‑1 (MQ=255)
tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATg > 2:3903490/1‑93 (MQ=255)
cagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATgg < 1:144459/93‑1 (MQ=255)
cagtcagGGAGTGGCTGGTACATATAGGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATgg < 1:48411/93‑1 (MQ=255)
cagtcagGGAGTGGCTGGTAAATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATgg > 2:612458/1‑93 (MQ=255)
agtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATggg < 2:5860345/93‑1 (MQ=255)
tcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCt < 1:5593173/93‑1 (MQ=255)
cagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTa < 2:2937433/93‑1 (MQ=255)
agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTATGGGCTCTATGGGCTAc > 2:5323197/1‑93 (MQ=255)
agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc > 2:300605/1‑93 (MQ=255)
agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc > 1:1022326/1‑93 (MQ=255)
gggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa < 2:4524696/93‑1 (MQ=255)
gggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑C‑GGG‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa > 1:2867184/1‑93 (MQ=255)
ggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaa > 2:2806267/1‑93 (MQ=255)
ggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaa > 1:1490301/1‑93 (MQ=255)
gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa > 2:6203017/1‑93 (MQ=255)
aGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAg < 2:784676/93‑1 (MQ=255)
gTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGt < 2:1029025/93‑1 (MQ=255)
tGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc < 1:4641122/93‑1 (MQ=255)
tGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc < 2:3515467/93‑1 (MQ=255)
ggCTGGTACATATATGACAAAAGCCGGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa < 1:4381459/93‑1 (MQ=255)
gCTGGTACATATATGGCAAAAGCCCTGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAt < 2:4185763/93‑1 (MQ=255)
gCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAt > 1:5840035/1‑93 (MQ=255)
cTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt > 1:3887550/1‑93 (MQ=255)
cTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt < 2:4329855/93‑1 (MQ=255)
tGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa > 1:6175808/1‑93 (MQ=255)
ggTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt > 1:3163164/1‑93 (MQ=255)
ggTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt > 1:1979286/1‑93 (MQ=255)
gTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc < 2:6021377/93‑1 (MQ=255)
gTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc > 1:4739789/1‑93 (MQ=255)
tACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg < 1:1072851/93‑1 (MQ=255)
tACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg > 1:2084534/1‑93 (MQ=255)
aCATATATGGCAAAAGCCCGGAAAAT‑CGG‑G‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg < 1:3516903/93‑1 (MQ=255)
cATATATGGCAAAAGCCCGGAAAAT‑C‑C‑GGG‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg > 1:2183591/1‑93 (MQ=255)
cATATATGGCAAAAGCCCGGAAAAT‑C‑C‑G‑GTCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg < 2:3198378/93‑1 (MQ=255)
atatatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg < 2:3650772/93‑1 (MQ=255)
atatatGGCAAAAGCCCGGAAAAT‑C‑C‑GGG‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg > 2:2555837/1‑93 (MQ=255)
tatatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa > 2:3689507/1‑93 (MQ=255)
tatatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa > 2:4433691/1‑93 (MQ=255)
atatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt < 2:2579147/93‑1 (MQ=255)
atatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt > 1:4040477/1‑93 (MQ=255)
atatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt < 2:6142513/93‑1 (MQ=255)
tatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg < 1:3819401/93‑1 (MQ=255)
tatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg < 2:3407440/93‑1 (MQ=255)
atGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAGACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATgg > 2:5776511/1‑93 (MQ=255)
tGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt < 2:4065469/93‑1 (MQ=255)
tGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt > 1:418309/1‑93 (MQ=255)
ggCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtt > 1:6151759/1‑93 (MQ=255)
gCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta < 1:5123838/93‑1 (MQ=255)
gCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAATCATTATCGGCGATGGtta < 2:6162393/93‑1 (MQ=255)
cAAAAGCCCGGAAAAT‑C‑C‑GGG‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat > 2:4412451/1‑93 (MQ=255)
cAAAAGCCCGGAAAAT‑C‑C‑GGG‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat > 1:3033190/1‑93 (MQ=255)
aaaaGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt > 2:3235026/1‑93 (MQ=255)
aaaaGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt > 1:3339664/1‑93 (MQ=255)
acaGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt < 1:3193735/91‑1 (MQ=255)
aaaGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt < 1:6009152/93‑1 (MQ=255)
aGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttta < 1:2082728/93‑1 (MQ=255)
aGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttta < 2:3096995/93‑1 (MQ=255)
aGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttta < 2:1297195/93‑1 (MQ=255)
gCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat < 2:2165649/93‑1 (MQ=255)
cccGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt < 2:571537/93‑1 (MQ=255)
ccGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg < 2:567894/93‑1 (MQ=255)
ccGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg > 2:4676026/1‑93 (MQ=255)
ccGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg < 1:604184/93‑1 (MQ=255)
ccGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg > 1:888138/1‑93 (MQ=255)
cGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCACGGGGAGAAAGCTTAGGGGCTGTATGGGCTACAAACTCATTATCGGGGATGGTCATTTTCTTGt > 2:1746127/1‑93 (MQ=255)
cGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGt < 2:4440222/93‑1 (MQ=255)
|
AGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑C‑T‑G‑C‑TCGCAGGT‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT > NC_000913/3957471‑3957627
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CTG‑‑CTCGCAGGT‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGAT > NC_000913/3957478‑3957642
|
TCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGG < SRR4302533.5007857/94‑1 (MQ=60)
CGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAG < SRR4302533.3270915/94‑1 (MQ=60)
CAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAA < SRR4302533.321457/94‑1 (MQ=60)
AGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATTGCAAAAGCCCGGAAAATA‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAA > SRR4302533.645954/1‑94 (MQ=60)
AGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAA > SRR4302533.2765271/1‑94 (MQ=60)
AGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAA > SRR4302533.3583993/1‑94 (MQ=60)
AGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCACGGACAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAA > SRR4302533.3120191/1‑94 (MQ=60)
GATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAA > SRR4302533.4911113/1‑94 (MQ=60)
GATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAA > SRR4302533.3487808/1‑94 (MQ=60)
GATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAA > SRR4302533.5437849/1‑94 (MQ=60)
TGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACT < SRR4302533.76149/94‑1 (MQ=60)
TGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACT > SRR4302533.739827/1‑94 (MQ=60)
TGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACT < SRR4302533.1922281/94‑1 (MQ=60)
GCTANCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTT < SRR4302533.2110872/94‑1 (MQ=60)
CTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTA > SRR4302533.4542290/1‑94 (MQ=60)
TAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATTTGGCAAAAACCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTGCCTCAAGGGGAGAAAACTTAG > SRR4302533.2611431/1‑94 (MQ=60)
TAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCCAGGGGAGAAAACTTAG > SRR4302533.58365/1‑94 (MQ=60)
AACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGG < SRR4302533.1247558/94‑1 (MQ=60)
ACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGG < SRR4302533.738655/94‑1 (MQ=60)
ACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGG > SRR4302533.6201165/1‑94 (MQ=60)
ACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGG < SRR4302533.1186244/94‑1 (MQ=60)
GTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCC > SRR4302533.1608584/1‑94 (MQ=60)
ATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCT < SRR4302533.3880509/94‑1 (MQ=60)
TGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTAT < SRR4302533.158760/94‑1 (MQ=60)
TGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTAT < SRR4302533.6074810/94‑1 (MQ=60)
CAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGG < SRR4302533.754541/94‑1 (MQ=60)
CAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGG < SRR4302533.145383/94‑1 (MQ=60)
CAGTCAGGGAGTGGCTGGTACATATAGGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGG < SRR4302533.48747/94‑1 (MQ=60)
GTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCT > SRR4302533.2990345/1‑94 (MQ=60)
TCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTA > SRR4302533.154208/1‑94 (MQ=60)
TCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTA < SRR4302533.5626963/94‑1 (MQ=60)
CAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAC > SRR4302533.1028336/1‑94 (MQ=60)
CAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAC > SRR4302533.4408356/1‑94 (MQ=60)
CAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAC > SRR4302533.2101805/1‑94 (MQ=60)
AGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACA > SRR4302533.2884825/1‑94 (MQ=60)
GGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAA > SRR4302533.1499288/1‑94 (MQ=60)
GAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGACAACTTAGGGCCTCTATGGGCTACAAAG > SRR4302533.2456884/1‑94 (MQ=60)
GTGGCTGGTACATATATGGCAAAAGCCCGGAAAAAC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTC > SRR4302533.1437600/1‑94 (MQ=60)
TGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCA < SRR4302533.4669242/94‑1 (MQ=60)
GGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAT > SRR4302533.5875346/1‑94 (MQ=60)
GGCTGGTACATATATGACAAAAGCCGGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAT < SRR4302533.4407913/94‑1 (MQ=60)
GCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATT > SRR4302533.3911267/1‑94 (MQ=60)
CTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTA > SRR4302533.6212914/1‑94 (MQ=60)
CTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTA < SRR4302533.1927004/94‑1 (MQ=60)
TGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAT > SRR4302533.5671616/1‑94 (MQ=60)
TGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAT > SRR4302533.5326027/1‑94 (MQ=60)
TGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAT > SRR4302533.1991407/1‑94 (MQ=60)
TGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAT > SRR4302533.3182634/1‑94 (MQ=60)
TGGTACATATATGGCAAAAGCCAGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAT < SRR4302533.3575708/94‑1 (MQ=60)
GGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATC > SRR4302533.4768528/1‑94 (MQ=60)
GGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATC < SRR4302533.2304038/94‑1 (MQ=60)
GTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCG > SRR4302533.2097368/1‑94 (MQ=60)
TACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGG < SRR4302533.1079176/94‑1 (MQ=60)
TACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGG < SRR4302533.3719285/94‑1 (MQ=60)
ACATATATGGCAAAAGCCCGGAAAATCGGGGCT‑‑‑‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGG < SRR4302533.3538585/94‑1 (MQ=60)
ACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGG > SRR4302533.3810880/1‑94 (MQ=60)
ACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGG > SRR4302533.2197055/1‑94 (MQ=60)
CATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGG < SRR4302533.336048/94‑1 (MQ=60)
CATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGG < SRR4302533.5151730/94‑1 (MQ=60)
CATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGG < SRR4302533.5873103/94‑1 (MQ=60)
ATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGA > SRR4302533.3970120/1‑94 (MQ=60)
TATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAT > SRR4302533.4065069/1‑94 (MQ=60)
ATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATG > SRR4302533.1265067/1‑94 (MQ=60)
ATATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATG < SRR4302533.4648385/94‑1 (MQ=60)
TATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGG < SRR4302533.5481420/94‑1 (MQ=60)
TATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGG < SRR4302533.3842755/94‑1 (MQ=60)
ATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGT > SRR4302533.420815/1‑94 (MQ=60)
ATGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGT > SRR4302533.3183258/1‑94 (MQ=60)
TGGCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTT > SRR4302533.6188781/1‑94 (MQ=60)
GCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTAT > SRR4302533.3051745/1‑94 (MQ=60)
GCAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTAT < SRR4302533.5154793/94‑1 (MQ=60)
CAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATT < SRR4302533.6099797/94‑1 (MQ=60)
CAAAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATT > SRR4302533.3360304/1‑94 (MQ=60)
tggaaaaaacccgaaaattccggactTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTT < SRR4302533.3294857/68‑1 (MQ=60)
ACAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTT < SRR4302533.3213383/94‑1 (MQ=60)
AAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTT < SRR4302533.4403342/94‑1 (MQ=60)
AAAGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTT < SRR4302533.6045558/94‑1 (MQ=60)
AGCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTAT < SRR4302533.2095547/94‑1 (MQ=60)
GCCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATT < SRR4302533.1998891/94‑1 (MQ=60)
CCCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG > SRR4302533.893352/1‑94 (MQ=60)
CCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT > SRR4302533.1833644/1‑94 (MQ=60)
CCGGAAAATC‑‑‑‑CGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT < SRR4302533.607732/94‑1 (MQ=60)
ggaaaatccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCA > SRR4302533.6160291/15‑94 (MQ=60)
ggaaaatccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGCGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCA < SRR4302533.4030930/80‑1 (MQ=60)
gaaaatccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAT > SRR4302533.5187365/14‑94 (MQ=60)
aaatccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATT > SRR4302533.1221104/12‑94 (MQ=60)
aaatccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATT > SRR4302533.5616523/12‑94 (MQ=60)
aaatccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATT < SRR4302533.1685368/83‑1 (MQ=60)
aaatccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATT < SRR4302533.2175312/83‑1 (MQ=60)
aaatccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATT > SRR4302533.3655791/12‑94 (MQ=60)
aatccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTT > SRR4302533.3251326/11‑94 (MQ=60)
aatccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTT < SRR4302533.5634568/84‑1 (MQ=60)
aatccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTT < SRR4302533.4774735/84‑1 (MQ=60)
atccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTA < SRR4302533.1493207/85‑1 (MQ=60)
atccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTA < SRR4302533.4048130/85‑1 (MQ=60)
ccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATG < SRR4302533.499048/87‑1 (MQ=60)
ccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATG > SRR4302533.5863101/8‑94 (MQ=60)
cgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGA < SRR4302533.3184501/88‑1 (MQ=60)
gggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAG < SRR4302533.5383798/89‑1 (MQ=60)
gggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAG < SRR4302533.5559008/89‑1 (MQ=60)
ggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGC < SRR4302533.2456835/90‑1 (MQ=60)
ggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGC < SRR4302533.2518480/90‑1 (MQ=60)
ggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGC < SRR4302533.4422545/90‑1 (MQ=60)
gctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCG < SRR4302533.2622841/91‑1 (MQ=60)
gctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCG < SRR4302533.3328556/91‑1 (MQ=60)
gctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCG > SRR4302533.5578168/4‑94 (MQ=60)
TTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGAT > SRR4302533.4997133/1‑94 (MQ=60)
TTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGAT > SRR4302533.578798/1‑94 (MQ=60)
|
TCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑‑‑‑CTG‑‑CTCGCAGGT‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGAT > NC_000913/3957478‑3957642
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
