Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,958,261 |
T→C |
intergenic (‑830/‑31) |
ppiC ← / → rep |
peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,958,261 | 0 | T | C | 99.3%
| 477.0
/ NA
| 152 | intergenic (‑830/‑31) | ppiC/rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (80/70); total (82/70) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 185 total aligned reads displayed.
TTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑C‑CT‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCC > NC_000913/3958171‑3958346
|
cGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑C‑cc‑cccc > 1:3908619/1‑93 (MQ=255)
cttctCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑C‑cc‑cccccccg > 1:866272/1‑91 (MQ=255)
tctctctGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCg < 2:5461188/93‑1 (MQ=255)
ctccctGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGa < 1:4469877/93‑1 (MQ=255)
tctctGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGaa < 1:2366751/93‑1 (MQ=255)
tctctGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑C‑CC‑CCCCCCGTTCGAAg > 2:6033048/1‑93 (MQ=255)
ctctGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAg < 2:5180754/93‑1 (MQ=255)
ctctGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑C‑CC‑CCCCCCGTTCGAAGa < 2:3098484/93‑1 (MQ=255)
tctGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGa < 2:2286477/93‑1 (MQ=255)
tctGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGa > 2:1054372/1‑93 (MQ=255)
tctGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGa < 1:1258884/93‑1 (MQ=255)
tctGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑CACC‑CCCCCCGGTCGAAGa > 2:1028135/1‑93 (MQ=255)
tctGATTTAAACACCCGCAGCCAACCGGTTAGCGGCTTACCCGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGa < 2:3615661/93‑1 (MQ=255)
tGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGAtt > 1:508031/1‑93 (MQ=255)
atatAAACATCCGCAGCCAACCGGTTAGCGACTTACACGCGGTCACATACAAATGTGATTTTACTACAAA‑C‑C‑CC‑CCCCCCGTTCGAAGATTGa < 2:2096987/90‑1 (MQ=255)
tAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAgga > 1:4938165/1‑91 (MQ=255)
aaaCATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGaaa > 2:4980981/1‑93 (MQ=255)
aaCATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAAt > 2:942261/1‑93 (MQ=255)
aCATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATa < 2:6030622/93‑1 (MQ=255)
aCATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCCAAGATTGAGCAATa > 2:1975650/1‑93 (MQ=255)
cATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATac < 2:5343172/93‑1 (MQ=255)
aTCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATaca > 1:1652218/1‑93 (MQ=255)
aTCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑C‑CC‑CCCCCCGTTCGAAGATTGAGCAATacac > 2:4689968/1‑93 (MQ=255)
tCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGCTTGGGAAATaaac > 2:394526/1‑93 (MQ=255)
tCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATacac < 1:3734966/93‑1 (MQ=255)
ccGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACAcc < 2:4651119/93‑1 (MQ=255)
cGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCt < 1:5693859/93‑1 (MQ=255)
cGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑C‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTa < 2:865186/93‑1 (MQ=255)
gCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑C‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTAt > 1:4219998/1‑93 (MQ=255)
ccAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTa < 2:3698042/92‑1 (MQ=255)
cAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTAt < 2:1093673/93‑1 (MQ=255)
aGCCAACGGGTTAGCGGCTTAAACGCGGTCACATTCAAATGCGATTCTTGTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATg < 2:1827057/93‑1 (MQ=255)
gCCAACCGTTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑C‑CC‑CCCCCCGGTCGAAGATTGCGGAACAAACCTAttgg > 2:6138860/1‑90 (MQ=255)
gCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑C‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCg > 2:2726824/1‑93 (MQ=255)
ccAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCCTTCGAAGATTGAGCAAAACACCTATGCg > 1:342205/1‑93 (MQ=255)
aaCCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTGGAAGATTGGGGAAAACACCCATGCG‑tt > 1:1334185/1‑92 (MQ=255)
aaCCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGGAATACACCTATGCG‑Tc > 2:5643724/1‑93 (MQ=255)
aaCCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑Tc < 2:80487/93‑1 (MQ=255)
ggTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTaaa > 1:5843968/1‑93 (MQ=255)
gTTAGCGGCTTACACGCGGTCCCATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAAc < 2:1906464/93‑1 (MQ=255)
gTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAAc > 2:3182243/1‑93 (MQ=255)
gTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAAc < 2:1672674/93‑1 (MQ=255)
gTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAAc > 1:1000689/1‑93 (MQ=255)
ttAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTGCGAATGTTTAGCACTACACCTCTGCG‑GCTAAAcc > 2:2488272/1‑93 (MQ=255)
ttAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑C‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAAccc < 2:1620070/93‑1 (MQ=255)
tAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAAccc < 1:2268492/93‑1 (MQ=255)
tggggCTTACCCGCGGTCACATTCAAATGCGATTTTTCCACAAA‑C‑C‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAAcccc < 2:3261606/90‑1 (MQ=255)
aGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAAcccc < 2:5936340/93‑1 (MQ=255)
gCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCg < 2:4049102/93‑1 (MQ=255)
cGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCgg > 2:1937524/1‑93 (MQ=255)
ggCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATAAACCTATGCG‑GCTAAACCCCGGc > 2:5125829/1‑93 (MQ=255)
ggCTTACACGCGGTCACATCCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGc > 1:1925852/1‑93 (MQ=255)
gCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑C‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGGca > 2:4722769/1‑93 (MQ=255)
cTTACACGTGGTCACATTCTAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGACCAAAAAACCAATGCG‑TCTAAACCCCCGCca > 2:6111400/1‑93 (MQ=255)
cTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCca < 1:6225452/93‑1 (MQ=255)
ttACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAAATTAGGCAAT‑CAACCATTCG‑GTTTAACCCCGGCcaaa > 2:4922912/1‑92 (MQ=255)
ttACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑C‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCcaac > 1:3046043/1‑93 (MQ=255)
tACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGCGTGAGCAATACACCTATTCG‑TCTTAACCCCGGCcaac > 1:5563755/1‑93 (MQ=255)
tACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑C‑CCCCCCCCCGTTCGAAGATTAGGCAATACACCAATCCG‑TCTAAACCCCGCCcaaa > 1:1796894/1‑92 (MQ=255)
cacGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑C‑CC‑CCCCCCGTTCCAAGGTTGAGGAATACAACTATGGGTTCAAAACCCCGCCcaacaa > 2:2048958/1‑93 (MQ=255)
acGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑C‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCcaacaaca < 1:5333865/93‑1 (MQ=255)
cgcgGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑C‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCcaacaacaa < 1:5984605/93‑1 (MQ=255)
gcgGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCCAAAATTGAGCAATACACCTATGGG‑TCTAAACCCCGGCcaacaacaa > 1:1578422/1‑93 (MQ=255)
ggTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGc > 1:4015284/1‑93 (MQ=255)
ggTCACATTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGc < 1:1035171/93‑1 (MQ=255)
gTCACATTCAAATGCGATTCTGCTAC‑AACC‑C‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCt < 1:4439140/93‑1 (MQ=255)
gTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑C‑CCCCCCCCCGTTCGAAAATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAAAAACAAGCt > 2:2678001/1‑93 (MQ=255)
gTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑C‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCccacaaaaaaaag > 1:4651800/1‑89 (MQ=255)
cacaTTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGt < 1:2736851/93‑1 (MQ=255)
cacaTTCAAATGCGATTCTGCTAC‑AA‑T‑C‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGTc < 1:36829/93‑1 (MQ=255)
cacaTTAAAATGCGATTCTGCTAC‑AACC‑C‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGt < 2:426950/93‑1 (MQ=255)
acaTGCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGTc < 1:2120860/93‑1 (MQ=255)
caTTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATTCG‑TCTAAACCCCGGCCAACAACAAGCTgccc > 1:4770735/1‑90 (MQ=255)
caTTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGTCg < 1:3496004/93‑1 (MQ=255)
caTTCAAATGCGATTCTGCTAC‑AA‑T‑C‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGTCGa > 1:5114309/1‑93 (MQ=255)
aTTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGTCGa < 1:1184064/93‑1 (MQ=255)
aTTCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCCTTCGAAGATTTAGGAATACACCCATGCG‑TCTAAAACCCCGCCAAAAACAAAATGTcca > 2:5484135/1‑91 (MQ=255)
ttCAAATGCGATTCTGCTACAAA‑C‑C‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGTCGaa < 1:5919984/93‑1 (MQ=255)
tCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGTCGAAt < 1:1892477/93‑1 (MQ=255)
tCAAATGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGTCGAAt < 1:1881089/93‑1 (MQ=255)
tCAAATGCGATTCTGCTAC‑AA‑T‑C‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGTCGAAtt < 1:5485509/93‑1 (MQ=255)
tCAAATGCGATTCTGCTAC‑AA‑T‑C‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGTCGAAtt < 2:1540721/93‑1 (MQ=255)
cAAATGCGATTCTGCTAC‑AACC‑C‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGTCGAAtt < 2:5161682/93‑1 (MQ=255)
aaTGCGATTCTGCTAC‑AA‑T‑C‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGt < 1:143601/93‑1 (MQ=255)
aTGCGATTCTGCTAC‑AACC‑C‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGt < 2:4577520/93‑1 (MQ=255)
aTGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCATTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGt > 1:2830557/1‑93 (MQ=255)
tGCGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGtt < 2:2859425/93‑1 (MQ=255)
cGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTAc < 1:3151731/93‑1 (MQ=255)
cGATTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTAc > 1:930036/1‑93 (MQ=255)
gATTCTGCTAC‑AA‑T‑C‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCg < 2:477979/93‑1 (MQ=255)
aTTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCg < 2:2934293/93‑1 (MQ=255)
aTTCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCg > 1:2116777/1‑93 (MQ=255)
ttCTGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCgg < 2:3500917/93‑1 (MQ=255)
ttCTGCTAC‑AA‑T‑C‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGc > 1:3348598/1‑93 (MQ=255)
tGCTAC‑AACC‑C‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGccc < 1:4596565/93‑1 (MQ=255)
tGCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGccc < 1:3095879/93‑1 (MQ=255)
gCTAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGcccc > 1:1824497/1‑93 (MQ=255)
cTAC‑AA‑T‑C‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAAAAACCAGCTGTCGAATTTGTTACCCGccccc > 1:2560929/1‑92 (MQ=255)
tAC‑AA‑TCC‑CC‑CCCCCCGTTCGAAGATTGAGCAAAACACCTATTCG‑TCTCAACCCCGGCCCAAAACAAGCCATCTAATTCGTTACACGCCcctc > 2:3680265/1‑92 (MQ=255)
tAC‑AA‑T‑C‑C‑‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCcctgcc > 1:6194062/1‑93 (MQ=255)
|
TTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑C‑CT‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCG‑TCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCC > NC_000913/3958171‑3958346
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCTC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCTG > NC_000913/3958168‑3958354
|
GATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCC < SRR4302533.3148679/94‑1 (MQ=60)
GATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCC < SRR4302533.4476048/94‑1 (MQ=60)
GATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCC > SRR4302533.1956587/1‑94 (MQ=60)
GATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCC < SRR4302533.3440200/94‑1 (MQ=60)
TTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CC > SRR4302533.4837055/1‑94 (MQ=60)
TCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCC < SRR4302533.1526402/94‑1 (MQ=60)
TCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCC > SRR4302533.3932492/1‑94 (MQ=60)
GTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCC > SRR4302533.4067563/1‑94 (MQ=60)
TCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCcg > SRR4302533.871347/1‑92 (MQ=60)
TCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCccttc > SRR4302533.3292947/1‑89 (MQ=60)
CTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGA > SRR4302533.4596215/1‑94 (MQ=60)
CTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCCGTCGA > SRR4302533.5124261/1‑94 (MQ=60)
CTCTCTCTGATTTAAACAACCGCAGCCAACCGGTTTGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCCCCCC‑CCCCCGTTC < SRR4302533.2111921/94‑1 (MQ=60)
CTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCcgtccgaa > SRR4302533.3784354/1‑86 (MQ=60)
CTCCCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAA < SRR4302533.4496911/94‑1 (MQ=60)
TCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAG < SRR4302533.2381389/94‑1 (MQ=60)
TCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAG > SRR4302533.785300/1‑94 (MQ=60)
TCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCccttcctac > SRR4302533.3271104/1‑85 (MQ=60)
CTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACCCGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGA < SRR4302533.1750827/94‑1 (MQ=60)
TCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGAT < SRR4302533.1266413/94‑1 (MQ=60)
CTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AACC‑‑CCCC‑CCCCCGTTCGAAGATT < SRR4302533.4784224/94‑1 (MQ=60)
CTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATT > SRR4302533.511047/1‑94 (MQ=60)
CTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATT > SRR4302533.572604/1‑94 (MQ=60)
CTAATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCGCACTCAAAGGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATT < SRR4302533.3259853/94‑1 (MQ=60)
GATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGAAGATTGAG < SRR4302533.5849098/94‑1 (MQ=60)
ATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAG < SRR4302533.3378340/94‑1 (MQ=60)
TTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGGA > SRR4302533.4968060/1‑94 (MQ=60)
TTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCA < SRR4302533.4487076/94‑1 (MQ=60)
TAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGcttcgaaattgaaagaa > SRR4302533.4208922/1‑77 (MQ=60)
AAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAAT > SRR4302533.1896420/1‑94 (MQ=60)
AAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCccttcgcagattgtgcaca > SRR4302533.2246914/1‑75 (MQ=60)
CATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACA > SRR4302533.1662224/1‑94 (MQ=60)
TCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACC < SRR4302533.3757879/94‑1 (MQ=60)
CCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCT < SRR4302533.1435514/94‑1 (MQ=60)
CCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTA < SRR4302533.3501803/94‑1 (MQ=60)
CGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTA < SRR4302533.5728242/94‑1 (MQ=60)
CGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTAT > SRR4302533.4245515/1‑94 (MQ=60)
GCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTAT > SRR4302533.2846099/1‑94 (MQ=60)
CAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATG > SRR4302533.1885084/1‑94 (MQ=60)
AGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGC < SRR4302533.6003848/94‑1 (MQ=60)
AGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGC > SRR4302533.2317209/1‑94 (MQ=60)
AGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATCC > SRR4302533.388385/1‑94 (MQ=60)
GCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCG < SRR4302533.3169899/94‑1 (MQ=60)
GCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCCTTCGAAGATTGAGCAAAACACCTATGCG > SRR4302533.344293/1‑94 (MQ=60)
CAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTTAGCAATACACCCATGCGGC > SRR4302533.1300907/1‑94 (MQ=60)
CAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCcttccgaaatttaggcaaaaaacccatcgctt > SRR4302533.1481494/1‑62 (MQ=60)
CAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCcgttggaagattggggaaaacacccatgcgtt > SRR4302533.1342191/1‑62 (MQ=60)
AACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCAC‑CCCCCcgttctaagcttaagacatacacctattcgtct > SRR4302533.1000943/1‑61 (MQ=60)
CGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAA < SRR4302533.5076575/94‑1 (MQ=60)
CGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAA > SRR4302533.5879301/1‑94 (MQ=60)
CGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCCAAGATTCAGCAATAACCCTATTCGTCTAAC > SRR4302533.3938397/1‑94 (MQ=60)
CGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCCTCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAA > SRR4302533.3545014/1‑94 (MQ=60)
CGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCcggtggacgatttagaagaacaccttttggggcaca > SRR4302533.4429518/1‑58 (MQ=60)
CGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCccgtgctggatctcgcaaaaaaccctttcgtcttaa > SRR4302533.268066/1‑58 (MQ=60)
GGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAAC > SRR4302533.1006531/1‑94 (MQ=60)
GGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCcgttcaaagctttaaaaataaacctattcgacaaaac > SRR4302533.933491/1‑57 (MQ=60)
GTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCCCCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACC < SRR4302533.181381/94‑1 (MQ=60)
TAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCC < SRR4302533.2527843/94‑1 (MQ=60)
TAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCC < SRR4302533.2282529/94‑1 (MQ=60)
AGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGCAGATTGAGCAATACACCTATGCGTCTAAACCCCG > SRR4302533.3036953/1‑94 (MQ=60)
GCGGCTTACCCGCGGCCACAATAAAAGGCGATTCTGCTAC‑AACC‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGG < SRR4302533.4437476/94‑1 (MQ=57)
CGGCTTACACGCGGTCACATCCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGC > SRR4302533.1937600/1‑94 (MQ=60)
GGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCCTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCA > SRR4302533.533700/1‑94 (MQ=60)
CTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAA < SRR4302533.6262751/94‑1 (MQ=60)
CTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCccttccaagattgacgcaacaaccgcccccgctcaacaccgcccaa > SRR4302533.4677590/1‑48 (MQ=60)
CTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAAC > SRR4302533.3064691/1‑94 (MQ=60)
TTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGCGTGAGCAATACACCTATTCGTCTTAACCCCGGCCAAC > SRR4302533.5597385/1‑94 (MQ=60)
TTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTAGGCAATACACCAATCCGTCTAAACCCCGCCCAAA > SRR4302533.1807828/1‑94 (MQ=60)
ACNCNGNTACATTCAAATCNCANTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTNAACCCCGGCCAACAACA < SRR4302533.3399744/94‑1 (MQ=60)
ACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACA > SRR4302533.1778566/1‑94 (MQ=60)
ACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAA < SRR4302533.5365834/94‑1 (MQ=60)
CGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAA < SRR4302533.3215808/94‑1 (MQ=60)
CGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCCAAAATTGAGCAATACACCTATGGGTCTAAACCCCGGCCAACAACAA > SRR4302533.1587928/1‑94 (MQ=60)
CGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAG < SRR4302533.6020850/94‑1 (MQ=60)
CGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGC > SRR4302533.4039733/1‑94 (MQ=60)
GGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCT < SRR4302533.1041259/94‑1 (MQ=60)
GGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCcacaaaaaaaag > SRR4302533.4679988/1‑82 (MQ=60)
GTCACATTCAAATGCGATTCTGCTAC‑AACC‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTG < SRR4302533.4465974/94‑1 (MQ=60)
GTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGACTGAGAAAAACACCTATGCGTCTAAACCCCGGCCAccaaacaactg > SRR4302533.254888/1‑83 (MQ=60)
GTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCCGCCAACAACAAACTGT > SRR4302533.1214133/1‑94 (MQ=60)
TCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCCTTCGAAGATTGAGCAAAACCCCTATGCGTCTAAACCCCCGCCAAACACAAGCCGT > SRR4302533.2086410/1‑94 (MQ=55)
CACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCcttc > SRR4302533.2854695/1‑90 (MQ=60)
CACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTC < SRR4302533.2753636/94‑1 (MQ=60)
CACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCG < SRR4302533.37071/94‑1 (MQ=60)
ACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATTCGTCTAAACCCCGGCCAACAACAAGCTGccc > SRR4302533.4799650/1‑91 (MQ=60)
ACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCccttcggagaattagcaacaaccctatgcgtctaaaacccgcccaaaaacaaacctgcg > SRR4302533.3529113/1‑35 (MQ=59)
ACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGA > SRR4302533.5145218/1‑94 (MQ=60)
ACATGCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCG < SRR4302533.2133935/94‑1 (MQ=60)
CATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGA < SRR4302533.3517563/94‑1 (MQ=60)
ATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAA < SRR4302533.1191172/94‑1 (MQ=60)
TTCAAATGCGATTCTGCTACAAA‑C‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAAT < SRR4302533.5955767/94‑1 (MQ=60)
TCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATT < SRR4302533.1904031/94‑1 (MQ=60)
TCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATT < SRR4302533.1892545/94‑1 (MQ=60)
TCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTC < SRR4302533.5518572/94‑1 (MQ=60)
CAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTAGGGGTCTAAACACCCGCCCACAACAAGCctacgaattc > SRR4302533.1355767/1‑84 (MQ=51)
AATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCATTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGT > SRR4302533.2847978/1‑94 (MQ=60)
AATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTT < SRR4302533.144521/94‑1 (MQ=60)
ATGCGATTGTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTT < SRR4302533.5888760/94‑1 (MQ=60)
ATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAAATTTAGCAAAACACCTATGCGTCTAAACCCCGCCCAACAACAAGCTGTCAAATTCTTT > SRR4302533.202004/1‑94 (MQ=60)
GCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTAC > SRR4302533.935495/1‑94 (MQ=60)
GCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACC < SRR4302533.6140104/94‑1 (MQ=60)
CGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACC < SRR4302533.3171107/94‑1 (MQ=60)
GATTCTGCTAC‑AACC‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCG < SRR4302533.5435856/94‑1 (MQ=60)
GATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCG < SRR4302533.1065986/94‑1 (MQ=60)
GATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCG > SRR4302533.2129833/1‑94 (MQ=60)
ATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGC > SRR4302533.3369288/1‑94 (MQ=60)
TCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCC > SRR4302533.1931251/1‑94 (MQ=60)
TGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCC > SRR4302533.1835642/1‑94 (MQ=60)
TGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCC < SRR4302533.3114909/94‑1 (MQ=60)
TGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCC < SRR4302533.2647592/94‑1 (MQ=60)
GCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAAAAACCAGCTGTCGAATTTGTTACCCGCCCCC > SRR4302533.2576699/1‑94 (MQ=60)
CTAC‑AA‑T‑‑CC‑C‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCC > SRR4302533.6231227/1‑94 (MQ=60)
CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGC > SRR4302533.351164/1‑94 (MQ=60)
CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGC > SRR4302533.4600319/1‑94 (MQ=60)
CCCC‑CCCCCGTTCGAAGATTGAGCAAAACACCTATGCGTCTAAACCCCGGCCAACAACAAACTGTCGAATTCGTTACCGGCCCCTGCCTGGTGC > SRR4302533.1325307/1‑94 (MQ=60)
CCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT > SRR4302533.5725149/1‑94 (MQ=60)
CC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCTG > SRR4302533.2046644/1‑94 (MQ=60)
|
GATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCTC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCTG > NC_000913/3958168‑3958354
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
