Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,475,662 |
A→G |
G71G (GGT→GGC) |
argI ← |
ornithine carbamoyltransferase 1 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,475,662 | 0 | A | G | 99.5%
| 694.1
/ NA
| 218 | G71G (GGT→GGC) | argI | ornithine carbamoyltransferase 1 |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (109/108); minor base T (0/1); total (109/109) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 226 total aligned reads displayed.
ATACATGCGACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCACCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTT > NC_000913/4475572‑4475751
|
tACATGCGACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGccc > 1:1259117/1‑93 (MQ=255)
tACATGCGACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGccc < 2:4247622/93‑1 (MQ=255)
tACATGCGACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGccc < 1:3196184/93‑1 (MQ=255)
tACATGCGACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGccc < 1:3127836/93‑1 (MQ=255)
tACATGCGACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGccc > 1:1991545/1‑93 (MQ=255)
cATGCGACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTg < 2:31035/93‑1 (MQ=255)
tGCGACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGTCCGAGATAAGTAACGCGAGCGCCCTGGt < 2:4142541/93‑1 (MQ=255)
cGACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCa > 2:133250/1‑93 (MQ=255)
gACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAGCGCGAGCGCCCTGGTCat > 2:6107713/1‑93 (MQ=255)
aCCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCata < 2:4857500/93‑1 (MQ=255)
aCCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCata > 1:4785543/1‑93 (MQ=255)
aCCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCata > 1:2229755/1‑93 (MQ=255)
aCCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCata < 1:1645075/93‑1 (MQ=255)
cAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATg > 2:3739780/1‑93 (MQ=255)
aaGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGc < 2:5831404/93‑1 (MQ=255)
aaGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGc < 1:3377356/93‑1 (MQ=255)
aGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCg > 1:3911391/1‑93 (MQ=255)
cACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGc < 2:2950439/93‑1 (MQ=255)
ccgcgGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCa < 2:3033430/92‑1 (MQ=255)
cgGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACt < 1:2934137/93‑1 (MQ=255)
gggCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACtt > 1:4867334/1‑93 (MQ=255)
gggCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACtt > 2:4621209/1‑93 (MQ=255)
gggCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACtt > 1:37174/1‑93 (MQ=255)
gggCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACtt > 2:6016881/1‑93 (MQ=255)
gggCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACtt > 2:1156724/1‑93 (MQ=255)
ggCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTc < 1:5028036/93‑1 (MQ=255)
ggCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTc < 2:2398361/93‑1 (MQ=255)
ggCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCCAGCGCCCTGGTCATATGCGGCAACtta > 1:3472828/1‑92 (MQ=255)
aGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGaa > 1:376599/1‑93 (MQ=255)
tgtCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGTGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTAGAAag > 2:5440670/1‑93 (MQ=255)
tgtCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAag < 2:4781547/93‑1 (MQ=255)
ttCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAaga < 2:1088737/92‑1 (MQ=255)
gtCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAaga < 2:3817765/93‑1 (MQ=255)
gtCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAaga < 1:4492431/93‑1 (MQ=255)
gtCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAaga < 1:2296142/93‑1 (MQ=255)
gtCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAaga < 1:2010989/93‑1 (MQ=255)
tCTTTAATTTCCTCTTTATGACCAATCTGGCTGCCGCTGGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAagag < 2:5650122/93‑1 (MQ=17)
tCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAagag < 2:1516044/93‑1 (MQ=255)
tCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAagag > 2:3001910/1‑93 (MQ=255)
tCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAagag > 1:2425301/1‑93 (MQ=255)
aaTCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCg < 1:786253/93‑1 (MQ=255)
aaTCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCg > 1:6133479/1‑93 (MQ=255)
aTCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCgg > 1:4305360/1‑93 (MQ=255)
tCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCggg < 2:1562267/93‑1 (MQ=255)
tCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCggg > 1:1528053/1‑93 (MQ=255)
cGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGt < 2:5286923/93‑1 (MQ=255)
cGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGt > 2:3722780/1‑93 (MQ=255)
gACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTa > 2:2658221/1‑93 (MQ=255)
gACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTa < 1:5965523/93‑1 (MQ=255)
gACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTa > 2:2963305/1‑93 (MQ=255)
tctTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTAcga < 1:946386/93‑1 (MQ=255)
tctTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTAcga > 1:5556945/1‑93 (MQ=255)
ctTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTAcgag < 2:1029485/93‑1 (MQ=255)
tttATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTAcgagt > 1:5637556/1‑93 (MQ=255)
tttATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTAcgagt > 1:4164282/1‑93 (MQ=255)
ttATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTAcgagtc > 1:1130141/1‑93 (MQ=255)
ttATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTAcgagtc < 1:5852919/93‑1 (MQ=255)
ttATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTAcgagtc < 1:3970929/93‑1 (MQ=255)
acgACCAATCTGGCTGCGGCGTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCGTCGGGTAcgagtcga < 2:1499807/91‑1 (MQ=18)
tGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTAcgagtcgag < 1:1735368/93‑1 (MQ=255)
gACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTAcgagtcgagt > 2:1420209/1‑93 (MQ=255)
gACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTAcgagtcgagt > 2:3178198/1‑93 (MQ=255)
gACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTAcgagtcgagt > 1:5138717/1‑93 (MQ=255)
aTCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCtttt > 2:4936652/1‑93 (MQ=255)
aTCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCtttt > 2:444484/1‑93 (MQ=255)
tGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCg < 1:3648907/93‑1 (MQ=255)
gCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGaa > 2:3251955/1‑93 (MQ=255)
gCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGaa > 1:4217368/1‑93 (MQ=255)
gCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGaa < 1:2887286/93‑1 (MQ=255)
cTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAg < 1:5280553/93‑1 (MQ=255)
tGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGa < 1:5044456/93‑1 (MQ=255)
tGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTCCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGa < 1:4553254/93‑1 (MQ=255)
gCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGAt < 2:5378249/93‑1 (MQ=255)
gCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGAt > 2:8499/1‑93 (MQ=255)
ccGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATg > 1:664117/1‑93 (MQ=255)
cGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGa < 1:5372221/93‑1 (MQ=255)
cTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAgc < 1:4182633/93‑1 (MQ=255)
tGGTCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAgcgc < 2:2925489/93‑1 (MQ=255)
tGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAgcgc < 2:3800694/93‑1 (MQ=255)
tGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAgcgc > 1:2784999/1‑93 (MQ=255)
gggCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGcgcg > 2:2073057/1‑93 (MQ=255)
ggCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGa < 2:5455814/93‑1 (MQ=255)
gCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGAt < 2:2159241/93‑1 (MQ=255)
gCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGAt < 1:276928/93‑1 (MQ=255)
cGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGt > 2:574150/1‑93 (MQ=255)
gagaTAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGtt > 1:1236186/1‑93 (MQ=255)
gagaTAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGtt > 1:2028764/1‑93 (MQ=255)
agaTAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGttt > 1:2485944/1‑93 (MQ=255)
gaTAAGTAGCGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGtttt < 1:183656/93‑1 (MQ=255)
gaTAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGtttt > 1:4611099/1‑93 (MQ=255)
tAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTa < 1:2109789/93‑1 (MQ=255)
tAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGAGCGATGTTTTTa > 2:3931909/1‑93 (MQ=255)
aGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTAcc > 2:3349029/1‑93 (MQ=255)
gTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCa < 2:2371964/93‑1 (MQ=255)
gTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCa < 2:3546866/93‑1 (MQ=255)
aCGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTg < 1:5788457/93‑1 (MQ=255)
cgcgAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGa < 2:1660324/93‑1 (MQ=255)
gcgAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAg > 1:6070791/1‑93 (MQ=255)
aGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGttt > 2:5850454/1‑93 (MQ=255)
aGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGttt < 1:1397249/93‑1 (MQ=255)
|
ATACATGCGACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCACCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTT > NC_000913/4475572‑4475751
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTCATACATGCGACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCACCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCT > NC_000913/4475569‑4475755
|
GTCATACATGCGACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCG > SRR4302533.5154864/1‑94 (MQ=60)
GTCATACATGCGACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCG < SRR4302533.1798952/94‑1 (MQ=60)
GTCATACATGCGACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCG < SRR4302533.4128228/94‑1 (MQ=60)
ATACATGCGACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCC > SRR4302533.2003749/1‑94 (MQ=60)
ATACATGCGACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCC > SRR4302533.1266648/1‑94 (MQ=60)
TACATGCGACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCT < SRR4302533.3215851/94‑1 (MQ=60)
TACATGCGACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCT < SRR4302533.4183640/94‑1 (MQ=60)
TACATGCGACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCT < SRR4302533.3147063/94‑1 (MQ=60)
ACATGCGACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTG > SRR4302533.1954403/1‑94 (MQ=60)
ACATGCGACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTG > SRR4302533.3800596/1‑94 (MQ=60)
CATGCGACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGG > SRR4302533.656724/1‑94 (MQ=60)
ATGCGACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGT > SRR4302533.6133913/1‑94 (MQ=60)
TGCGACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTC > SRR4302533.5825139/1‑94 (MQ=60)
GACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATA > SRR4302533.2243517/1‑94 (MQ=60)
GACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATA > SRR4302533.4814525/1‑94 (MQ=60)
ACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATAT < SRR4302533.1260031/94‑1 (MQ=60)
ACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATAT < SRR4302533.1655036/94‑1 (MQ=60)
ACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATAT < SRR4302533.3202276/94‑1 (MQ=60)
ACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATAT > SRR4302533.2032259/1‑94 (MQ=60)
CAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTCGTCATATGC > SRR4302533.5470637/1‑94 (MQ=60)
AAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCG < SRR4302533.4216346/94‑1 (MQ=60)
AAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCG < SRR4302533.4322757/94‑1 (MQ=60)
AAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCG > SRR4302533.3935278/1‑94 (MQ=60)
AAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCG < SRR4302533.3398207/94‑1 (MQ=60)
GCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGC < SRR4302533.5067858/94‑1 (MQ=60)
GCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGC < SRR4302533.388428/94‑1 (MQ=60)
CACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCA > SRR4302533.5603898/1‑94 (MQ=60)
CACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCA < SRR4302533.942112/94‑1 (MQ=60)
CACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCA > SRR4302533.2936004/1‑94 (MQ=60)
CGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTT > SRR4302533.37419/1‑94 (MQ=60)
CGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTT > SRR4302533.4896829/1‑94 (MQ=60)
CGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTT < SRR4302533.2952077/94‑1 (MQ=60)
GGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTC < SRR4302533.4907580/94‑1 (MQ=60)
GGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTC < SRR4302533.2849753/94‑1 (MQ=60)
GGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCCAGCGCCCTGGTCATATGCGGCAACTTA > SRR4302533.3494258/1‑94 (MQ=60)
GGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCG < SRR4302533.5058483/94‑1 (MQ=60)
CAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAA > SRR4302533.3985169/1‑94 (MQ=60)
CAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAA > SRR4302533.378872/1‑94 (MQ=60)
TGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGA > SRR4302533.5674639/1‑94 (MQ=60)
TGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGA > SRR4302533.1418101/1‑94 (MQ=60)
GTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAG < SRR4302533.2310361/94‑1 (MQ=60)
GTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAG < SRR4302533.4519637/94‑1 (MQ=60)
GTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAG < SRR4302533.2023378/94‑1 (MQ=60)
GTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAG > SRR4302533.2440273/1‑94 (MQ=60)
TTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCAT > SRR4302533.4548165/1‑94 (MQ=60)
TAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCG > SRR4302533.6170433/1‑94 (MQ=60)
AATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGG > SRR4302533.419147/1‑94 (MQ=60)
AATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGG > SRR4302533.4331264/1‑94 (MQ=60)
AATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGG < SRR4302533.790873/94‑1 (MQ=60)
ATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGG > SRR4302533.1537247/1‑94 (MQ=60)
TCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGT > SRR4302533.4872877/1‑94 (MQ=60)
TGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTTATATGCGGCAACTTCGAAAGAGCATCGGGTA < SRR4302533.6176347/94‑1 (MQ=60)
GACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTAC > SRR4302533.2738158/1‑94 (MQ=60)
GACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTAC > SRR4302533.2189463/1‑94 (MQ=60)
GACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTAC < SRR4302533.6001622/94‑1 (MQ=60)
ACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACG > SRR4302533.1599011/1‑94 (MQ=60)
ACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACG > SRR4302533.3741379/1‑94 (MQ=60)
CTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGA > SRR4302533.2577191/1‑94 (MQ=60)
CTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGA > SRR4302533.5590528/1‑94 (MQ=60)
CTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGA < SRR4302533.1307856/94‑1 (MQ=60)
TCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAG < SRR4302533.951950/94‑1 (MQ=60)
CTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGT > SRR4302533.5671644/1‑94 (MQ=60)
CTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGT > SRR4302533.4189511/1‑94 (MQ=60)
CTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGT < SRR4302533.982559/94‑1 (MQ=60)
TTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTC > SRR4302533.1136858/1‑94 (MQ=60)
TTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCTCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCG < SRR4302533.737399/94‑1 (MQ=60)
TTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCG < SRR4302533.3995111/94‑1 (MQ=60)
TTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCG < SRR4302533.5888306/94‑1 (MQ=60)
ATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAG < SRR4302533.1429184/94‑1 (MQ=60)
ATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAG > SRR4302533.3655473/1‑94 (MQ=60)
TGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGT > SRR4302533.1958277/1‑94 (MQ=60)
TGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGT < SRR4302533.1745894/94‑1 (MQ=60)
TGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGT > SRR4302533.4594627/1‑94 (MQ=60)
TGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGT > SRR4302533.5169771/1‑94 (MQ=60)
ACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCT < SRR4302533.3256445/94‑1 (MQ=60)
CCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTT < SRR4302533.2794324/94‑1 (MQ=60)
CCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTT < SRR4302533.5249691/94‑1 (MQ=60)
CAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTT < SRR4302533.2424785/94‑1 (MQ=60)
CAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTT > SRR4302533.2019585/1‑94 (MQ=60)
ATCTAGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTT > SRR4302533.4606676/1‑94 (MQ=60)
TGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGA < SRR4302533.3671343/94‑1 (MQ=60)
GGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAA > SRR4302533.4242878/1‑94 (MQ=60)
GCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAG < SRR4302533.2905037/94‑1 (MQ=60)
CTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGA < SRR4302533.5312195/94‑1 (MQ=60)
CTGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGA < SRR4302533.1662672/94‑1 (MQ=60)
TGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGAT < SRR4302533.2449255/94‑1 (MQ=60)
TGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGAT < SRR4302533.5074979/94‑1 (MQ=60)
TGCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTCCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGAT < SRR4302533.4580869/94‑1 (MQ=60)
GCCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATG > SRR4302533.668037/1‑94 (MQ=60)
CCGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGA > SRR4302533.1784455/1‑94 (MQ=60)
CGCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAG < SRR4302533.5404496/94‑1 (MQ=60)
GCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGC < SRR4302533.4208727/94‑1 (MQ=60)
GCTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGCCTTTTTCGCAGATGAGC > SRR4302533.2965308/1‑94 (MQ=60)
CTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCG < SRR4302533.6103472/94‑1 (MQ=60)
CTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCG < SRR4302533.4207964/94‑1 (MQ=60)
CTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCG > SRR4302533.2294959/1‑94 (MQ=60)
CTTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCG < SRR4302533.2201524/94‑1 (MQ=60)
TTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGC > SRR4302533.3566974/1‑94 (MQ=60)
TTGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGC > SRR4302533.2802110/1‑94 (MQ=60)
TGGGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCG > SRR4302533.115693/1‑94 (MQ=58)
GGCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGAT > SRR4302533.5102028/1‑94 (MQ=53)
GCCGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATG < SRR4302533.278616/94‑1 (MQ=50)
CGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTT < SRR4302533.5351562/94‑1 (MQ=45)
CGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTT > SRR4302533.1243574/1‑94 (MQ=45)
CGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTT > SRR4302533.4392463/1‑94 (MQ=45)
CGAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTT > SRR4302533.2041286/1‑94 (MQ=45)
GAGATAAGTAACGCGAGGGCCCGGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTT < SRR4302533.4767902/94‑1 (MQ=39)
GAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTT > SRR4302533.2501262/1‑94 (MQ=43)
GAGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTT > SRR4302533.308625/1‑94 (MQ=43)
ATATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTT > SRR4302533.5064055/1‑94 (MQ=35)
AGATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTT > SRR4302533.4639034/1‑94 (MQ=40)
GATAAGTAGCGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTT < SRR4302533.184798/94‑1 (MQ=34)
GATAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTT < SRR4302533.5890862/94‑1 (MQ=38)
TAAGTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTAC < SRR4302533.2122804/94‑1 (MQ=33)
GTAACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAG < SRR4302533.5428716/94‑1 (MQ=30)
ACGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGA < SRR4302533.5823430/94‑1 (MQ=38)
CGCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAG > SRR4302533.6107522/1‑94 (MQ=40)
GCGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGT < SRR4302533.210252/94‑1 (MQ=40)
CGAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTT < SRR4302533.3484320/94‑1 (MQ=40)
GAGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTT > SRR4302533.3676966/1‑94 (MQ=40)
AGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTG < SRR4302533.598666/94‑1 (MQ=43)
AGCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTG < SRR4302533.1405670/94‑1 (MQ=43)
GCGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGG < SRR4302533.3941185/94‑1 (MQ=46)
CGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGC < SRR4302533.1199229/94‑1 (MQ=52)
CGCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGC < SRR4302533.4090161/94‑1 (MQ=52)
GCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCT < SRR4302533.5591955/94‑1 (MQ=57)
GCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCT > SRR4302533.2077725/1‑94 (MQ=57)
GCCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCT < SRR4302533.5561488/94‑1 (MQ=57)
|
GTCATACATGCGACCAAGCACGCGGGCAGTGTCTTTAATCGACTCTTTATGACCAATCTGGCTGCCGCTTGGGCCGAGATAAGTAACGCGAGCACCCTGGTCATATGCGGCAACTTCGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCT > NC_000913/4475569‑4475755
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
