Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,511,365	A→G	L173P (CTT→CCT)	fecB ←	FecB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,511,365	0	A	G	100.0%	828.5 / NA	257	L173P (CTT→CCT)	fecB	FecB
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (136/121); total (136/121)

Only 100 of 271 total aligned reads displayed.

GCCAGCACGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAAGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCGATGATA  >  NC_000913/4511275‑4511454

gCCAGCACGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGgc                                                                                         <  1:1066367/93‑1 (MQ=255)

 gcAGCACGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGgct                                                                                        <  2:3887624/92‑1 (MQ=255)

  cAGCACGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGgctg                                                                                       <  2:2348267/93‑1 (MQ=255)

   aGCACGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGgctgg                                                                                      >  1:2623908/1‑93 (MQ=255)

   aGCACGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGgctgg                                                                                      <  2:1993006/93‑1 (MQ=255)

    gCACGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGgctggc                                                                                     >  1:5219149/1‑93 (MQ=255)

      aCGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGgctggctg                                                                                   <  1:2115697/93‑1 (MQ=255)

          tGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGccc                                                                               >  2:4347044/1‑93 (MQ=255)

            ccGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCAc                                                                             >  1:2191678/1‑93 (MQ=255)

            ccGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCAc                                                                             <  1:1203461/93‑1 (MQ=255)

            ccGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCAc                                                                             <  2:3090056/93‑1 (MQ=255)

             cGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACt                                                                            >  2:5798687/1‑93 (MQ=255)

             cGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACt                                                                            >  2:1218570/1‑93 (MQ=255)

              ggTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTg                                                                           >  1:4170871/1‑93 (MQ=255)

              ggTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTg                                                                           <  2:2728034/93‑1 (MQ=255)

               gTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTgc                                                                          >  1:441522/1‑93 (MQ=255)

               gTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTgc                                                                          >  2:1136878/1‑93 (MQ=255)

               gTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTgc                                                                          <  1:2279524/93‑1 (MQ=255)

               gTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTgc                                                                          >  2:3204307/1‑93 (MQ=255)

                  cAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGcc                                                                       <  2:328232/93‑1 (MQ=255)

                    ggTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCAt                                                                     >  2:5189008/1‑93 (MQ=255)

                    ggTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCAt                                                                     >  2:4484590/1‑93 (MQ=255)

                       ctcCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCct                                                                  >  1:2390488/1‑93 (MQ=255)

                        tcCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCctcctc                                                                 >  2:3373476/1‑93 (MQ=255)

                          cTGAGTGTGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCctctc                                                               >  1:1577269/1‑93 (MQ=255)

                          cTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCctctc                                                               >  2:2085608/1‑93 (MQ=255)

                           tGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCctctct                                                              <  1:5386888/93‑1 (MQ=255)

                           tGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCctctct                                                              <  2:1823586/93‑1 (MQ=255)

                            gggTAAGCAGGTTTAATTGCTTTTCGGGTGATGTGCCAAAGGCCGCGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCtt                                                             <  2:5855610/91‑1 (MQ=255)

                            gAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCtt                                                             >  2:4305056/1‑93 (MQ=255)

                             aGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCttt                                                            >  1:5334385/1‑93 (MQ=255)

                              gTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTa                                                           <  1:1314055/93‑1 (MQ=255)

                                aTGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTAtg                                                         >  2:158417/1‑93 (MQ=255)

                                aTGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTAtg                                                         <  2:3835631/93‑1 (MQ=255)

                                 tGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTAtgt                                                        >  1:1719153/1‑93 (MQ=255)

                                  gCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTAtgtt                                                       <  2:2532594/93‑1 (MQ=255)

                                    aGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTAtgttgt                                                     >  2:2624455/1‑93 (MQ=255)

                                    aGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTAtgttgt                                                     >  1:6297802/1‑93 (MQ=255)

                                     ggTTGAATTGCTTTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATgttgtt                                                    >  1:4596980/1‑93 (MQ=255)

                                     ggTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATgttgtt                                                    <  1:629321/93‑1 (MQ=255)

                                     ggTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATgttgtt                                                    >  1:819797/1‑93 (MQ=255)

                                      gTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTc                                                   >  2:2193017/1‑93 (MQ=255)

                                      gTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTc                                                   >  2:5416017/1‑93 (MQ=255)

                                       ttGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTcc                                                  >  1:4345543/1‑93 (MQ=255)

                                       ttGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTcc                                                  <  1:1027676/93‑1 (MQ=255)

                                        tGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCa                                                 <  1:5607221/93‑1 (MQ=255)

                                        tGAATTGCTGTGCGCGTGATGTGCCAAAGGCCCCGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCa                                                 <  1:3510872/93‑1 (MQ=255)

                                          aaTTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGa                                               >  1:594987/1‑93 (MQ=255)

                                              gCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTg                                           >  1:3927396/1‑93 (MQ=255)

                                              gCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTg                                           <  1:3823205/93‑1 (MQ=255)

                                              gCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTg                                           <  1:5842644/93‑1 (MQ=255)

                                               cTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGc                                          >  2:4235841/1‑93 (MQ=255)

                                               cTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGc                                          >  1:1497687/1‑93 (MQ=255)

                                                tGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGcc                                         <  2:6171216/93‑1 (MQ=255)

                                                 gTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCt                                        >  1:1612975/1‑93 (MQ=255)

                                                    cgcgTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCa                                     <  1:2486342/93‑1 (MQ=255)

                                                    cgcgTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCa                                     <  1:1773636/93‑1 (MQ=255)

                                                    cgcgTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCa                                     <  1:338918/93‑1 (MQ=255)

                                                     gcgTGATGTGCCAAAGGTCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCAt                                    >  2:1553248/1‑93 (MQ=255)

                                                      cgTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCAtc                                   >  1:354982/1‑93 (MQ=255)

                                                       gTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCAtct                                  >  1:1386800/1‑93 (MQ=255)

                                                       gTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCAtct                                  >  1:4486769/1‑93 (MQ=255)

                                                        tGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCAtctc                                 >  1:2378436/1‑93 (MQ=255)

                                                        tGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCAtctc                                 <  2:3590149/93‑1 (MQ=255)

                                                         gATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCAtctct                                >  1:5750280/1‑93 (MQ=255)

                                                         gATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCAtctct                                <  2:5561523/93‑1 (MQ=255)

                                                         gATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCAtctct                                <  2:329985/93‑1 (MQ=255)

                                                         gATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCAtctct                                >  1:2860365/1‑93 (MQ=255)

                                                          aTGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCAtctctc                               <  1:3629703/93‑1 (MQ=255)

                                                           tgtgCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCg                              >  2:5771059/1‑93 (MQ=255)

                                                            gtgCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGc                             >  2:132965/1‑93 (MQ=255)

                                                             tgCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCt                            >  1:1991944/1‑93 (MQ=255)

                                                                 aaaGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCttttt                        >  2:4125689/1‑93 (MQ=255)

                                                                 aaaGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCttttt                        <  2:2881663/93‑1 (MQ=255)

                                                                  aaGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCCGACGTGCCTGCATCTATCGCTTTTTa                       >  2:146024/1‑93 (MQ=255)

                                                                    ggCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTAcc                     <  1:249885/93‑1 (MQ=255)

                                                                    ggCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTAcc                     <  2:3975083/93‑1 (MQ=255)

                                                                     gCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTAccc                    <  2:6276434/93‑1 (MQ=255)

                                                                     gCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTAccc                    <  2:594023/93‑1 (MQ=255)

                                                                        aCGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACccacc                 >  2:2959694/1‑93 (MQ=255)

                                                                        aCGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACccacc                 >  2:6167514/1‑93 (MQ=255)

                                                                          gcgTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCAt               >  2:3755940/1‑93 (MQ=255)

                                                                           cgTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCAtt              <  1:1916315/93‑1 (MQ=255)

                                                                           cgTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCAtt              >  2:1069945/1‑93 (MQ=255)

                                                                            gtgtCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCAttt             >  2:1876367/1‑93 (MQ=255)

                                                                             tgtCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTc            >  1:6039122/1‑93 (MQ=255)

                                                                             tgtCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTc            <  2:4817174/93‑1 (MQ=255)

                                                                               tCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGc          >  2:4663994/1‑93 (MQ=255)

                                                                               tCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGc          >  1:4374593/1‑93 (MQ=255)

                                                                                  cTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCga       >  1:5068594/1‑93 (MQ=255)

                                                                                   tttGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCgat      <  2:441684/93‑1 (MQ=255)

                                                                                   tttGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCgat      >  1:6131581/1‑93 (MQ=255)

                                                                                    ttGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTAGCCACCATTTCGCCgatg     >  1:3112357/1‑93 (MQ=255)

                                                                                     tGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTCCCCACCATTTCGCCgatga    <  1:5498028/93‑1 (MQ=255)

                                                                                      gggAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCgatgtt   <  2:2787582/93‑3 (MQ=255)

                                                                                      gggAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCgatgat   <  1:4445216/93‑1 (MQ=255)

                                                                                       ggAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCGATGATa  >  1:4790684/1‑93 (MQ=255)

                                                                                       ggAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCGATGATa  <  2:4339614/93‑1 (MQ=255)

                                                                                       ggAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCGATGATa  <  1:2750295/93‑1 (MQ=255)

                                                                                       ggAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCGATGATa  <  2:3560647/93‑1 (MQ=255)

GCCAGCACGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAAGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCGATGATA  >  NC_000913/4511275‑4511454

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GAGGCCAGCACGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAAGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCGATGATAGCCG  >  NC_000913/4511272‑4511458

GAGGCCAGCACGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAG                                                                                               <  SRR4302533.1225192/94‑1 (MQ=60)

GAGGCCAGCACGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAG                                                                                               <  SRR4302533.3648027/94‑1 (MQ=60)

GAGGCCAGCACGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAG                                                                                               <  SRR4302533.413211/94‑1 (MQ=60)

 AGGCCAGCACGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGG                                                                                              <  SRR4302533.1621064/94‑1 (MQ=60)

   GCCAGCACGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCT                                                                                            <  SRR4302533.1072632/94‑1 (MQ=60)

   GCCAGCACGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCT                                                                                            <  SRR4302533.4447699/94‑1 (MQ=60)

    CCAGCACGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTG                                                                                           >  SRR4302533.4451652/1‑94 (MQ=60)

     CAGCACGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCACAGGCCACGCGTGTCCCTTTGGGAGGCTGG                                                                                          >  SRR4302533.1772303/1‑94 (MQ=60)

     CAGCACGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGG                                                                                          >  SRR4302533.2640013/1‑94 (MQ=60)

     CAGCACGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGG                                                                                          <  SRR4302533.173810/94‑1 (MQ=60)

     CAGCACGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGG                                                                                          >  SRR4302533.645565/1‑94 (MQ=60)

      AGCACGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGC                                                                                         <  SRR4302533.318589/94‑1 (MQ=60)

      AGCACGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGC                                                                                         >  SRR4302533.5493427/1‑94 (MQ=60)

      AGCACGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGC                                                                                         >  SRR4302533.5250562/1‑94 (MQ=60)

      AGCACGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGC                                                                                         <  SRR4302533.2017464/94‑1 (MQ=60)

        CACGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTG                                                                                       >  SRR4302533.1635692/1‑94 (MQ=60)

        CACGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTG                                                                                       <  SRR4302533.498222/94‑1 (MQ=60)

         ACGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGG                                                                                      <  SRR4302533.2128744/94‑1 (MQ=60)

          CGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGC                                                                                     <  SRR4302533.3787573/94‑1 (MQ=60)

           GCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCC                                                                                    >  SRR4302533.1543596/1‑94 (MQ=60)

            CTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCC                                                                                   <  SRR4302533.2667470/94‑1 (MQ=60)

            CTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCC                                                                                   >  SRR4302533.5370651/1‑94 (MQ=60)

             TGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCA                                                                                  >  SRR4302533.2488528/1‑94 (MQ=60)

              GCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCAC                                                                                 >  SRR4302533.2205182/1‑94 (MQ=60)

               CCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACT                                                                                >  SRR4302533.5823194/1‑94 (MQ=60)

               CCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACT                                                                                <  SRR4302533.1210693/94‑1 (MQ=60)

                CGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTG                                                                               >  SRR4302533.6017622/1‑94 (MQ=60)

                CGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTG                                                                               >  SRR4302533.4196142/1‑94 (MQ=60)

                CGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTG                                                                               <  SRR4302533.4368198/94‑1 (MQ=60)

                 GGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGC                                                                              >  SRR4302533.444161/1‑94 (MQ=60)

                 GGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGC                                                                              <  SRR4302533.4388669/94‑1 (MQ=60)

                  GTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCG                                                                             <  SRR4302533.2293641/94‑1 (MQ=60)

                        GTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCC                                                                       <  SRR4302533.2707646/94‑1 (MQ=60)

                         gctcctggggATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCT                                                                      <  SRR4302533.4506529/84‑1 (MQ=60)

                         TCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCT                                                                      >  SRR4302533.2405250/1‑94 (MQ=60)

                          CTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTC                                                                     <  SRR4302533.1664000/94‑1 (MQ=60)

                          CTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTC                                                                     >  SRR4302533.80700/1‑94 (MQ=60)

                          CTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTC                                                                     >  SRR4302533.5348016/1‑94 (MQ=60)

                          CTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGCCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTC                                                                     >  SRR4302533.5385933/1‑94 (MQ=60)

                            CCTGAGTGTGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTC                                                                   >  SRR4302533.1586766/1‑94 (MQ=60)

                            CCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTC                                                                   <  SRR4302533.2209839/94‑1 (MQ=60)

                             CTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCT                                                                  <  SRR4302533.1489697/94‑1 (MQ=60)

                              TGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTT                                                                 <  SRR4302533.5419253/94‑1 (MQ=60)

                              TGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTT                                                                 >  SRR4302533.2390594/1‑94 (MQ=60)

                               GAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTT                                                                >  SRR4302533.5366359/1‑94 (MQ=60)

                                AGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTA                                                               >  SRR4302533.1206759/1‑94 (MQ=60)

                                 GTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTAT                                                              <  SRR4302533.1321940/94‑1 (MQ=60)

                                 GTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTAT                                                              >  SRR4302533.5867462/1‑94 (MQ=60)

                                   ATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGT                                                            >  SRR4302533.1729578/1‑94 (MQ=60)

                                   ATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGT                                                            <  SRR4302533.1486385/94‑1 (MQ=60)

                                     GCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTG                                                          <  SRR4302533.131939/94‑1 (MQ=60)

                                      CAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGT                                                         >  SRR4302533.6335390/1‑94 (MQ=60)

                                       AGGTTGAATTGCTTTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTT                                                        >  SRR4302533.4624826/1‑94 (MQ=60)

                                       AGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTT                                                        >  SRR4302533.3478702/1‑94 (MQ=60)

                                       AGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTT                                                        >  SRR4302533.4072707/1‑94 (MQ=60)

                                       AGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTT                                                        >  SRR4302533.824604/1‑94 (MQ=60)

                                       AGGTTGAATTGCTGTGCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTT                                                        <  SRR4302533.889198/94‑1 (MQ=60)

                                        GGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCGCGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTC                                                       <  SRR4302533.1526937/94‑1 (MQ=60)

                                        GGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTC                                                       <  SRR4302533.2147023/94‑1 (MQ=60)

                                        GGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTC                                                       <  SRR4302533.633022/94‑1 (MQ=60)

                                         GTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCC                                                      >  SRR4302533.4371733/1‑94 (MQ=60)

                                          TTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCA                                                     <  SRR4302533.2468828/94‑1 (MQ=60)

                                          TTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCA                                                     <  SRR4302533.1033713/94‑1 (MQ=60)

                                           TGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAG                                                    <  SRR4302533.5641103/94‑1 (MQ=60)

                                           TGAATTGCTGTGCGCGTGATGTGCCAAAGGCCCCGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAG                                                    <  SRR4302533.3532514/94‑1 (MQ=60)

                                            GAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGA                                                   >  SRR4302533.598495/1‑94 (MQ=60)

                                             AATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGAC                                                  <  SRR4302533.6131077/94‑1 (MQ=60)

                                              ATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACG                                                 >  SRR4302533.5955910/1‑94 (MQ=60)

                                               TTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGT                                                <  SRR4302533.3446254/94‑1 (MQ=60)

                                               GTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGT                                                <  SRR4302533.3576138/94‑1 (MQ=60)

                                                TGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTG                                               >  SRR4302533.3951372/1‑94 (MQ=60)

                                                 GCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGC                                              <  SRR4302533.5877967/94‑1 (MQ=60)

                                                 GCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGC                                              <  SRR4302533.3846581/94‑1 (MQ=60)

                                                 GCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGC                                              >  SRR4302533.1506709/1‑94 (MQ=60)

                                                 GCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGC                                              >  SRR4302533.5251988/1‑94 (MQ=60)

                                                 GCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGC                                              <  SRR4302533.1394032/94‑1 (MQ=60)

                                                  CTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCC                                             >  SRR4302533.389192/1‑94 (MQ=60)

                                                  CTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCC                                             >  SRR4302533.2318678/1‑94 (MQ=60)

                                                   TGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCT                                            >  SRR4302533.1857649/1‑94 (MQ=60)

                                                   TGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCT                                            >  SRR4302533.1622751/1‑94 (MQ=60)

                                                   TGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCT                                            <  SRR4302533.153537/94‑1 (MQ=60)

                                                   TGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCT                                            >  SRR4302533.6111134/1‑94 (MQ=60)

                                                   TGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCT                                            >  SRR4302533.5058302/1‑94 (MQ=60)

                                                    GTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTG                                           <  SRR4302533.2615435/94‑1 (MQ=60)

                                                    GTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTG                                           >  SRR4302533.2542869/1‑94 (MQ=60)

                                                      TCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCA                                         <  SRR4302533.4219820/94‑1 (MQ=60)

                                                      TCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCA                                         <  SRR4302533.5519122/94‑1 (MQ=60)

                                                      TCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCA                                         <  SRR4302533.1850594/94‑1 (MQ=60)

                                                      TCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCA                                         <  SRR4302533.4484994/94‑1 (MQ=60)

                                                       CGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCAT                                        >  SRR4302533.5619705/1‑94 (MQ=60)

                                                       CGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCAT                                        <  SRR4302533.2501661/94‑1 (MQ=60)

                                                       CGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCAT                                        <  SRR4302533.1784438/94‑1 (MQ=60)

                                                       CGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCAT                                        <  SRR4302533.340984/94‑1 (MQ=60)

                                                        GCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATC                                       >  SRR4302533.357147/1‑94 (MQ=60)

                                                        GCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATC                                       >  SRR4302533.2957673/1‑94 (MQ=60)

                                                         CGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGTTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCT                                      <  SRR4302533.3376901/94‑1 (MQ=60)

                                                         CGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCT                                      >  SRR4302533.4679551/1‑94 (MQ=60)

                                                         CGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCT                                      >  SRR4302533.1395146/1‑94 (MQ=60)

                                                         CGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCT                                      >  SRR4302533.4513934/1‑94 (MQ=60)

                                                         CGTGATGTGCCAAAGGACACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGACATCCTCTCCTTATGTTGTTCCAGACGTGACTGCATCT                                      >  SRR4302533.781746/1‑94 (MQ=60)

                                                          GTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTC                                     >  SRR4302533.2393151/1‑94 (MQ=60)

                                                           TGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCT                                    >  SRR4302533.5784970/1‑94 (MQ=60)

                                                           TGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCT                                    <  SRR4302533.2506873/94‑1 (MQ=60)

                                                           TGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCT                                    >  SRR4302533.2877961/1‑94 (MQ=60)

                                                           TGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCT                                    <  SRR4302533.5777935/94‑1 (MQ=60)

                                                            GATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTC                                   <  SRR4302533.4122342/94‑1 (MQ=60)

                                                             ATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCG                                  <  SRR4302533.3652037/94‑1 (MQ=60)

                                                               GTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCT                                >  SRR4302533.1173699/1‑94 (MQ=60)

                                                               GTGCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCT                                >  SRR4302533.2004152/1‑94 (MQ=60)

                                                                 GCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTT                              <  SRR4302533.6330867/94‑1 (MQ=60)

                                                                 GCCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTT                              >  SRR4302533.4438604/1‑94 (MQ=60)

                                                                  CCAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTT                             >  SRR4302533.2400298/1‑94 (MQ=60)

                                                                   CAAAGGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTT                            >  SRR4302533.3747847/1‑94 (MQ=60)

                                                                     AAGGCCACGCGTGGCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTAC                          >  SRR4302533.6278914/1‑94 (MQ=60)

                                                                       GGCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCC                        <  SRR4302533.251426/94‑1 (MQ=60)

                                                                        GCCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCA                       <  SRR4302533.3534766/94‑1 (MQ=60)

                                                                         CCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCAC                      >  SRR4302533.1619360/1‑94 (MQ=60)

                                                                         CCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCAC                      <  SRR4302533.2892509/94‑1 (MQ=60)

                                                                         CCACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCAC                      >  SRR4302533.5708604/1‑94 (MQ=60)

                                                                          CACGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACC                     <  SRR4302533.6000718/94‑1 (MQ=60)

                                                                            CGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCAT                   >  SRR4302533.4707972/1‑94 (MQ=60)

                                                                            CGCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCAT                   >  SRR4302533.5172648/1‑94 (MQ=60)

                                                                             GCGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATT                  >  SRR4302533.240226/1‑94 (MQ=60)

                                                                              CGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTT                 <  SRR4302533.1928013/94‑1 (MQ=60)

                                                                              CGTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTT                 <  SRR4302533.2099351/94‑1 (MQ=60)

                                                                               GTGTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTC                >  SRR4302533.6075718/1‑94 (MQ=60)

                                                                                 GTCCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGC              >  SRR4302533.4400998/1‑94 (MQ=60)

                                                                                  TCCCTTGGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCC             <  SRR4302533.3631904/94‑1 (MQ=60)

                                                                                   CCCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCG            >  SRR4302533.1986031/1‑94 (MQ=60)

                                                                                    CCTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCGA           >  SRR4302533.5099200/1‑94 (MQ=60)

                                                                                     CTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCGAT          <  SRR4302533.216688/94‑1 (MQ=60)

                                                                                     CTTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCGAT          >  SRR4302533.6168525/1‑94 (MQ=60)

                                                                                      TTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTAGCCACCATTTCGCCGATG         >  SRR4302533.3131494/1‑94 (MQ=60)

                                                                                      TTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCGATG         >  SRR4302533.2789177/1‑94 (MQ=60)

                                                                                      TTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCGATG         >  SRR4302533.1071822/1‑94 (MQ=60)

                                                                                      TTTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCGATG         <  SRR4302533.1306905/94‑1 (MQ=60)

                                                                                       TTGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCGATGA        <  SRR4302533.4397115/94‑1 (MQ=60)

                                                                                        TGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTCCCCACCATTTCGCCGATGAT       <  SRR4302533.5531187/94‑1 (MQ=60)

                                                                                        TGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCGATGAT       <  SRR4302533.4303428/94‑1 (MQ=60)

                                                                                        TGGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCGATGAT       >  SRR4302533.4614157/1‑94 (MQ=60)

                                                                                         GGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCGATGATA      <  SRR4302533.4472103/94‑1 (MQ=60)

                                                                                         GGGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCGATGATA      >  SRR4302533.4819708/1‑94 (MQ=60)

                                                                                          GGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCGATGATAG     <  SRR4302533.2767154/94‑1 (MQ=60)

                                                                                          GGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCGATGATAG     >  SRR4302533.5652233/1‑94 (MQ=60)

                                                                                          GGAGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCGATGATAG     <  SRR4302533.6323720/94‑1 (MQ=60)

                                                                                            AGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCGATGATAGCC   <  SRR4302533.4077854/94‑1 (MQ=60)

                                                                                            AGGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCGATGATAGCC   >  SRR4302533.4285971/1‑94 (MQ=60)

                                                                                             GGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCGATGATAGCCG  <  SRR4302533.4578748/94‑1 (MQ=60)

GAGGCCAGCACGCTGCCGGTCCAGGTCTCCTGAGTATGCAGGTTGAATTGCTGTTCGCGTGATGTGCCAAAGGCCACGCGTGTCCCTTTGGGAAGCTGGCTGGCCCACTGCGCCATCCTCTCTTTATGTTGTTCCAGACGTGCCTGCATCTCTCGCTTTTTACCCACCATTTCGCCGATGATAGCCG  >  NC_000913/4511272‑4511458

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`