Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,593,528 T→C intergenic (‑215/‑16) yjjM ← / → yjjN hypothetical protein/putative oxidoreductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,593,5280TC100.0% 945.2 / NA 284intergenic (‑215/‑16)yjjM/yjjNhypothetical protein/putative oxidoreductase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (172/112);  total (172/112)

Only 100 of 291 total aligned reads displayed.

TCCATTAAAACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATATCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTCTGGAAACAACG  >  NC_000913/4593438‑4593617
                                                                                          |                                                                                         
tCCATTAAAACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCt                                                                                         >  1:669302/1‑93 (MQ=255)
  cATTAAAACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTaa                                                                                       <  1:1015954/93‑1 (MQ=255)
   aTTAAAACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTCAg                                                                                      >  2:1997055/1‑93 (MQ=255)
   aTTAAAACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAg                                                                                      >  1:2875970/1‑93 (MQ=255)
    ttAAAACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAgg                                                                                     <  1:1263936/93‑1 (MQ=255)
     tAAAACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGc                                                                                    >  1:2551521/1‑93 (MQ=255)
       aaaCCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGcaa                                                                                  <  1:5829706/93‑1 (MQ=255)
       aaaCCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGcaa                                                                                  >  1:4533218/1‑93 (MQ=255)
        aaCCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGcaac                                                                                 <  2:4902807/93‑1 (MQ=255)
         aCCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGcaaca                                                                                >  1:5961065/1‑93 (MQ=255)
         aCCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGcaaca                                                                                >  1:2561699/1‑93 (MQ=255)
          cccGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGcaacaa                                                                               >  2:2126465/1‑93 (MQ=255)
           ccGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACaaa                                                                              <  1:5160124/93‑1 (MQ=255)
           ccGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACaaa                                                                              >  1:171424/1‑93 (MQ=255)
             gATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACaaaaa                                                                            >  1:2346814/1‑93 (MQ=255)
             gATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACaaaaa                                                                            >  2:3648184/1‑93 (MQ=255)
             gATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACaaaaa                                                                            >  1:3279440/1‑93 (MQ=255)
              aTTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAg                                                                           >  2:5559830/1‑93 (MQ=255)
               tttAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGt                                                                          >  2:3741197/1‑93 (MQ=255)
               tttAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGt                                                                          <  1:542908/93‑1 (MQ=255)
               tttAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGt                                                                          <  1:3668548/93‑1 (MQ=255)
                ttAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTg                                                                         >  2:5966428/1‑93 (MQ=255)
                ttAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTg                                                                         <  2:883289/93‑1 (MQ=255)
                 ttaaaaATTTTTATGCGTGTGTTTTTACAAAAAAAATTTTTCGGTTCCCTGCCATTTTTTATTTTTATTGATACCTAAAGCAACAAAAAGTgg                                                                        >  2:1872838/3‑93 (MQ=255)
                  aaaaCATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGga                                                                       <  1:2135475/93‑1 (MQ=255)
                  aaaaCATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGga                                                                       <  1:2822079/93‑1 (MQ=255)
                   aaaCATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGgag                                                                      <  2:2625594/93‑1 (MQ=255)
                   aaaCATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGgag                                                                      >  2:1732806/1‑93 (MQ=255)
                    aaCATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGgaga                                                                     >  2:1130694/1‑93 (MQ=255)
                      cATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGc                                                                   <  2:2883086/93‑1 (MQ=255)
                       aTTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGcc                                                                  >  2:4457078/1‑93 (MQ=255)
                        tttttATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCg                                                                 >  1:3538283/1‑93 (MQ=255)
                        tttttATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCg                                                                 <  2:2193036/93‑1 (MQ=255)
                           ttATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAAt                                                              <  2:2329199/93‑1 (MQ=255)
                            tATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCCTTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATc                                                             >  2:834196/1‑93 (MQ=255)
                            tATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGACGAATc                                                             >  2:977365/1‑93 (MQ=255)
                             aTGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCa                                                            <  2:2772076/93‑1 (MQ=255)
                               gCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATg                                                          <  1:556293/93‑1 (MQ=255)
                               gCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATg                                                          <  2:451797/93‑1 (MQ=255)
                                 gtgtgtTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTc                                                        <  1:4104501/93‑1 (MQ=255)
                                  tgtgtTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCt                                                       >  2:6055929/1‑93 (MQ=255)
                                   gtgtTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTa                                                      <  1:1339920/93‑1 (MQ=255)
                                   gtgtTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTa                                                      <  2:3179267/93‑1 (MQ=255)
                                   gtgtTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTa                                                      >  2:1947229/1‑93 (MQ=255)
                                     gtTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACg                                                    <  1:3655771/93‑1 (MQ=255)
                                        ttCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATg                                                 >  2:1509955/1‑93 (MQ=255)
                                         tCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGa                                                <  2:2435485/93‑1 (MQ=255)
                                         tCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGa                                                >  2:6241846/1‑93 (MQ=255)
                                          cacaAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGaa                                               >  1:2011920/1‑93 (MQ=255)
                                             aaaaaaGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGt                                            >  2:5033946/1‑93 (MQ=255)
                                              aaaaaGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGtt                                           >  1:3044302/1‑93 (MQ=255)
                                              aaaaaGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGtt                                           <  2:5094401/93‑1 (MQ=255)
                                                aaaGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGtttt                                         >  2:4240771/1‑93 (MQ=255)
                                                aaaGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGtttt                                         >  1:5621791/1‑93 (MQ=255)
                                                aaaGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGtttt                                         >  2:4019136/1‑93 (MQ=255)
                                                aaaGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGtttt                                         <  2:657008/93‑1 (MQ=255)
                                                 aaGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTa                                        >  2:3539371/1‑93 (MQ=255)
                                                 aaGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTa                                        >  1:446370/1‑93 (MQ=255)
                                                   gATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAAt                                      >  1:5686007/1‑93 (MQ=255)
                                                   gATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAAt                                      >  1:2990729/1‑93 (MQ=255)
                                                   gATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAAt                                      <  2:507644/93‑1 (MQ=255)
                                                   gATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAAt                                      >  1:1837003/1‑93 (MQ=255)
                                                    aTTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAAtt                                     <  1:4200208/93‑1 (MQ=255)
                                                     ttttCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAAttt                                    <  1:139606/93‑1 (MQ=255)
                                                        tccgttccgCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGcc                                 <  1:1080977/93‑1 (MQ=255)
                                                            ttccgCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCcagca                             <  1:3397307/93‑1 (MQ=255)
                                                            ttccgCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCcagca                             <  2:1272459/93‑1 (MQ=255)
                                                            gcccgCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGCACAGACGAATCATGTCTCCGATGAATGTTTTAATTTGCcagca                             <  2:6185812/91‑1 (MQ=255)
                                                             tccgCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCcagcag                            >  1:4813908/1‑93 (MQ=255)
                                                              ccgCTGCCATTTTTCATTTTCATTGGTACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCagcagc                           >  1:3123957/1‑93 (MQ=255)
                                                              ccgCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCagcagc                           <  2:3352291/93‑1 (MQ=255)
                                                               cgCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGcc                          >  1:4669602/1‑93 (MQ=255)
                                                                 cTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGa                        >  2:1837366/1‑93 (MQ=255)
                                                                  tGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGaa                       >  2:3583164/1‑93 (MQ=255)
                                                                  tGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGaa                       <  1:893422/93‑1 (MQ=255)
                                                                   gCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGaaa                      >  1:6103137/1‑93 (MQ=255)
                                                                   gCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGaaa                      >  2:3426941/1‑93 (MQ=255)
                                                                   gCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGaaa                      >  2:580122/1‑93 (MQ=255)
                                                                   gCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGaaa                      >  1:816586/1‑93 (MQ=255)
                                                                   gCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGaaa                      >  2:5522651/1‑93 (MQ=255)
                                                                     cATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGa                    <  1:381406/93‑1 (MQ=255)
                                                                     cATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGa                    >  1:4405391/1‑93 (MQ=255)
                                                                       tttttCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAAt                  >  2:5374149/1‑93 (MQ=255)
                                                                        ttttcattttcaTTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAAtt                 >  2:4317256/1‑93 (MQ=255)
                                                                        ttttcattttcaTTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAAtt                 >  1:547523/1‑93 (MQ=255)
                                                                         tttcattttcatTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTa                >  2:165351/1‑93 (MQ=255)
                                                                         tttcattttcatTGATACCTAAGGCAACAAAAAGGGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTa                >  1:2800410/1‑93 (MQ=255)
                                                                           tcattttcattGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGt              <  2:4797529/93‑1 (MQ=255)
                                                                           tcattttcattGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGt              >  2:5266959/1‑93 (MQ=255)
                                                                           tcattttcattGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGt              <  1:4073397/93‑1 (MQ=255)
                                                                           tcagtttcattGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGt              <  2:361890/93‑1 (MQ=255)
                                                                            cattttcattGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTc             <  1:4985640/93‑1 (MQ=255)
                                                                            cattttcattGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTc             <  1:574245/93‑1 (MQ=255)
                                                                                 tcattGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTCTGGaa        <  1:276359/93‑1 (MQ=255)
                                                                                  cattGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTCTGGaaa       >  1:998464/1‑93 (MQ=255)
                                                                                     tGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTCTGGAaacaa    <  2:673801/93‑1 (MQ=255)
                                                                                      gATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTCTGGAaacaac   >  1:5280849/1‑93 (MQ=255)
                                                                                      gATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTCTGGAaacaac   <  2:3078169/93‑1 (MQ=255)
                                                                                      gATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTCTGGAaacaac   <  2:3018477/93‑1 (MQ=255)
                                                                                       atacCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTCTGGAAACAAcg  <  1:1904846/93‑1 (MQ=255)
                                                                                          |                                                                                         
TCCATTAAAACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATATCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTCTGGAAACAACG  >  NC_000913/4593438‑4593617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AGTCCATTAAAACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATATCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTCTGGAAACAACGC  >  NC_000913/4593436‑4593618
                                                                                            |                                                                                          
AGTCCATTAAAACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACC                                                                                           >  SRR4302533.1117286/1‑94 (MQ=60)
 GTCCATTAAAACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCT                                                                                          >  SRR4302533.673257/1‑94 (MQ=60)
    CATTAAAACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAG                                                                                       <  SRR4302533.1021926/94‑1 (MQ=60)
    CATTAAAACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAG                                                                                       >  SRR4302533.2893667/1‑94 (MQ=60)
    CATTAAAACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAG                                                                                       >  SRR4302533.2405211/1‑94 (MQ=60)
     ATTAAAACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGG                                                                                      <  SRR4302533.3041423/94‑1 (MQ=60)
     ATTAAAACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGG                                                                                      >  SRR4302533.5845210/1‑94 (MQ=60)
     ATTAAAACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCAGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGG                                                                                      >  SRR4302533.2740876/1‑94 (MQ=60)
      TTAAAACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGC                                                                                     <  SRR4302533.1271500/94‑1 (MQ=60)
      TTAAAACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGC                                                                                     >  SRR4302533.2567224/1‑94 (MQ=60)
      TTAAAACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGC                                                                                     >  SRR4302533.572900/1‑94 (MQ=60)
        AAAACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAA                                                                                   >  SRR4302533.4560666/1‑94 (MQ=60)
        AAAACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAA                                                                                   >  SRR4302533.2576297/1‑94 (MQ=60)
         AAACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAAC                                                                                  <  SRR4302533.5864935/94‑1 (MQ=60)
         AAACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAAC                                                                                  >  SRR4302533.5516939/1‑94 (MQ=60)
         AAACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAAC                                                                                  >  SRR4302533.3084027/1‑94 (MQ=60)
          AACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACA                                                                                 >  SRR4302533.5079076/1‑94 (MQ=60)
          AACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACA                                                                                 >  SRR4302533.2577472/1‑94 (MQ=60)
          AACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACA                                                                                 >  SRR4302533.1354799/1‑94 (MQ=60)
          AACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACA                                                                                 >  SRR4302533.5997128/1‑94 (MQ=60)
           ACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAA                                                                                >  SRR4302533.233183/1‑94 (MQ=60)
           ACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAA                                                                                >  SRR4302533.4986599/1‑94 (MQ=60)
            CCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAA                                                                               >  SRR4302533.172505/1‑94 (MQ=60)
             CCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAA                                                                              >  SRR4302533.2825814/1‑94 (MQ=60)
             CCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAA                                                                              <  SRR4302533.5191266/94‑1 (MQ=60)
              CGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAA                                                                             >  SRR4302533.2361337/1‑94 (MQ=60)
              CGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAA                                                                             >  SRR4302533.3299686/1‑94 (MQ=60)
              CGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAA                                                                             <  SRR4302533.4033929/94‑1 (MQ=60)
                ATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGT                                                                           <  SRR4302533.4530719/94‑1 (MQ=60)
                ATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGT                                                                           <  SRR4302533.802397/94‑1 (MQ=60)
                 TTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTG                                                                          <  SRR4302533.1892153/94‑1 (MQ=60)
                 TTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTG                                                                          <  SRR4302533.3691095/94‑1 (MQ=60)
                 TTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTG                                                                          <  SRR4302533.546131/94‑1 (MQ=60)
                 TTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTG                                                                          <  SRR4302533.5543965/94‑1 (MQ=60)
                 TTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTG                                                                          >  SRR4302533.2797453/1‑94 (MQ=60)
                  TTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGG                                                                         >  SRR4302533.3516285/1‑94 (MQ=60)
                  TTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGG                                                                         <  SRR4302533.1094824/94‑1 (MQ=60)
                   TAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGA                                                                        >  SRR4302533.5233148/1‑94 (MQ=60)
                    AAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAG                                                                       <  SRR4302533.707188/94‑1 (MQ=60)
                    AAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAG                                                                       <  SRR4302533.2839448/94‑1 (MQ=60)
                    AAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAG                                                                       >  SRR4302533.2702116/1‑94 (MQ=60)
                    AAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAG                                                                       <  SRR4302533.2148641/94‑1 (MQ=60)
                     AAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGA                                                                      <  SRR4302533.4390040/94‑1 (MQ=60)
                     AAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGA                                                                      >  SRR4302533.4459010/1‑94 (MQ=60)
                     AAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGA                                                                      <  SRR4302533.3679151/94‑1 (MQ=60)
                     AAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGA                                                                      >  SRR4302533.3604840/1‑94 (MQ=60)
                     AAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGA                                                                      <  SRR4302533.564149/94‑1 (MQ=60)
                      AACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAG                                                                     <  SRR4302533.835780/94‑1 (MQ=60)
                      AACATGTTTATGCGTGTGTTTTCACAATAACGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAG                                                                     <  SRR4302533.2015665/94‑1 (MQ=60)
                        CATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCC                                                                   >  SRR4302533.4132743/1‑94 (MQ=60)
                        CATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCC                                                                   <  SRR4302533.841327/94‑1 (MQ=60)
                        CATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCC                                                                   <  SRR4302533.5392170/94‑1 (MQ=60)
                         ATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCG                                                                  >  SRR4302533.3560088/1‑94 (MQ=60)
                         ATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCG                                                                  >  SRR4302533.3729625/1‑94 (MQ=60)
                          TTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGA                                                                 >  SRR4302533.2869100/1‑94 (MQ=60)
                           TTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAA                                                                >  SRR4302533.3872636/1‑94 (MQ=60)
                             TTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATC                                                              >  SRR4302533.4590258/1‑94 (MQ=60)
                             TTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATC                                                              <  SRR4302533.3330296/94‑1 (MQ=60)
                              TATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCA                                                             >  SRR4302533.450367/1‑94 (MQ=60)
                                TGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCAAATCATG                                                           >  SRR4302533.6317913/1‑94 (MQ=60)
                                 GCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGT                                                          <  SRR4302533.559594/94‑1 (MQ=60)
                                  CGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTC                                                         <  SRR4302533.3205338/94‑1 (MQ=60)
                                  CGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTC                                                         <  SRR4302533.2942816/94‑1 (MQ=60)
                                   GTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCT                                                        <  SRR4302533.4129466/94‑1 (MQ=60)
                                   GTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCT                                                        >  SRR4302533.5653998/1‑94 (MQ=60)
                                   GTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCT                                                        <  SRR4302533.1863431/94‑1 (MQ=60)
                                   GTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCT                                                        >  SRR4302533.6170094/1‑94 (MQ=60)
                                   GTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCT                                                        <  SRR4302533.173283/94‑1 (MQ=60)
                                   GTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGACGAATCATGTCT                                                        >  SRR4302533.5477247/1‑94 (MQ=60)
                                    TGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTA                                                       <  SRR4302533.2992803/94‑1 (MQ=60)
                                     GTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTAC                                                      <  SRR4302533.1347987/94‑1 (MQ=60)
                                     GTGTTTGCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTAC                                                      <  SRR4302533.5479692/94‑1 (MQ=60)
                                      TGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACG                                                     >  SRR4302533.4277189/1‑94 (MQ=60)
                                       GTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGA                                                    <  SRR4302533.3678244/94‑1 (MQ=60)
                                       GTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCACTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGA                                                    <  SRR4302533.4115317/94‑1 (MQ=60)
                                         TTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATG                                                  >  SRR4302533.4432521/1‑94 (MQ=60)
                                           TCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAA                                                >  SRR4302533.2024313/1‑94 (MQ=60)
                                            CACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAAT                                               >  SRR4302533.1293684/1‑94 (MQ=60)
                                             ACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATG                                              >  SRR4302533.5680990/1‑94 (MQ=60)
                                              CAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGT                                             >  SRR4302533.2410240/1‑94 (MQ=60)
                                               AAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTT                                            >  SRR4302533.176588/1‑94 (MQ=60)
                                               AAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTT                                            >  SRR4302533.3062936/1‑94 (MQ=60)
                                               AAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTT                                            >  SRR4302533.644881/1‑94 (MQ=60)
                                               AAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTT                                            >  SRR4302533.131528/1‑94 (MQ=60)
                                                AAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTT                                           <  SRR4302533.1354680/94‑1 (MQ=60)
                                                AAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTT                                           <  SRR4302533.5919392/94‑1 (MQ=60)
                                                 AAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTT                                          <  SRR4302533.4766300/94‑1 (MQ=60)
                                                 AAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTT                                          >  SRR4302533.5655773/1‑94 (MQ=60)
                                                  AAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTA                                         >  SRR4302533.449043/1‑94 (MQ=60)
                                                   AAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAA                                        >  SRR4302533.2800125/1‑94 (MQ=60)
                                                   AAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAA                                        >  SRR4302533.1928909/1‑94 (MQ=60)
                                                    AGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAAT                                       >  SRR4302533.1848206/1‑94 (MQ=60)
                                                    AGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAAT                                       >  SRR4302533.5720351/1‑94 (MQ=60)
                                                    AGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAAT                                       >  SRR4302533.3009021/1‑94 (MQ=60)
                                                    AGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAAT                                       <  SRR4302533.978223/94‑1 (MQ=60)
                                                     GATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATT                                      >  SRR4302533.1666835/1‑94 (MQ=60)
                                                     GATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATT                                      >  SRR4302533.2033075/1‑94 (MQ=60)
                                                      ATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTT                                     <  SRR4302533.4225625/94‑1 (MQ=60)
                                                      ATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTT                                     >  SRR4302533.5838377/1‑94 (MQ=60)
                                                      ATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTT                                     >  SRR4302533.1578853/1‑94 (MQ=60)
                                                      ATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTT                                     >  SRR4302533.6093542/1‑94 (MQ=60)
                                                       TTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTG                                    <  SRR4302533.140493/94‑1 (MQ=60)
                                                        TTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGC                                   >  SRR4302533.1044180/1‑94 (MQ=60)
                                                          TCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCA                                 >  SRR4302533.5068697/1‑94 (MQ=60)
                                                          TCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCA                                 <  SRR4302533.1087354/94‑1 (MQ=60)
                                                          TCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCA                                 <  SRR4302533.3487561/94‑1 (MQ=60)
                                                          TCCGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCA                                 >  SRR4302533.4168928/1‑94 (MQ=60)
                                                            CGTTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGC                               >  SRR4302533.4835132/1‑94 (MQ=60)
                                                              TTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAG                             >  SRR4302533.4843083/1‑94 (MQ=60)
                                                              TTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAG                             <  SRR4302533.3418286/94‑1 (MQ=60)
                                                              TTCCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAG                             <  SRR4302533.3113270/94‑1 (MQ=60)
                                                               TCCGCTGCCATTTTTCATTTTCATTGGTACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGC                            >  SRR4302533.3143160/1‑94 (MQ=60)
                                                                CCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCC                           >  SRR4302533.4697900/1‑94 (MQ=60)
                                                                CCGCTGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCC                           <  SRR4302533.5748546/94‑1 (MQ=60)
                                                                    TGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAA                       >  SRR4302533.6139979/1‑94 (MQ=60)
                                                                    TGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAA                       >  SRR4302533.1237989/1‑94 (MQ=60)
                                                                    TGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAA                       >  SRR4302533.821372/1‑94 (MQ=60)
                                                                    TGCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAA                       <  SRR4302533.898673/94‑1 (MQ=60)
                                                                     GCCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAG                      >  SRR4302533.5457584/1‑94 (MQ=60)
                                                                      CCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGA                     >  SRR4302533.4431991/1‑94 (MQ=60)
                                                                      CCATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGA                     <  SRR4302533.3690517/94‑1 (MQ=60)
                                                                       CATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAA                    >  SRR4302533.2203803/1‑94 (MQ=60)
                                                                       CATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAA                    <  SRR4302533.383704/94‑1 (MQ=60)
                                                                       CATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAA                    >  SRR4302533.3803716/1‑94 (MQ=60)
                                                                        ATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAAT                   >  SRR4302533.3026491/1‑94 (MQ=60)
                                                                        ATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAAT                   >  SRR4302533.5917630/1‑94 (MQ=60)
                                                                        ATTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAAT                   >  SRR4302533.5709822/1‑94 (MQ=60)
                                                                         TTTTTCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATT                  >  SRR4302533.550774/1‑94 (MQ=60)
                                                                          TTTTCATTTTCATTGATACCTAAGGCAACAAAAAGGGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTA                 >  SRR4302533.2817633/1‑94 (MQ=60)
                                                                             TCATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTC              <  SRR4302533.4098195/94‑1 (MQ=60)
                                                                              CATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTCT             <  SRR4302533.577635/94‑1 (MQ=60)
                                                                              CATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTCT             <  SRR4302533.5015869/94‑1 (MQ=60)
                                                                              CATTTTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTCT             <  SRR4302533.466228/94‑1 (MQ=60)
                                                                                  TTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTCTGGAA         <  SRR4302533.2834235/94‑1 (MQ=60)
                                                                                  TTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTCTGGAA         >  SRR4302533.5232198/1‑94 (MQ=60)
                                                                                  TTCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTCTGGAA         <  SRR4302533.4124590/94‑1 (MQ=60)
                                                                                   TCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTCTGGAAA        <  SRR4302533.278041/94‑1 (MQ=60)
                                                                                   TCATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTCTGGAAA        >  SRR4302533.1004292/1‑94 (MQ=60)
                                                                                     ATTGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTCTGGAAACA      >  SRR4302533.2862494/1‑94 (MQ=60)
                                                                                       TGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTCTGGAAACAAC    <  SRR4302533.3316584/94‑1 (MQ=60)
                                                                                       TGATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTCTGGAAACAAC    >  SRR4302533.5312492/1‑94 (MQ=60)
                                                                                        GATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTCTGGAAACAACG   <  SRR4302533.2139574/94‑1 (MQ=60)
                                                                                        GATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTCTGGAAACAACG   <  SRR4302533.929901/94‑1 (MQ=60)
                                                                                         ATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTCTGGAAACAACGC  <  SRR4302533.321689/94‑1 (MQ=60)
                                                                                         ATACCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTCTGGAAACAACGC  <  SRR4302533.1916468/94‑1 (MQ=60)
                                                                                            |                                                                                          
AGTCCATTAAAACCCGATTTAAAACATTTTTATGCGTGTGTTTTCACAAAAAAGATTTTCCGTTCCGCTGCCATTTTTCATTTTCATTGATATCTAAGGCAACAAAAAGTGGAGAGCCGAATCATGTCTACGATGAATGTTTTAATTTGCCAGCAGCCGAAAGAATTAGTCTGGAAACAACGC  >  NC_000913/4593436‑4593618

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑