Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,606,400	G→A	Q62Q (CAG→CAA)	yjjG →	putative phosphatase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,606,400	0	G	A	100.0%	978.0 / NA	266	Q62Q (CAG→CAA)	yjjG	putative phosphatase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (142/124); total (142/124)

Only 100 of 276 total aligned reads displayed.

CACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAGCTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCGGA  >  NC_000913/4606310‑4606489

cACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACt                                                                                         >  2:4828924/1‑93 (MQ=255)

  ccTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTc                                                                                       <  2:3911975/93‑1 (MQ=255)

  ccTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTc                                                                                       >  2:651548/1‑93 (MQ=255)

  ccTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTc                                                                                       >  1:4054973/1‑93 (MQ=255)

   cTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCa                                                                                      <  1:69477/93‑1 (MQ=255)

   cTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCa                                                                                      >  2:233835/1‑93 (MQ=255)

    tttACCGCTGAAGATTTTCAGGACTATCAGGCCGTTACCAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAg                                                                                     <  1:1058755/93‑1 (MQ=255)

       cccGCTAAATATTTGCAGAATTACCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCAc                                                                                  <  2:5334909/92‑1 (MQ=255)

       aCCGCTGAAGATTTTCAGGACTATCAGGACGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCAc                                                                                  >  2:1915744/1‑93 (MQ=255)

         cGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACgg                                                                                <  2:5757534/93‑1 (MQ=255)

          gCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACggg                                                                               <  2:3756536/93‑1 (MQ=255)

           cTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGc                                                                              >  1:2370993/1‑93 (MQ=255)

            tGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCg                                                                             >  2:2582019/1‑93 (MQ=255)

            tGAAGATTTTCAGGACTATCAGGACGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCg                                                                             >  1:3781510/1‑93 (MQ=255)

             gAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCgg                                                                            >  1:3271309/1‑93 (MQ=255)

             gAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCgg                                                                            <  1:260006/93‑1 (MQ=255)

                 tttttCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTg                                                                        <  2:3283022/92‑1 (MQ=255)

                  ttttCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTga                                                                       <  1:5628757/93‑1 (MQ=255)

                   tttCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTgag                                                                      >  2:846281/1‑93 (MQ=255)

                   tttCAGGACTACCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTgag                                                                      <  2:1480843/93‑1 (MQ=255)

                    ttCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTgaga                                                                     <  1:3064963/93‑1 (MQ=255)

                      cAGGACTATCAGGACGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGc                                                                   >  1:353208/1‑93 (MQ=255)

                       aGGACTATCAGCCCGTTAAAAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCt                                                                  <  2:4439552/93‑1 (MQ=255)

                        ggATTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTg                                                                 <  2:3595485/93‑1 (MQ=255)

                         gACTAACAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTgg                                                                <  2:2745822/93‑1 (MQ=255)

                           cTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGc                                                              <  1:6262997/93‑1 (MQ=255)

                            tATCAGGCCTTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGcc                                                             <  2:5709799/93‑1 (MQ=255)

                            tATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGcc                                                             >  2:1996318/1‑93 (MQ=255)

                              tCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGa                                                           >  2:1471374/1‑93 (MQ=255)

                              tCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGa                                                           >  1:1720380/1‑93 (MQ=255)

                              tCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGa                                                           >  1:5268010/1‑93 (MQ=255)

                              acAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGa                                                           <  2:4087231/92‑1 (MQ=255)

                                aGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAAc                                                         >  1:887486/1‑93 (MQ=255)

                                aGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAAc                                                         <  2:3298599/93‑1 (MQ=255)

                                aGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAAc                                                         >  2:4576743/1‑93 (MQ=255)

                                aGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAAc                                                         >  2:1281970/1‑93 (MQ=255)

                                aGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAAc                                                         >  2:951237/1‑93 (MQ=255)

                                aGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAAc                                                         >  1:1620499/1‑93 (MQ=255)

                                   ccGTAAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGc                                                      <  2:4418963/93‑1 (MQ=255)

                                      ttAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGa                                                   <  2:5223170/93‑1 (MQ=255)

                                      ttAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGa                                                   >  1:5767259/1‑93 (MQ=255)

                                      ttAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGa                                                   >  1:3865596/1‑93 (MQ=255)

                                      ttAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGa                                                   >  1:146051/1‑93 (MQ=255)

                                       tAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGaa                                                  <  2:1341399/93‑1 (MQ=255)

                                         aCAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACg                                                >  2:3888113/1‑93 (MQ=255)

                                           aaGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTc                                              <  1:6062862/93‑1 (MQ=255)

                                           aaGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTc                                              >  2:3146192/1‑93 (MQ=255)

                                             gCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGa                                            >  2:4741799/1‑93 (MQ=255)

                                             gCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGa                                            <  1:5214505/93‑1 (MQ=255)

                                             gCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGa                                            >  1:5651565/1‑93 (MQ=255)

                                              ccACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAg                                           <  1:2387201/93‑1 (MQ=255)

                                              ccACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAg                                           >  1:4421602/1‑93 (MQ=255)

                                                attgtgGGTGGATTATAAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGcc                                         <  2:5570685/91‑1 (MQ=255)

                                                aCTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGcc                                         <  1:5002529/93‑1 (MQ=255)

                                                aCTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGcc                                         >  1:1970999/1‑93 (MQ=255)

                                                  tgtgGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAg                                       <  1:1852227/93‑1 (MQ=255)

                                                  tgtgGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAg                                       <  2:5661335/93‑1 (MQ=255)

                                                  tgtgGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGATTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAg                                       >  2:5137216/1‑93 (MQ=255)

                                                    tgggtggATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGt                                     <  1:1933747/93‑1 (MQ=255)

                                                       gtggATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTaaa                                  >  1:5543079/1‑93 (MQ=255)

                                                       gtggATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTaaa                                  <  2:612407/93‑1 (MQ=255)

                                                          gATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTc                               >  1:1293232/1‑93 (MQ=255)

                                                          gATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTc                               >  1:5965025/1‑93 (MQ=255)

                                                          gATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTc                               <  2:2829713/93‑1 (MQ=255)

                                                             tATCAAAACGTCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAAc                            <  1:629451/93‑1 (MQ=255)

                                                             tATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAAc                            >  1:2171379/1‑93 (MQ=255)

                                                             tATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAAc                            >  2:2950125/1‑93 (MQ=255)

                                                              aTCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACg                           >  2:739280/1‑93 (MQ=255)

                                                               tCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGa                          >  1:5847657/1‑93 (MQ=255)

                                                               tCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGa                          >  1:431055/1‑93 (MQ=255)

                                                                 aaaaCGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTTAACGAAg                        >  1:2702570/1‑93 (MQ=255)

                                                                 aaaaCGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAg                        >  1:4677255/1‑93 (MQ=255)

                                                                 aaaaCGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAg                        >  2:262382/1‑93 (MQ=255)

                                                                  aaaCGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGc                       >  2:2472095/1‑93 (MQ=255)

                                                                   aaCGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGcc                      >  2:427331/1‑93 (MQ=255)

                                                                   aaCGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGcc                      <  1:2087011/93‑1 (MQ=255)

                                                                       gcgcGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTtta                  <  1:3616736/93‑1 (MQ=255)

                                                                       gcgcGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTtta                  >  1:2496962/1‑93 (MQ=255)

                                                                       gcgcGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTtta                  >  1:4786412/1‑93 (MQ=255)

                                                                       gcgcGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTtta                  >  2:4377042/1‑93 (MQ=255)

                                                                       gcgcGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTtta                  <  1:4756287/93‑1 (MQ=255)

                                                                       gcgcGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTtta                  <  1:449240/93‑1 (MQ=255)

                                                                         gcgATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTttatt                <  2:3822116/93‑1 (MQ=255)

                                                                          cgATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTttatta               >  1:1186602/1‑93 (MQ=255)

                                                                          cgATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTttatta               >  2:107055/1‑93 (MQ=255)

                                                                           gATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTaa              >  2:2289049/1‑93 (MQ=255)

                                                                           gATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTaa              <  1:1561311/93‑1 (MQ=255)

                                                                            aTCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAAt             >  1:5459216/1‑93 (MQ=255)

                                                                            aTCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAAt             <  1:5620731/93‑1 (MQ=255)

                                                                             tCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATg            >  2:158442/1‑93 (MQ=255)

                                                                              cACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGc           >  1:4135987/1‑93 (MQ=255)

                                                                                cTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGa         >  1:284435/1‑93 (MQ=255)

                                                                                cTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGa         <  1:83403/93‑1 (MQ=255)

                                                                                 ttCATTACAACTTCAGCACGGGCGATTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGAt        >  2:4654971/1‑93 (MQ=255)

                                                                                  tCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATg       <  2:5902085/93‑1 (MQ=255)

                                                                                    aTTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGc     >  1:6241742/1‑93 (MQ=255)

                                                                                     ttACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCg    <  2:2088076/93‑1 (MQ=255)

                                                                                     ttACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCg    <  2:6266882/93‑1 (MQ=255)

                                                                                      tACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCgg   >  2:1804301/1‑93 (MQ=255)

                                                                                      tACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCgg   <  1:5331132/93‑1 (MQ=255)

CACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAGCTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCGGA  >  NC_000913/4606310‑4606489

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GTCACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAGCTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCGGAAAT  >  NC_000913/4606308‑4606492

GTCACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAAC                                                                                             >  SRR4302533.4059206/1‑94 (MQ=60)

GTCACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAAC                                                                                             >  SRR4302533.5398240/1‑94 (MQ=60)

 TCCCCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACT                                                                                            <  SRR4302533.235483/94‑1 (MQ=60)

 TCACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACT                                                                                            >  SRR4302533.2900438/1‑94 (MQ=60)

  CACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTT                                                                                           <  SRR4302533.1505104/94‑1 (MQ=60)

   ACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTC                                                                                          >  SRR4302533.4079661/1‑94 (MQ=60)

    CCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCA                                                                                         >  SRR4302533.4231029/1‑94 (MQ=60)

     CTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAG                                                                                        >  SRR4302533.3700665/1‑94 (MQ=60)

     CTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAG                                                                                        <  SRR4302533.69930/94‑1 (MQ=60)

     CTTGACCGCTGAAGATTTTCAGGACTATCAGGCCTTAAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAG                                                                                        <  SRR4302533.1508416/94‑1 (MQ=60)

      TTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTACCAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGC                                                                                       <  SRR4302533.1064981/94‑1 (MQ=60)

      TTCACCGCTAAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGC                                                                                       <  SRR4302533.6318011/94‑1 (MQ=60)

       TTACCGCTAAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCA                                                                                      <  SRR4302533.781311/94‑1 (MQ=60)

         ACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACG                                                                                    >  SRR4302533.2015580/1‑94 (MQ=60)

          CCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGG                                                                                   <  SRR4302533.1838710/94‑1 (MQ=60)

           CGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGG                                                                                  <  SRR4302533.5328180/94‑1 (MQ=60)

           CGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGG                                                                                  >  SRR4302533.5258727/1‑94 (MQ=60)

            GCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGC                                                                                 >  SRR4302533.2385658/1‑94 (MQ=60)

             CTGAAGATTTTCAGGACTATCAGGACGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCG                                                                                >  SRR4302533.3804672/1‑94 (MQ=60)

              TGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGG                                                                               >  SRR4302533.3291497/1‑94 (MQ=60)

              TGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGG                                                                               >  SRR4302533.5657520/1‑94 (MQ=60)

              TGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGG                                                                               <  SRR4302533.5777042/94‑1 (MQ=60)

               GAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGT                                                                              <  SRR4302533.261586/94‑1 (MQ=60)

                  GATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAACACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTG                                                                           >  SRR4302533.2631036/1‑94 (MQ=60)

                   ATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGA                                                                          >  SRR4302533.4920717/1‑94 (MQ=60)

                    TTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAG                                                                         <  SRR4302533.5662793/94‑1 (MQ=60)

                      TTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAG                                                                       <  SRR4302533.3083788/94‑1 (MQ=60)

                       TCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGC                                                                      <  SRR4302533.5892599/94‑1 (MQ=60)

                       TCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGC                                                                      >  SRR4302533.5425264/1‑94 (MQ=60)

                       TCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGC                                                                      <  SRR4302533.2109744/94‑1 (MQ=60)

                       TCAGGACTATCAGGACGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGC                                                                      >  SRR4302533.355363/1‑94 (MQ=60)

                        CAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCT                                                                     >  SRR4302533.631781/1‑94 (MQ=60)

                        CAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCT                                                                     <  SRR4302533.3336283/94‑1 (MQ=60)

                         AGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTG                                                                    >  SRR4302533.4519455/1‑94 (MQ=60)

                          GGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGG                                                                   >  SRR4302533.2401718/1‑94 (MQ=60)

                          GGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGG                                                                   >  SRR4302533.1244404/1‑94 (MQ=60)

                          GGACTATAAGGCCTTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGG                                                                   <  SRR4302533.49424/94‑1 (MQ=60)

                           GAGTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGG                                                                  <  SRR4302533.2662124/94‑1 (MQ=60)

                           GACTATCAGGCCGTTAACAAGCCACTGTGGGCGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCCGCACGCGCGGTTTGAGAGCTGGG                                                                  >  SRR4302533.888280/1‑94 (MQ=60)

                           GACTATCAGGCCGTAAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGG                                                                  <  SRR4302533.3541011/94‑1 (MQ=60)

                            ACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGC                                                                 <  SRR4302533.388116/94‑1 (MQ=60)

                            ACTAACAGTCCGTTACAAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGC                                                                 <  SRR4302533.5524855/94‑1 (MQ=60)

                             CTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCC                                                                <  SRR4302533.6300433/94‑1 (MQ=60)

                             CTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCC                                                                >  SRR4302533.2811480/1‑94 (MQ=60)

                             CTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCC                                                                >  SRR4302533.666212/1‑94 (MQ=60)

                              TATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCG                                                               >  SRR4302533.5184634/1‑94 (MQ=60)

                               ATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGA                                                              >  SRR4302533.5299613/1‑94 (MQ=60)

                               ATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGA                                                              >  SRR4302533.1730813/1‑94 (MQ=60)

                                 CAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAAC                                                            >  SRR4302533.2604416/1‑94 (MQ=60)

                                 CAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAAC                                                            >  SRR4302533.892695/1‑94 (MQ=60)

                                 CAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAAC                                                            >  SRR4302533.1630317/1‑94 (MQ=60)

                                 CAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTCGGCCGAAC                                                            >  SRR4302533.5685438/1‑94 (MQ=60)

                                    GCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGC                                                         <  SRR4302533.5669751/94‑1 (MQ=60)

                                     CCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCT                                                        <  SRR4302533.2485875/94‑1 (MQ=60)

                                     CCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCT                                                        >  SRR4302533.5396777/1‑94 (MQ=60)

                                      CGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTG                                                       <  SRR4302533.56585/94‑1 (MQ=60)

                                       GTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGA                                                      >  SRR4302533.3889195/1‑94 (MQ=60)

                                       GTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGA                                                      >  SRR4302533.146983/1‑94 (MQ=60)

                                       GTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGA                                                      >  SRR4302533.5802076/1‑94 (MQ=60)

                                         TAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAAC                                                    <  SRR4302533.5348023/94‑1 (MQ=60)

                                         TAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAAC                                                    <  SRR4302533.401085/94‑1 (MQ=60)

                                           ACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGT                                                  >  SRR4302533.1671613/1‑94 (MQ=60)

                                             AAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCG                                                >  SRR4302533.2516380/1‑94 (MQ=60)

                                             AAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCG                                                >  SRR4302533.4416533/1‑94 (MQ=60)

                                             AAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCG                                                <  SRR4302533.6099564/94‑1 (MQ=60)

                                             AAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCG                                                >  SRR4302533.881572/1‑94 (MQ=60)

                                              AGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGA                                               >  SRR4302533.5685723/1‑94 (MQ=60)

                                               GCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAG                                              <  SRR4302533.5245905/94‑1 (MQ=60)

                                               GCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAG                                              >  SRR4302533.4448335/1‑94 (MQ=60)

                                               GCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAG                                              <  SRR4302533.1421138/94‑1 (MQ=60)

                                                CCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGC                                             >  SRR4302533.3877722/1‑94 (MQ=60)

                                                CCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGC                                             <  SRR4302533.2401950/94‑1 (MQ=60)

                                                 CACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCC                                            >  SRR4302533.1983059/1‑94 (MQ=60)

                                                  ACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACTGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCA                                           <  SRR4302533.4351702/94‑1 (MQ=60)

                                                  ACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCA                                           <  SRR4302533.5032851/94‑1 (MQ=60)

                                                   CTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAG                                          <  SRR4302533.5567265/94‑1 (MQ=60)

                                                   CTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAG                                          >  SRR4302533.1786771/1‑94 (MQ=60)

                                                   CTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAG                                          >  SRR4302533.2300608/1‑94 (MQ=60)

                                                    TGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGG                                         <  SRR4302533.1863522/94‑1 (MQ=60)

                                                      TGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTA                                       >  SRR4302533.56533/1‑94 (MQ=60)

                                                      TGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTA                                       <  SRR4302533.1945546/94‑1 (MQ=60)

                                                        GGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAA                                     >  SRR4302533.5576556/1‑94 (MQ=60)

                                                         GTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAAC                                    >  SRR4302533.6247311/1‑94 (MQ=60)

                                                          TGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACT                                   <  SRR4302533.6297051/94‑1 (MQ=60)

                                                           GGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTC                                  >  SRR4302533.2975389/1‑94 (MQ=60)

                                                           GGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTC                                  >  SRR4302533.1301022/1‑94 (MQ=60)

                                                           GGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTC                                  >  SRR4302533.6001122/1‑94 (MQ=60)

                                                             ATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAA                                >  SRR4302533.510202/1‑94 (MQ=60)

                                                              TTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAAC                               >  SRR4302533.2184733/1‑94 (MQ=60)

                                                               TATCAAAACGTCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACG                              <  SRR4302533.633152/94‑1 (MQ=60)

                                                                ATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGA                             >  SRR4302533.433625/1‑94 (MQ=60)

                                                                ATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGA                             >  SRR4302533.5883006/1‑94 (MQ=60)

                                                                ATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCCGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGA                             <  SRR4302533.2481276/94‑1 (MQ=60)

                                                                 TCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAA                            <  SRR4302533.113934/94‑1 (MQ=60)

                                                                  CAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTTAACGAAG                           >  SRR4302533.2719147/1‑94 (MQ=60)

                                                                  CAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAG                           >  SRR4302533.1871107/1‑94 (MQ=60)

                                                                  CAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAG                           >  SRR4302533.4705601/1‑94 (MQ=60)

                                                                   AAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGC                          >  SRR4302533.146496/1‑94 (MQ=60)

                                                                   AAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGC                          >  SRR4302533.597647/1‑94 (MQ=60)

                                                                    AAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCC                         <  SRR4302533.4149963/94‑1 (MQ=60)

                                                                    AAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCC                         <  SRR4302533.4576194/94‑1 (MQ=60)

                                                                     AACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCT                        >  SRR4302533.3242025/1‑94 (MQ=60)

                                                                     AACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCT                        <  SRR4302533.2099863/94‑1 (MQ=60)

                                                                       CGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTT                      <  SRR4302533.4507514/94‑1 (MQ=60)

                                                                        GGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTA                     >  SRR4302533.4815399/1‑94 (MQ=60)

                                                                        GGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTA                     >  SRR4302533.2512364/1‑94 (MQ=60)

                                                                        GGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTA                     >  SRR4302533.2246616/1‑94 (MQ=60)

                                                                         GCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTAT                    <  SRR4302533.451926/94‑1 (MQ=60)

                                                                         GCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTAT                    <  SRR4302533.4721910/94‑1 (MQ=60)

                                                                         GCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTAT                    <  SRR4302533.4785150/94‑1 (MQ=60)

                                                                         GCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTAT                    <  SRR4302533.3638986/94‑1 (MQ=60)

                                                                          CGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATT                   >  SRR4302533.4098278/1‑94 (MQ=60)

                                                                           GCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTA                  <  SRR4302533.2126755/94‑1 (MQ=60)

                                                                           GCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTA                  >  SRR4302533.1193723/1‑94 (MQ=60)

                                                                            CGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAA                 >  SRR4302533.1706005/1‑94 (MQ=60)

                                                                            CGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAA                 <  SRR4302533.5867643/94‑1 (MQ=60)

                                                                             GATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAAT                <  SRR4302533.1570713/94‑1 (MQ=60)

                                                                             GATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAAT                >  SRR4302533.5492106/1‑94 (MQ=60)

                                                                              ATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATG               <  SRR4302533.5654705/94‑1 (MQ=60)

                                                                               TCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGC              >  SRR4302533.642215/1‑94 (MQ=60)

                                                                               TCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGC              >  SRR4302533.4161089/1‑94 (MQ=60)

                                                                                CACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCG             <  SRR4302533.198411/94‑1 (MQ=60)

                                                                                CACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCG             >  SRR4302533.4563490/1‑94 (MQ=60)

                                                                                 ACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGA            >  SRR4302533.286174/1‑94 (MQ=60)

                                                                                  CTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGAT           <  SRR4302533.83934/94‑1 (MQ=60)

                                                                                  CTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGAT           >  SRR4302533.358611/1‑94 (MQ=60)

                                                                                   TTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATG          <  SRR4302533.4809458/94‑1 (MQ=60)

                                                                                   TTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATG          <  SRR4302533.6082091/94‑1 (MQ=60)

                                                                                   TTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATG          <  SRR4302533.1957852/94‑1 (MQ=60)

                                                                                    TCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGG         <  SRR4302533.3218599/94‑1 (MQ=60)

                                                                                     TATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGC        <  SRR4302533.5748282/94‑1 (MQ=60)

                                                                                     CATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGC        >  SRR4302533.6279111/1‑94 (MQ=60)

                                                                                      ATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCG       >  SRR4302533.162221/1‑94 (MQ=60)

                                                                                      ATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCG       >  SRR4302533.1285561/1‑94 (MQ=60)

                                                                                      ATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCG       <  SRR4302533.1885894/94‑1 (MQ=60)

                                                                                      ATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCG       >  SRR4302533.4017473/1‑94 (MQ=60)

                                                                                       TTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCGG      >  SRR4302533.6091558/1‑94 (MQ=60)

                                                                                       TTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCGG      <  SRR4302533.722860/94‑1 (MQ=60)

                                                                                        TACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCGGA     >  SRR4302533.6108910/1‑94 (MQ=60)

                                                                                        TACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCGGA     >  SRR4302533.4788610/1‑94 (MQ=60)

                                                                                        TACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCGGA     <  SRR4302533.5363087/94‑1 (MQ=60)

                                                                                        TACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCGGA     <  SRR4302533.3699261/94‑1 (MQ=60)

                                                                                         ACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCGGAA    >  SRR4302533.5444105/1‑94 (MQ=60)

                                                                                           AACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCGGAAAT  >  SRR4302533.4749409/1‑94 (MQ=60)

                                                                                           AACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCGGAAAT  >  SRR4302533.2939960/1‑94 (MQ=60)

                                                                                           AACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCGGAAAT  <  SRR4302533.3413838/94‑1 (MQ=60)

                                                                                           AACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCGGAAAT  <  SRR4302533.4963861/94‑1 (MQ=60)

GTCACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAGCTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCGGAAAT  >  NC_000913/4606308‑4606492

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`