Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 647 270.1 21258240 98.4% 20918108 94.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,467,322 A→G C57R (TGC→CGC)  yheB ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,467,3220AG99.8% 1444.1 / ‑5.0 413C57R (TGC→CGC) yheBhypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/1);  new base G (92/320);  total (92/321)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.66e-01

Only 100 of 419 total aligned reads displayed.

GTATTGCCAAACTGACTAATTTCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCAATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGATATTTATTACCACCTTGTTGGTTATTCCATGC  >  NC_000913/3467231‑3467412
                                                                                           |                                                                                          
gtATTGCCAAACTGACTAATTTCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGAt                                                                                          >  2:8450322/1‑94 (MQ=255)
gtATTGCCAAACTGACTAATTTCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGAt                                                                                          >  1:6180292/1‑94 (MQ=255)
  aTTGCCAAACTGACTAATTTCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGAttt                                                                                        <  1:6679425/94‑1 (MQ=255)
   ttGCCAAACTGACTAATTTCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTg                                                                                       <  1:9495510/94‑1 (MQ=255)
   ttGCCAAACTGACTAATTTCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTg                                                                                       <  2:5021092/94‑1 (MQ=255)
    tGCCAAACTGACTAATTTCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGt                                                                                      <  2:5900532/94‑1 (MQ=255)
    tGCCAAACTGACTAATTTCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGt                                                                                      >  2:579875/1‑94 (MQ=255)
    tGCCAAACTGACTAATTTCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGt                                                                                      >  2:9448705/1‑94 (MQ=255)
     tgcAAACTGACTAATTTCAGCAGCTGTTGCAGTAAGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTa                                                                                     <  1:8088115/92‑1 (MQ=255)
     gCCAAACTGACTAATTTCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTa                                                                                     <  1:1510996/94‑1 (MQ=255)
      ccAAACTGACTAATTTCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTag                                                                                    >  1:4752770/1‑94 (MQ=255)
        aaaCTGACTAATTTCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTagaa                                                                                  >  1:3833053/1‑94 (MQ=255)
        aaaCTGACTAATTTCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTagaa                                                                                  <  1:5056221/94‑1 (MQ=255)
         aaCTGACTAATTTCAGCAGCTGGTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGCagaaa                                                                                 >  1:8616787/1‑93 (MQ=255)
           cTGACTAATTTCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAgaagaa                                                                               >  2:6828060/1‑94 (MQ=255)
           cTGACTAATTTCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAgaagaa                                                                               <  2:7308485/94‑1 (MQ=255)
           cTGACTAATTTCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAgaagaa                                                                               <  2:10377271/94‑1 (MQ=255)
             gACTAATTTCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAAc                                                                             <  1:437272/94‑1 (MQ=255)
              aCTAATTTCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGTGCGCTTTGTAGAAGCAAcc                                                                            >  1:5660049/1‑94 (MQ=255)
              aCTAATTTCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAAcc                                                                            <  1:6370444/94‑1 (MQ=255)
              aCTAATTTCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAAcc                                                                            >  1:5749665/1‑94 (MQ=255)
              aCTAATTTCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAAcc                                                                            <  2:5242354/94‑1 (MQ=255)
               cTAATTTCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAAccc                                                                           >  2:7527930/1‑94 (MQ=255)
                tAATTTCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACcca                                                                          <  2:4185592/94‑1 (MQ=255)
                 aaTTTCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACccac                                                                         >  2:4665974/1‑94 (MQ=255)
                  aTTTCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACccacc                                                                        <  1:3227463/94‑1 (MQ=255)
                  aTTTCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACccacc                                                                        <  2:2576902/94‑1 (MQ=255)
                   tttCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACccacca                                                                       <  1:9633907/94‑1 (MQ=255)
                   tttCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACccacca                                                                       <  2:5406741/94‑1 (MQ=255)
                    ttCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAg                                                                      <  1:9821586/94‑1 (MQ=255)
                    ttCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAg                                                                      >  2:3347950/1‑94 (MQ=255)
                     tCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAgg                                                                     <  2:7727550/94‑1 (MQ=255)
                      cagcagCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGc                                                                    >  1:10043938/1‑94 (MQ=255)
                      cagcagCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGc                                                                    <  2:4067155/94‑1 (MQ=255)
                        gcagcTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCAt                                                                  <  2:10507640/94‑1 (MQ=255)
                        gcagcTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCAGTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCAt                                                                  <  2:1900605/94‑1 (MQ=255)
                         cagcTGTTGCGGTACGCTTTAAACGCCCCGGGTTAGTGGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCAtt                                                                 <  2:3007320/94‑1 (MQ=255)
                         cagcTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCAtt                                                                 <  2:4370895/94‑1 (MQ=255)
                          agcTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCAttt                                                                >  2:4449078/1‑94 (MQ=255)
                          agcTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCAttt                                                                >  1:2908690/1‑94 (MQ=255)
                          agcTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCAttt                                                                <  2:6205492/94‑1 (MQ=255)
                           gcTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCAtttt                                                               >  2:8836091/1‑94 (MQ=255)
                            cTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTc                                                              <  2:9770358/94‑1 (MQ=255)
                             tGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCa                                                             <  2:4761500/94‑1 (MQ=255)
                             tGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCa                                                             <  1:1187287/94‑1 (MQ=255)
                             tGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCa                                                             <  1:626708/94‑1 (MQ=255)
                              gTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCAt                                                            >  1:6987954/1‑94 (MQ=255)
                              gTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCAt                                                            <  2:7918026/94‑1 (MQ=255)
                              gTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCAt                                                            >  1:9131533/1‑94 (MQ=255)
                               ttGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATa                                                           <  1:3631197/94‑1 (MQ=255)
                                tGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATaa                                                          <  1:6019833/94‑1 (MQ=255)
                                  cGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAAt                                                        <  2:6388366/94‑1 (MQ=255)
                                   ggTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAAtt                                                       >  1:7387763/1‑94 (MQ=255)
                                       cGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGc                                                   <  1:2295040/94‑1 (MQ=255)
                                          tttAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCAt                                                <  1:5613039/94‑1 (MQ=255)
                                          tttAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCAt                                                <  2:4242540/94‑1 (MQ=255)
                                            tAAACGCCACGGGTTAGTTGCATCATTTGCTTTTGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCg                                              <  2:221896/94‑1 (MQ=255)
                                            tAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCg                                              >  1:998595/1‑94 (MQ=255)
                                            tAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCg                                              <  1:2037560/94‑1 (MQ=255)
                                             aaaCGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGa                                             <  2:3842616/94‑1 (MQ=255)
                                             aaaCGCCACGGGTTAGTTGCATCATGTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGa                                             <  1:4504428/94‑1 (MQ=255)
                                              aaCGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGaa                                            >  2:3131641/1‑94 (MQ=255)
                                                cGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGaaaa                                          >  1:7191806/1‑94 (MQ=255)
                                                cGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGaaaa                                          >  2:6759895/1‑94 (MQ=255)
                                                 gCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAAt                                         <  1:3094200/94‑1 (MQ=255)
                                                  ccACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATa                                        <  2:799311/94‑1 (MQ=255)
                                                       ggTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTg                                   <  1:10582918/94‑1 (MQ=255)
                                                        gTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGa                                  <  1:7930010/94‑1 (MQ=255)
                                                        gTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGa                                  <  2:5263143/94‑1 (MQ=255)
                                                        gTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGa                                  <  2:906532/94‑1 (MQ=255)
                                                        gTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGa                                  <  2:9857457/94‑1 (MQ=255)
                                                         ttAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGat                                 <  2:8644724/94‑1 (MQ=255)
                                                          tAGTTGCATCATTTGCTTTCTCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGata                                <  2:1148742/94‑1 (MQ=255)
                                                           aGTTGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGatat                               <  1:8844073/94‑1 (MQ=255)
                                                             ttGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGAtattt                             <  2:1594771/94‑1 (MQ=255)
                                                             ttGCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGAtattt                             <  1:1870166/94‑1 (MQ=255)
                                                              tggctcatTGTCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGAtattta                            <  2:7135087/90‑1 (MQ=255)
                                                               gCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGAtatttat                           <  2:2404721/94‑1 (MQ=255)
                                                               gCATCATTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGAtatttat                           <  1:6851690/94‑1 (MQ=255)
                                                                    atTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGATATTTATTacca                      <  2:1434807/94‑1 (MQ=255)
                                                                    atTTGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGATATTTATTacca                      <  1:4495647/94‑1 (MQ=255)
                                                                     tttGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAACCCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGATATTTATTaccac                     <  1:1651338/94‑1 (MQ=255)
                                                                       tGCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGATATTTATTACCACCt                   <  2:9463359/94‑1 (MQ=255)
                                                                        gCTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGATATTTATTACCACCtt                  <  2:1960749/94‑1 (MQ=255)
                                                                         cTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGATATTTATTACCACCttg                 <  1:103324/94‑1 (MQ=255)
                                                                         cTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGATATTTATTACCACCttg                 >  2:8274859/1‑94 (MQ=255)
                                                                         cTTTCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGATATTTATTACCACCttg                 <  1:5458589/94‑1 (MQ=255)
                                                                           ttCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGATATTTATTACCACCttgtt               <  1:4205017/94‑1 (MQ=255)
                                                                           ttCGCTTTTCCCGAGCGATTTGTAGAAGAAACCCAACAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGATATTTATTACCACCttgtt               >  1:9206614/1‑94 (MQ=255)
                                                                            tCGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGATATTTATTACCACCttgttg              >  1:2469424/1‑94 (MQ=255)
                                                                             cGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGATATTTATTACCACCTTGTTgg             <  2:2701118/94‑1 (MQ=255)
                                                                             cGCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGATATTTATTACCACCTTGTTgg             <  2:819703/94‑1 (MQ=255)
                                                                              gCTTTTCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGATATTTATTACCACCTTGTTGGt            <  2:6482272/94‑1 (MQ=255)
                                                                                  ttCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGATATTTATTACCACCTTGTTGGTTAtt        <  1:1437589/94‑1 (MQ=255)
                                                                                   tCCCGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGATATTTATTCCCACCTTGTTGGTTATTc       <  2:7004726/94‑1 (MQ=255)
                                                                                      cGGGCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGATATTTATTACCACCTTGTTGGTTATTCCAt    <  1:8339234/94‑1 (MQ=255)
                                                                                       gggCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGATATTTATTACCACCTTGTTGGTTATTCCATg   <  2:3248647/94‑1 (MQ=255)
                                                                                       gggCGATTTGTAGAAGAAACCCACCAGGCATTTACATAAATTTTGCCATCGAAAATAACCTGATATTTATTACCACCTTGTTGGTTATTCCATg   <  2:10185831/94‑1 (MQ=255)
                                                                                        ggCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGATATTTATTACCACCTTGTTGGTTATTCCATGc  <  1:7541184/94‑1 (MQ=255)
                                                                                        ggCGATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGATATTTATTACCACCTTGTTGGTTATTCCATGc  <  2:5995645/94‑1 (MQ=255)
                                                                                           |                                                                                          
GTATTGCCAAACTGACTAATTTCAGCAGCTGTTGCGGTACGCTTTAAACGCCACGGGTTAGTTGCATCATTTGCTTTCGCTTTTCCCGGGCAATTTGTAGAAGAAACCCACCAGGCATTTTCATAAATTTTGCCATCGAAAATAACCTGATATTTATTACCACCTTGTTGGTTATTCCATGC  >  NC_000913/3467231‑3467412

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 311 total aligned reads displayed.
AATTTTTCTTTAGACACGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTACCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCACGACCTTTGGTCAGA  >  NC_000913/3468950‑3469136
                                                                                             |                                                                                             
atcttttcttaagactcggttattttctttcctatagtccccccccttcaAGGAGAGACCACGGGACTTTGGTATTAACCCTTAGGCTTATTTG                                                                                               <  SRR4302545.43317/44‑1 (MQ=60)
AATTTTTCTTTAGACACGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTG                                                                                               >  SRR4302545.7425878/1‑94 (MQ=60)
 ATTTTTCTTTAGACACGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGC                                                                                              >  SRR4302545.5459414/1‑94 (MQ=60)
   ttttcttgaaacccgtttattttccttcttttagtgtcccccccttgaggggaggcCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCA                                                                                            <  SRR4302545.8094417/38‑1 (MQ=60)
   TTTTCTTTAGACACGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCA                                                                                            <  SRR4302545.5644548/94‑1 (MQ=60)
   TTTTCTTTAGACACGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCA                                                                                            <  SRR4302545.1243393/94‑1 (MQ=60)
    tttctgttgccctgctatatttcgttcgaatggtgctccccctggagggagaaacccgGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCAC                                                                                           <  SRR4302545.7870985/36‑1 (MQ=60)
    TTTCTTTAGACACGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCAC                                                                                           <  SRR4302545.1653025/94‑1 (MQ=60)
    TTTCTTTAGACACGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCAC                                                                                           >  SRR4302545.1031996/1‑94 (MQ=60)
    TTTCTTTAGACACGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCAC                                                                                           <  SRR4302545.7186123/94‑1 (MQ=60)
    TTTCTTTAGACACGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCAC                                                                                           <  SRR4302545.6462112/94‑1 (MQ=60)
    TTTCTTTAGACACGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACGTTGGGATTAACACTTAGGCTTATTTGCCAC                                                                                           >  SRR4302545.9754178/1‑94 (MQ=60)
      TCTTTAGACACGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGG                                                                                         >  SRR4302545.2793038/1‑94 (MQ=60)
      TCTTTAGACACGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGG                                                                                         >  SRR4302545.7338715/1‑94 (MQ=60)
       tttaagacgcgtttattTTCCTTACTATAGTCCTCTCCCCTGCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGG                                                                                        <  SRR4302545.4210621/77‑1 (MQ=60)
       CTTTAGACACGGCTATATTCCTTTCTATAGTGCTCTCCCCTTCAGGAGAGAGCATGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGG                                                                                        <  SRR4302545.9370495/94‑1 (MQ=60)
       CTTTAGACACGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGG                                                                                        >  SRR4302545.10544543/1‑94 (MQ=60)
       CTTTAGACACGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGG                                                                                        <  SRR4302545.7087293/94‑1 (MQ=60)
         TTAGACACGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCT                                                                                      <  SRR4302545.10545451/94‑1 (MQ=60)
         TTAGACACGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCT                                                                                      >  SRR4302545.3782725/1‑94 (MQ=60)
           AGACACGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTC                                                                                    >  SRR4302545.4851798/1‑94 (MQ=60)
            GACACGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCA                                                                                   >  SRR4302545.1987794/1‑94 (MQ=60)
            GACACGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCA                                                                                   >  SRR4302545.10657360/1‑94 (MQ=60)
            AACACGCCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCA                                                                                   <  SRR4302545.400539/94‑1 (MQ=60)
             ACACGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAT                                                                                  >  SRR4302545.466906/1‑94 (MQ=60)
             ACACGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAA                                                                                  <  SRR4302545.7415791/94‑1 (MQ=60)
             ACACGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAA                                                                                  <  SRR4302545.7415790/94‑1 (MQ=60)
             ACACGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAA                                                                                  >  SRR4302545.6941554/1‑94 (MQ=60)
              CACGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAAT                                                                                 >  SRR4302545.7918877/1‑94 (MQ=60)
              CACGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAAT                                                                                 >  SRR4302545.8048356/1‑94 (MQ=60)
               ACGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATT                                                                                <  SRR4302545.9274545/94‑1 (MQ=60)
                CGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCATGGGCTTCAATTA                                                                               >  SRR4302545.8858056/1‑94 (MQ=60)
                CGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTA                                                                               >  SRR4302545.9709327/1‑94 (MQ=60)
                CGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAAGTA                                                                               >  SRR4302545.2155729/1‑94 (MQ=60)
                 GGCTTTTTTCTTTACTATAGTGCTCCCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTAC                                                                              <  SRR4302545.2210667/94‑1 (MQ=60)
                 GGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGATCACGGGACTTTGGTATTAACCCGTAGGCTTATTTGCGACGGGGTTTAATTAC                                                                              >  SRR4302545.5405078/1‑94 (MQ=60)
                 GGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGGCTTTGGTATTAACCCTTAGGCTTATTTGTCACGTGCTTCAATTAC                                                                              >  SRR4302545.135860/1‑94 (MQ=60)
                 GGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTAC                                                                              <  SRR4302545.3315983/94‑1 (MQ=60)
                 GGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTAC                                                                              >  SRR4302545.7902334/1‑94 (MQ=60)
                  GTTATATTCCTTATTATAGTCCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACG                                                                             <  SRR4302545.8170692/94‑1 (MQ=60)
                  GCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACG                                                                             >  SRR4302545.1563331/1‑94 (MQ=60)
                   tttttttctttactttgttcccccccccgagaggagggacaACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGG                                                                            <  SRR4302545.2067542/53‑1 (MQ=60)
                   CTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGG                                                                            >  SRR4302545.1650652/1‑94 (MQ=60)
                    TATATTCTTTACTATAGTGCTCTCCCTTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGC                                                                           <  SRR4302545.223041/94‑1 (MQ=60)
                    TATATTCCTTACTATAGCGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGC                                                                           >  SRR4302545.963825/1‑94 (MQ=60)
                       tttctTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCCCGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTG                                                                        <  SRR4302545.8192649/89‑1 (MQ=60)
                       ATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGGCTG                                                                        >  SRR4302545.5442338/1‑94 (MQ=60)
                       ATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTG                                                                        >  SRR4302545.10923859/1‑94 (MQ=60)
                       ATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTG                                                                        >  SRR4302545.3646254/1‑94 (MQ=60)
                       ATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAAACCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTG                                                                        >  SRR4302545.2155592/1‑94 (MQ=60)
                        ttctttactagtgtccccccccctcagGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGA                                                                       <  SRR4302545.7850235/67‑1 (MQ=60)
                         tccctactgttgtccctccccttaggggagagaaccCGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAG                                                                      <  SRR4302545.2021196/58‑1 (MQ=60)
                         TCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAG                                                                      >  SRR4302545.9083471/1‑94 (MQ=60)
                          CCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGC                                                                     <  SRR4302545.10820331/94‑1 (MQ=60)
                          CCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGC                                                                     >  SRR4302545.2610649/1‑94 (MQ=60)
                           CTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCA                                                                    >  SRR4302545.3621900/1‑94 (MQ=60)
                            TTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCCA                                                                   >  SRR4302545.8428836/1‑94 (MQ=60)
                             TCCTATAGCGCCCTCCCGTTCGGGAGAGACCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAAC                                                                  <  SRR4302545.745312/94‑1 (MQ=60)
                             TACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAAC                                                                  <  SRR4302545.8767758/94‑1 (MQ=60)
                             TACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAAC                                                                  >  SRR4302545.5008718/1‑94 (MQ=60)
                               CTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGT                                                                >  SRR4302545.2226465/1‑94 (MQ=60)
                               CTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGT                                                                >  SRR4302545.9169255/1‑94 (MQ=60)
                               CTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGT                                                                >  SRR4302545.1853171/1‑94 (MQ=60)
                               CTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGT                                                                >  SRR4302545.1432184/1‑94 (MQ=60)
                                TATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTT                                                               >  SRR4302545.4826881/1‑94 (MQ=60)
                                TATAGTGCTCTCCCCTTAAGGAAAGAGCAAGGGACTTTGGTATTAACACTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTT                                                               <  SRR4302545.3584626/94‑1 (MQ=60)
                                 ATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTA                                                              >  SRR4302545.875340/1‑94 (MQ=60)
                                 ATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTA                                                              >  SRR4302545.2701838/1‑94 (MQ=60)
                                 ATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTA                                                              >  SRR4302545.9411392/1‑94 (MQ=60)
                                  tggtcctcccccctcaAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTAC                                                             <  SRR4302545.4364339/78‑1 (MQ=60)
                                  tgggcctcccccctaggggagacgacgaGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTAC                                                             <  SRR4302545.5903072/66‑1 (MQ=60)
                                  TAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTAC                                                             <  SRR4302545.8588955/94‑1 (MQ=60)
                                   AGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACT                                                            <  SRR4302545.3451545/94‑1 (MQ=60)
                                   AGCGCTCTCCCCTCCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACT                                                            <  SRR4302545.257985/94‑1 (MQ=60)
                                    GTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTC                                                           >  SRR4302545.8079077/1‑94 (MQ=60)
                                     TGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCG                                                          >  SRR4302545.5339645/1‑94 (MQ=60)
                                     TGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCG                                                          <  SRR4302545.10763481/94‑1 (MQ=60)
                                     TGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCG                                                          <  SRR4302545.2641397/94‑1 (MQ=60)
                                      GCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGG                                                         >  SRR4302545.5163036/1‑94 (MQ=60)
                                       CTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGC                                                        <  SRR4302545.7205296/94‑1 (MQ=60)
                                       CTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGC                                                        >  SRR4302545.1899206/1‑94 (MQ=60)
                                       CTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGC                                                        >  SRR4302545.6702376/1‑94 (MQ=60)
                                        TCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCG                                                       >  SRR4302545.1474126/1‑94 (MQ=60)
                                        TCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCG                                                       >  SRR4302545.6133964/1‑94 (MQ=60)
                                         CTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGC                                                      >  SRR4302545.7537273/1‑94 (MQ=60)
                                         CTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGC                                                      >  SRR4302545.5558855/1‑94 (MQ=60)
                                          TCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCT                                                     >  SRR4302545.8377007/1‑94 (MQ=60)
                                           CCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTT                                                    <  SRR4302545.5303363/94‑1 (MQ=60)
                                             CCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCA                                                  <  SRR4302545.3408638/94‑1 (MQ=60)
                                             CCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCA                                                  >  SRR4302545.1396113/1‑94 (MQ=60)
                                             CCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCA                                                  >  SRR4302545.8609255/1‑94 (MQ=60)
                                              CTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCAT                                                 <  SRR4302545.6609210/94‑1 (MQ=60)
                                              CTGCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCAT                                                 <  SRR4302545.8596465/94‑1 (MQ=60)
                                               TTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATC                                                <  SRR4302545.8866160/94‑1 (MQ=60)
                                               TTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATC                                                >  SRR4302545.5942725/1‑94 (MQ=60)
                                                agggggaggaaccaGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCA                                               <  SRR4302545.51198/80‑1 (MQ=60)
                                                TCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCA                                               <  SRR4302545.1346033/94‑1 (MQ=60)
                                                 cagaggaaagctCGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCAT                                              <  SRR4302545.10100603/82‑1 (MQ=60)
                                                 CAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCAT                                              <  SRR4302545.8920867/94‑1 (MQ=60)
                                                  AGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCGACGTTACTCGGCGCTTCATCATA                                             >  SRR4302545.9240071/1‑94 (MQ=60)
                                                  AGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATC                                             >  SRR4302545.2316705/1‑94 (MQ=60)
                                                  AGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATA                                             >  SRR4302545.9821016/1‑94 (MQ=60)
                                                  AGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATA                                             >  SRR4302545.3276082/1‑94 (MQ=60)
                                                  AGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATA                                             >  SRR4302545.7013502/1‑94 (MQ=60)
                                                  AGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATA                                             >  SRR4302545.1242223/1‑94 (MQ=60)
                                                   GGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATAC                                            >  SRR4302545.7040042/1‑94 (MQ=60)
                                                   GGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATAC                                            >  SRR4302545.5863913/1‑94 (MQ=60)
                                                   GGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAAAGTTACTCGGCGCTTCATCATAC                                            >  SRR4302545.4570172/1‑94 (MQ=60)
                                                    GAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACT                                           <  SRR4302545.9345207/94‑1 (MQ=60)
                                                     AGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTT                                          >  SRR4302545.9927154/1‑94 (MQ=60)
                                                     AGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTT                                          <  SRR4302545.3095788/94‑1 (MQ=60)
                                                     AGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTT                                          <  SRR4302545.2863855/94‑1 (MQ=60)
                                                      GAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTC                                         <  SRR4302545.7288915/94‑1 (MQ=60)
                                                      GAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTC                                         <  SRR4302545.1299637/94‑1 (MQ=60)
                                                       AGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCA                                        <  SRR4302545.604295/94‑1 (MQ=60)
                                                       AGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCA                                        <  SRR4302545.7402511/94‑1 (MQ=60)
                                                       AGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCA                                        <  SRR4302545.5806529/94‑1 (MQ=60)
                                                       AGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCA                                        <  SRR4302545.6626805/94‑1 (MQ=60)
                                                       AGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCA                                        <  SRR4302545.8058008/94‑1 (MQ=60)
                                                       AGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCA                                        >  SRR4302545.1576268/1‑94 (MQ=60)
                                                       AGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCA                                        >  SRR4302545.1576266/1‑94 (MQ=60)
                                                       AGAGCACGGGACTTTGGTATTAACCCTTAGGCTTAGTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCA                                        <  SRR4302545.8058007/94‑1 (MQ=60)
                                                        GAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAG                                       >  SRR4302545.10099242/1‑94 (MQ=60)
                                                        GAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAG                                       <  SRR4302545.3133369/94‑1 (MQ=60)
                                                         AGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGG                                      >  SRR4302545.10911102/1‑94 (MQ=60)
                                                         AGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGG                                      <  SRR4302545.110067/94‑1 (MQ=60)
                                                         AGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGG                                      <  SRR4302545.4690106/94‑1 (MQ=60)
                                                         AGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGG                                      >  SRR4302545.6024187/1‑94 (MQ=60)
                                                          GCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGA                                     <  SRR4302545.513670/94‑1 (MQ=60)
                                                          GCACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGA                                     >  SRR4302545.3198063/1‑94 (MQ=60)
                                                           CACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAA                                    <  SRR4302545.5681350/94‑1 (MQ=60)
                                                           CACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAA                                    >  SRR4302545.441401/1‑94 (MQ=60)
                                                           CACGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAA                                    <  SRR4302545.5188977/94‑1 (MQ=60)
                                                            ACGGGACTTTGGTATTAACCCTTAGGCTTGTTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAAT                                   >  SRR4302545.3985330/1‑94 (MQ=60)
                                                             CGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATT                                  <  SRR4302545.1294561/94‑1 (MQ=60)
                                                             CGGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATC                                  >  SRR4302545.9437068/1‑94 (MQ=60)
                                                              GGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTC                                 >  SRR4302545.8662316/1‑94 (MQ=60)
                                                              GGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTC                                 >  SRR4302545.8177476/1‑94 (MQ=60)
                                                              GGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTC                                 <  SRR4302545.526571/94‑1 (MQ=60)
                                                              GGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTC                                 >  SRR4302545.622181/1‑94 (MQ=60)
                                                              GGGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCACGAATTC                                 >  SRR4302545.10199338/1‑94 (MQ=60)
                                                               GGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCC                                <  SRR4302545.7069959/94‑1 (MQ=60)
                                                               GGACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCC                                <  SRR4302545.4541334/94‑1 (MQ=60)
                                                                GACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCCTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCA                               <  SRR4302545.8631857/94‑1 (MQ=60)
                                                                 ACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCAT                              >  SRR4302545.6529199/1‑94 (MQ=60)
                                                                 ACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCAT                              >  SRR4302545.233304/1‑94 (MQ=60)
                                                                 ACTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCAT                              >  SRR4302545.5823977/1‑94 (MQ=60)
                                                                  CTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATA                             <  SRR4302545.7362996/94‑1 (MQ=60)
                                                                  CTTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATA                             >  SRR4302545.5655387/1‑94 (MQ=60)
                                                                   TTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAG                            <  SRR4302545.2931251/94‑1 (MQ=60)
                                                                   TTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAG                            >  SRR4302545.4587127/1‑94 (MQ=60)
                                                                   TTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAG                            <  SRR4302545.62969/94‑1 (MQ=60)
                                                                   TTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAG                            <  SRR4302545.10318314/94‑1 (MQ=60)
                                                                   TTTGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAG                            >  SRR4302545.9887206/1‑94 (MQ=60)
                                                                    TTGGTATTAACCCTTAGGCTTATGTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGT                           <  SRR4302545.10600301/94‑1 (MQ=60)
                                                                     TGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTG                          <  SRR4302545.4622254/94‑1 (MQ=60)
                                                                     TGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTG                          <  SRR4302545.7764362/94‑1 (MQ=60)
                                                                     TGGTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCACGAATTCCATAGTG                          <  SRR4302545.8364986/94‑1 (MQ=60)
                                                                       GTATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGCATTCCATAGTGTA                        >  SRR4302545.528596/1‑94 (MQ=60)
                                                                        TATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTAT                       >  SRR4302545.10609124/1‑94 (MQ=60)
                                                                        TATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGCTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTAT                       >  SRR4302545.2113500/1‑94 (MQ=60)
                                                                         ATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATG                      >  SRR4302545.2963999/1‑94 (MQ=60)
                                                                         ATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATG                      >  SRR4302545.6746660/1‑94 (MQ=60)
                                                                         ATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATG                      >  SRR4302545.6746659/1‑94 (MQ=60)
                                                                         ATTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATG                      >  SRR4302545.7226789/1‑94 (MQ=60)
                                                                          TTAGCCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGA                     <  SRR4302545.4488973/94‑1 (MQ=60)
                                                                          TTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGA                     >  SRR4302545.3789352/1‑94 (MQ=60)
                                                                          TTAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGA                     >  SRR4302545.616337/1‑94 (MQ=60)
                                                                           TAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGAT                    >  SRR4302545.6478665/1‑94 (MQ=60)
                                                                           TAACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGAT                    <  SRR4302545.5966685/94‑1 (MQ=60)
                                                                           TAACCCTTAGGCTTATTTGCCACCGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTCCAGGAATTCCATAGTGTATGAT                    <  SRR4302545.5966957/94‑1 (MQ=60)
                                                                             ACCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGC                  >  SRR4302545.7728931/1‑94 (MQ=60)
                                                                             ACCCTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCA                 <  SRR4302545.8002527/94‑1 (MQ=60)
                                                                              CCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTTCTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCA                 >  SRR4302545.623321/1‑94 (MQ=60)
                                                                              CCCTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCA                 <  SRR4302545.8886217/94‑1 (MQ=60)
                                                                                CTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCACG               >  SRR4302545.1534126/1‑94 (MQ=60)
                                                                                CTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCACG               <  SRR4302545.1181074/94‑1 (MQ=60)
                                                                                CTTAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCACA               >  SRR4302545.10288950/1‑94 (MQ=60)
                                                                                  TAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCACGAC             <  SRR4302545.8559343/94‑1 (MQ=60)
                                                                                  TAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCACGAC             >  SRR4302545.5618297/1‑94 (MQ=60)
                                                                                  TAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCACGAC             <  SRR4302545.6876768/94‑1 (MQ=60)
                                                                                  TAGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCACGAC             >  SRR4302545.9142361/1‑94 (MQ=60)
                                                                                   AGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCACGACC            >  SRR4302545.7933064/1‑94 (MQ=60)
                                                                                   AGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCACGACC            >  SRR4302545.9542950/1‑94 (MQ=60)
                                                                                   AGGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCACGACC            >  SRR4302545.9542951/1‑94 (MQ=60)
                                                                                    GGCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCCTCATACTTCAGGAATTCCATAGTGTATGATGCACGACCT           >  SRR4302545.8322674/1‑94 (MQ=60)
                                                                                     GCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCACGACCTT          <  SRR4302545.6250646/94‑1 (MQ=60)
                                                                                     GCTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCACGACCTT          <  SRR4302545.5247965/94‑1 (MQ=60)
                                                                                      CTTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCACGACCTTT         <  SRR4302545.6295633/94‑1 (MQ=60)
                                                                                       TTATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCACGACCTTTG        >  SRR4302545.1965816/1‑94 (MQ=60)
                                                                                        TATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCACGACCTTTGG       <  SRR4302545.1214739/94‑1 (MQ=60)
                                                                                        TATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCACGACCTTTGG       <  SRR4302545.3421740/94‑1 (MQ=60)
                                                                                         ATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCACGACCTTTGGT      >  SRR4302545.9508882/1‑94 (MQ=60)
                                                                                         ATTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCACGACCTTTGGT      <  SRR4302545.9629697/94‑1 (MQ=60)
                                                                                          TTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCACGACCTTTGGTC     >  SRR4302545.6533493/1‑94 (MQ=60)
                                                                                          TTTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCACGACCTTTGGTC     >  SRR4302545.3331939/1‑94 (MQ=60)
                                                                                           TTGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCACGACCTTTGGTCA    <  SRR4302545.4078391/94‑1 (MQ=60)
                                                                                            TGCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCACGACCTTTGGTCAG   >  SRR4302545.8248457/1‑94 (MQ=60)
                                                                                             GCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCACGACCTTTGGTCAGA  >  SRR4302545.3666428/1‑94 (MQ=60)
                                                                                             GCCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCACGACCTTTGGTCAGA  >  SRR4302545.27375/1‑94 (MQ=60)
                                                                                             |                                                                                             
AATTTTTCTTTAGACACGGCTATATTCCTTACTATAGTGCTCTCCCCTTCAGGAGAGAGCACGGGACTTTGGTATTAACCCTTAGGCTTATTTACCACGGGCTTCAATTACGGCCTGAGCAACGTTACTCGGCGCTTCATCATACTTCAGGAATTCCATAGTGTATGATGCACGACCTTTGGTCAGA  >  NC_000913/3468950‑3469136

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: