Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
647 |
270.1 |
21258240 |
98.4% |
20918108 |
94.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,941,738 |
A→G |
noncoding (413/2906 nt) |
rrlC → |
23S ribosomal RNA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,941,738 | 0 | A | G | 98.7%
| 1217.6
/ 2.4
| 463 | noncoding (413/2906 nt) | rrlC | 23S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base A (2/4); new base G (246/209); total (248/215) |
| Fisher's exact test for biased strand distribution p-value = 4.22e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.97e-01 |
Only 100 of 472 total aligned reads displayed.
ACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGAGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGG > NC_000913/3941647‑3941820
|
aCAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGcc > 1:910101/1‑94 (MQ=255)
aGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCAt > 2:8355636/1‑94 (MQ=255)
aGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCAt > 1:10482297/1‑94 (MQ=255)
gggTGACAGCCCCGTACACAACAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGG‑GGGACCAtcc < 1:3764563/94‑1 (MQ=9)
gTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCAtcct < 2:3565545/94‑1 (MQ=255)
tGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCAtcctc > 2:1321535/1‑94 (MQ=255)
aCAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCa < 1:7055940/94‑1 (MQ=255)
cAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGGGGCCAtcctcc < 1:5875450/94‑1 (MQ=11)
cAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCaa > 1:1582913/1‑94 (MQ=255)
aGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAg < 2:10466584/94‑1 (MQ=255)
aGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAg > 1:7908614/1‑94 (MQ=255)
ccccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGc > 2:782247/1‑94 (MQ=255)
ccccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGc > 1:4359750/1‑94 (MQ=255)
cccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCt > 1:9790685/1‑94 (MQ=255)
cccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCt > 2:4146506/1‑94 (MQ=255)
cccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCt < 2:4266513/94‑1 (MQ=255)
cccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCt > 1:3888423/1‑94 (MQ=255)
ccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGGCCATCCTCCAAGGCt < 1:9367332/94‑1 (MQ=11)
gTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTaaa > 1:6245909/1‑94 (MQ=255)
gTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGATaaa > 2:6574949/1‑94 (MQ=255)
tACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAAt > 1:1180776/1‑94 (MQ=255)
acacAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATa > 2:4976802/1‑94 (MQ=255)
acacAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATa > 1:7198295/1‑94 (MQ=255)
acacAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATa > 1:2683841/1‑94 (MQ=255)
cacaAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATAc < 2:5357866/94‑1 (MQ=255)
cacaAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATAc < 1:4974070/94‑1 (MQ=255)
cacaAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATAc < 2:7466606/94‑1 (MQ=255)
acaAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACt < 2:5480900/94‑1 (MQ=255)
caAAAATGCACATATTGTGAGGTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGGCCATCCTCCAAGGCTAAATACt < 2:5981329/94‑1 (MQ=11)
aaaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCct < 1:3230183/94‑1 (MQ=255)
aaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCctg > 2:10275047/1‑94 (MQ=255)
aaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCctg > 2:4620945/1‑94 (MQ=255)
aTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCctgac > 1:1531909/1‑94 (MQ=255)
tGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCctgact < 1:411891/94‑1 (MQ=255)
tGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGG‑GGGGCCATCCTCCAAGGCTAAATACTCctgactg < 1:6465164/94‑1 (MQ=255)
cacaTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTcctgcctgc > 2:3415189/1‑93 (MQ=14)
cacaTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCctgactga > 1:6041660/1‑94 (MQ=255)
cacaTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCctgactga > 2:2931916/1‑94 (MQ=255)
cacaTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCctgactga < 1:9995749/94‑1 (MQ=255)
cacaTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCctgactga < 1:6784207/94‑1 (MQ=255)
caTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGAcc < 1:5630113/94‑1 (MQ=255)
caTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGAcc > 1:3117385/1‑94 (MQ=255)
caTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGAcc > 1:739823/1‑94 (MQ=255)
atatTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGCCCg > 2:5178250/1‑94 (MQ=255)
atatTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCg > 2:4903206/1‑94 (MQ=255)
atatTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCg > 1:8287122/1‑94 (MQ=255)
atTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGAt > 1:364531/1‑94 (MQ=255)
ttGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATa < 1:9666228/94‑1 (MQ=255)
tgtgAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAg < 1:4471456/94‑1 (MQ=16)
gtgAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTTCTGACTGACCGATAGt > 2:6331372/1‑94 (MQ=255)
gtgAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGt < 1:5387041/94‑1 (MQ=16)
tgAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTg > 2:6819889/1‑94 (MQ=16)
tgAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTg > 2:2356916/1‑94 (MQ=16)
gAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGa > 2:10596954/1‑94 (MQ=16)
aGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGaa > 1:2460809/1‑94 (MQ=16)
cTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAAcc < 2:1803271/94‑1 (MQ=12)
cGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATCGTGAACCAg > 1:10198058/1‑94 (MQ=255)
gATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGt > 2:9687312/1‑94 (MQ=16)
aGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCg > 1:2878977/1‑94 (MQ=16)
aGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCg < 2:7672973/94‑1 (MQ=12)
aGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCg < 1:9822078/94‑1 (MQ=16)
tAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTg < 2:2830184/94‑1 (MQ=16)
tAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTg > 2:6871564/1‑94 (MQ=16)
tAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTg < 2:9017055/94‑1 (MQ=16)
aGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGa < 2:9483283/94‑1 (MQ=255)
aGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGa > 1:1338951/1‑94 (MQ=16)
ggCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAgg > 1:3433984/1‑94 (MQ=12)
ggCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAgg < 2:386325/94‑1 (MQ=255)
gCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAggg > 2:9074231/1‑94 (MQ=12)
cGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGa > 1:2774932/1‑94 (MQ=12)
cGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGa > 2:5713072/1‑94 (MQ=16)
gggACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGaa > 2:5586548/1‑94 (MQ=12)
ggACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGaaa < 2:1505990/94‑1 (MQ=16)
gACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAg < 1:1723960/94‑1 (MQ=16)
cacGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGc < 2:3367272/94‑1 (MQ=16)
acGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCg > 1:7778432/1‑94 (MQ=16)
acGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCg > 2:9229585/1‑94 (MQ=12)
acGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCg < 1:183363/94‑1 (MQ=16)
cGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGa > 2:1954412/1‑94 (MQ=12)
gTGGTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGaa > 2:6071038/1‑94 (MQ=12)
ggTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGaaaa > 2:2601539/1‑94 (MQ=12)
ggTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGaaaa > 2:6246185/1‑94 (MQ=12)
ggTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGaaaa > 2:2087805/1‑94 (MQ=12)
gTATCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAg > 2:8525766/1‑94 (MQ=12)
aTCCTGTCTGCATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGaa > 1:10069862/1‑94 (MQ=255)
aTCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGaa > 1:8739459/1‑94 (MQ=12)
aTCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGaa > 2:866579/1‑94 (MQ=12)
tCCTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAAc < 2:7915844/94‑1 (MQ=16)
ccTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAAcc > 1:5768400/1‑94 (MQ=12)
ccTGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAAcc > 1:7710179/1‑94 (MQ=12)
tGTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAAcccc < 2:7193011/94‑1 (MQ=16)
gTCTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCg < 2:4034688/94‑1 (MQ=16)
cTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGc < 2:3108373/94‑1 (MQ=16)
cTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGc > 1:8541726/1‑94 (MQ=12)
cTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGc < 1:8093575/94‑1 (MQ=16)
cTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGc < 2:8118783/94‑1 (MQ=16)
cTGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACACCGGc > 1:2213855/1‑94 (MQ=255)
tGAATAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCg < 2:7081353/94‑1 (MQ=16)
aaTAT‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAg > 1:5186009/1‑94 (MQ=12)
atat‑‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAgg > 1:6569390/1‑94 (MQ=9)
|
ACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGAGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGG > NC_000913/3941647‑3941820
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
