Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,347,212	A→G	V80A (GTG→GCG)	mtgA ←	putative peptidoglycan enzyme

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,347,212	0	A	G	99.5%	649.6 / NA	194	V80A (GTG→GCG)	mtgA	putative peptidoglycan enzyme
Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (96/96); total (98/96)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 209 total aligned reads displayed.

TCATTGCGCTCGTTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCACCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAGCCAGGCGCTG  >  NC_000913/3347122‑3347301

tCATTGCGCTCGTTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGcc                                                                                         >  2:3361847/1‑93 (MQ=255)

 cATTGCGCTCGTTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCg                                                                                        >  2:4518345/1‑93 (MQ=255)

  aTTGCGCTCGTTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATcgccgc                                                                                       >  2:1256003/1‑93 (MQ=255)

   ttGCGCTCGTTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCgccgcc                                                                                      <  1:6022081/93‑1 (MQ=255)

     gcgcTCGTTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAg                                                                                    <  1:817876/93‑1 (MQ=255)

        cTCGTTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTcc                                                                                 >  1:2680022/1‑93 (MQ=255)

        cTCGTTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTcc                                                                                 <  1:227754/93‑1 (MQ=255)

         tCGTTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTccc                                                                                >  1:5595685/1‑93 (MQ=255)

         tCGTTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTccc                                                                                >  2:1781066/1‑93 (MQ=255)

          cGTTGTGCGCGAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGACCTTCTGCGGCAATCGCCGCCAGTCCCa                                                                               <  2:4104149/93‑1 (MQ=255)

            ttGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATc                                                                             <  2:4455158/93‑1 (MQ=255)

             tgtgCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCTCCAGTCCCATcc                                                                            <  2:2678354/93‑1 (MQ=255)

              gtgCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCa                                                                           <  1:3260406/93‑1 (MQ=255)

              gtgCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCa                                                                           <  1:3439802/93‑1 (MQ=255)

              gtgCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCa                                                                           <  1:733088/93‑1 (MQ=255)

               tgCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCAc                                                                          <  2:2072867/93‑1 (MQ=255)

               tgCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCAc                                                                          <  2:1352746/93‑1 (MQ=255)

               tgCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCAc                                                                          >  1:180749/1‑93 (MQ=255)

               tgCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCAc                                                                          <  2:2397301/93‑1 (MQ=255)

                gcgcCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACg                                                                         <  2:4913174/93‑1 (MQ=255)

                gcgcCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACg                                                                         <  2:3138719/93‑1 (MQ=255)

                 cgcCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACgg                                                                        >  2:709957/1‑93 (MQ=255)

                  gcCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGc                                                                       <  1:1514348/93‑1 (MQ=255)

                  gcCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGc                                                                       <  1:4882987/93‑1 (MQ=255)

                   ccAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCg                                                                      >  2:4660897/1‑93 (MQ=255)

                    cAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCga                                                                     <  1:244759/93‑1 (MQ=255)

                      ggggTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCGATCCACGGCgaga                                                                   >  1:2122122/1‑93 (MQ=255)

                      gggCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCgaga                                                                   <  1:755065/93‑1 (MQ=255)

                      gggCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCgaga                                                                   <  1:4000966/93‑1 (MQ=255)

                      gggCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCgaga                                                                   <  1:5815764/93‑1 (MQ=255)

                      gggCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCgaga                                                                   >  2:6078860/1‑93 (MQ=255)

                      gggCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCgaga                                                                   <  1:991055/93‑1 (MQ=255)

                      gggCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCgaga                                                                   >  1:6383763/1‑93 (MQ=255)

                         cTTTCTCAATGGAAGCTACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGAttt                                                                <  2:4032623/93‑1 (MQ=255)

                         cTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGAttt                                                                <  2:5896354/93‑1 (MQ=255)

                           ttCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGa                                                              <  1:4950042/93‑1 (MQ=255)

                            tctcAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGAt                                                             >  1:1586801/1‑93 (MQ=255)

                              tcAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATcc                                                           >  2:4847924/1‑93 (MQ=255)

                              tcAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATcc                                                           >  1:308328/1‑93 (MQ=255)

                               cAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCa                                                          <  1:1935869/93‑1 (MQ=255)

                                aaTGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCAt                                                         >  2:1843929/1‑93 (MQ=255)

                                aaTGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCAt                                                         <  2:2509506/93‑1 (MQ=255)

                                 aTGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATa                                                        <  2:4711572/93‑1 (MQ=255)

                                  tGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATAc                                                       >  1:394941/1‑93 (MQ=255)

                                    gAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTg                                                     <  1:3220181/93‑1 (MQ=255)

                                    gAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTg                                                     >  1:4317128/1‑93 (MQ=255)

                                    gAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTg                                                     >  1:1642126/1‑93 (MQ=255)

                                       gCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGAcc                                                  >  1:5282663/1‑93 (MQ=255)

                                        cGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATAATGAacc                                                 >  1:4415459/1‑93 (MQ=255)

                                         gACATCAATGTCCGAGTGCTCAGGAAATTTCAGCTCTTGTGAGACAATCGCGACGGGGCCCATCTACGGCGAGATTGGATCAATGCTGTccct                                                <  2:5151651/93‑2 (MQ=255)

                                          aCATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGACGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAg                                               >  2:6380675/1‑93 (MQ=255)

                                           aaTCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGt                                              <  1:5678584/92‑1 (MQ=255)

                                            aTCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTc                                             >  1:3518027/1‑93 (MQ=255)

                                            aTCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTc                                             >  1:797670/1‑93 (MQ=255)

                                             tCAAAGCGCCAGTGGTCAGGAAATTTCTGATCTTCGGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCa                                            >  2:1700455/1‑93 (MQ=255)

                                             tCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCa                                            >  1:6342044/1‑93 (MQ=255)

                                             tCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCa                                            <  1:5193617/93‑1 (MQ=255)

                                              cAAAGCCCCAGTGCTGAGGAAATTTCTGATCTTCTGCGGCAAGCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAg                                           <  2:3558665/93‑1 (MQ=255)

                                               aaaGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGa                                          >  1:534565/1‑93 (MQ=255)

                                               aaaGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGa                                          >  1:4993819/1‑93 (MQ=255)

                                                aaGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGaa                                         <  2:89797/93‑1 (MQ=255)

                                                 aGCCCTAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAAt                                        <  2:4353775/93‑1 (MQ=255)

                                                    cccAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAAtgtg                                     >  1:1057122/1‑93 (MQ=255)

                                                    cccAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAAtgtg                                     >  2:557013/1‑93 (MQ=255)

                                                      cAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGcc                                   <  1:2494692/93‑1 (MQ=255)

                                                       aGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCa                                  <  2:5240763/93‑1 (MQ=255)

                                                        gTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCAc                                 <  1:3747914/93‑1 (MQ=255)

                                                           cTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTa                              >  2:2809056/1‑93 (MQ=255)

                                                             cAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAAc                            <  2:2708909/93‑1 (MQ=255)

                                                              aGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACg                           >  2:795902/1‑93 (MQ=255)

                                                              aGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACg                           >  2:3190481/1‑93 (MQ=255)

                                                               ggAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGa                          >  2:1484755/1‑93 (MQ=255)

                                                                 aaaTTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGaaa                        <  2:3866697/93‑1 (MQ=255)

                                                                  aaTTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGaaaa                       >  1:2032821/1‑93 (MQ=255)

                                                                   aTTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAAt                      >  1:1268100/1‑93 (MQ=255)

                                                                   aTTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAAt                      >  2:5813227/1‑93 (MQ=255)

                                                                    tttCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAAtt                     <  1:381219/93‑1 (MQ=255)

                                                                    tttCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAAtt                     <  2:1503957/93‑1 (MQ=255)

                                                                    tttCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAAtt                     >  2:4169093/1‑93 (MQ=255)

                                                                    tttCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAAtt                     <  2:4185269/93‑1 (MQ=255)

                                                                    tttCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAAtt                     >  1:6269505/1‑93 (MQ=255)

                                                                     ttCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGACAATTg                    >  1:1678261/1‑93 (MQ=255)

                                                                     ttCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTg                    >  1:6216838/1‑93 (MQ=255)

                                                                     ttCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTg                    >  1:1359165/1‑93 (MQ=255)

                                                                       cTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGcc                  >  2:2338974/1‑93 (MQ=255)

                                                                       cTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGcc                  >  1:4114803/1‑93 (MQ=255)

                                                                          aTCTTCTGCGGCAATCTCCGCCAGTCGCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCAtt               <  2:6254566/93‑2 (MQ=255)

                                                                          aTCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATg               >  1:2802466/1‑93 (MQ=255)

                                                                           tcttctGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGc              >  1:46461/1‑93 (MQ=255)

                                                                           tcttctGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGc              >  2:4996125/1‑93 (MQ=255)

                                                                             ttctGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAg            >  1:6170721/1‑93 (MQ=255)

                                                                             ttctGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAg            >  2:3708945/1‑93 (MQ=255)

                                                                              tctGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAGc           >  1:1171211/1‑93 (MQ=255)

                                                                                tGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAGCCa         <  1:1705316/93‑1 (MQ=255)

                                                                                tGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAGCCa         <  1:1983530/93‑1 (MQ=255)

                                                                                 gCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAGCCAg        >  1:1015676/1‑93 (MQ=255)

                                                                                    gCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAGCCAGgcg     >  1:5918166/1‑93 (MQ=255)

                                                                                     cAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAGCCAGgcgc    <  1:3631660/93‑1 (MQ=255)

                                                                                     cAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAGCCAGgcgc    <  1:747841/93‑1 (MQ=255)

                                                                                       aTCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAGCCAGGCGCTg  >  2:6089004/1‑93 (MQ=255)

TCATTGCGCTCGTTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCACCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAGCCAGGCGCTG  >  NC_000913/3347122‑3347301

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTTTCATTGCGCTCGTTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCACCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAGCCAGGCGCTGACCT  >  NC_000913/3347119‑3347305

TTTTCATTGCGCTCGTTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCG                                                                                               <  SRR4302537.5748106/94‑1 (MQ=60)

TTTTCATTGCGCTCGTTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCG                                                                                               <  SRR4302537.2633862/94‑1 (MQ=60)

TTTTCATTGCGCTCGTTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCG                                                                                               <  SRR4302537.4201499/94‑1 (MQ=60)

TTTTCATTGCGCTCGTTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCG                                                                                               <  SRR4302537.2274174/94‑1 (MQ=60)

     ATTGCGCTCGTTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCC                                                                                          >  SRR4302537.2507135/1‑94 (MQ=60)

     ATTGCGCTCGTTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCC                                                                                          >  SRR4302537.4082223/1‑94 (MQ=60)

      TTGCGCTCGTTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCA                                                                                         <  SRR4302537.6063452/94‑1 (MQ=60)

        GCGCTCGTTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGT                                                                                       <  SRR4302537.823495/94‑1 (MQ=60)

         CGCTCGTTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTC                                                                                      <  SRR4302537.5604189/94‑1 (MQ=60)

          GCTCGTTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCC                                                                                     >  SRR4302537.2698735/1‑94 (MQ=60)

           CTCGTTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCC                                                                                    <  SRR4302537.229368/94‑1 (MQ=60)

           CTCGTTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCC                                                                                    >  SRR4302537.5633947/1‑94 (MQ=60)

           CTCGTTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCC                                                                                    >  SRR4302537.1758351/1‑94 (MQ=60)

           CTCGTTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCC                                                                                    >  SRR4302537.5204131/1‑94 (MQ=60)

             CGTTGTGCTCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCAT                                                                                  <  SRR4302537.3205901/94‑1 (MQ=60)

               TTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCC                                                                                >  SRR4302537.2464319/1‑94 (MQ=60)

               TTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCC                                                                                >  SRR4302537.3674936/1‑94 (MQ=60)

                 GTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCAC                                                                              <  SRR4302537.3283399/94‑1 (MQ=60)

                 GTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCAC                                                                              <  SRR4302537.3464146/94‑1 (MQ=60)

                 GTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCAC                                                                              <  SRR4302537.6056523/94‑1 (MQ=60)

                 GTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCAC                                                                              >  SRR4302537.182035/1‑94 (MQ=60)

                 GTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCAC                                                                              <  SRR4302537.1923619/94‑1 (MQ=60)

                 GTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCAC                                                                              <  SRR4302537.5308581/94‑1 (MQ=60)

                 GTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCAC                                                                              <  SRR4302537.121560/94‑1 (MQ=60)

                 GTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCAC                                                                              <  SRR4302537.738090/94‑1 (MQ=60)

                   GCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGG                                                                            <  SRR4302537.3326313/94‑1 (MQ=60)

                    CGCCGGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGC                                                                           <  SRR4302537.4993131/94‑1 (MQ=60)

                    CGCCAGGGCTTTCTCAATAGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGC                                                                           <  SRR4302537.589696/94‑1 (MQ=60)

                     GCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCG                                                                          <  SRR4302537.4916714/94‑1 (MQ=60)

                     GCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCG                                                                          <  SRR4302537.1524929/94‑1 (MQ=60)

                       CAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAG                                                                        <  SRR4302537.246493/94‑1 (MQ=60)

                       CAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAG                                                                        >  SRR4302537.2104255/1‑94 (MQ=60)

                        AGGGGTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCGATCCACGGCGAGA                                                                       >  SRR4302537.2137054/1‑94 (MQ=60)

                        AGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGA                                                                       >  SRR4302537.6427277/1‑94 (MQ=60)

                        AGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGA                                                                       >  SRR4302537.1368019/1‑94 (MQ=60)

                        AGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGA                                                                       >  SRR4302537.823387/1‑94 (MQ=60)

                         GGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGAT                                                                      <  SRR4302537.4028975/94‑1 (MQ=60)

                         GGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGAT                                                                      <  SRR4302537.997902/94‑1 (MQ=60)

                         GGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGAT                                                                      <  SRR4302537.5855631/94‑1 (MQ=60)

                         GGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGAT                                                                      <  SRR4302537.760213/94‑1 (MQ=60)

                          GGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATT                                                                     <  SRR4302537.4011098/94‑1 (MQ=60)

                          GGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATT                                                                     <  SRR4302537.6248134/94‑1 (MQ=60)

                          GGCTTGCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATT                                                                     <  SRR4302537.1663904/94‑1 (MQ=60)

                           GCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTT                                                                    <  SRR4302537.6320146/94‑1 (MQ=60)

                             TTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTATGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGA                                                                  >  SRR4302537.197640/1‑94 (MQ=60)

                             TTTCGCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGA                                                                  <  SRR4302537.1626890/94‑1 (MQ=60)

                              TTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGAT                                                                 >  SRR4302537.1597895/1‑94 (MQ=60)

                              TTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGAT                                                                 >  SRR4302537.801477/1‑94 (MQ=60)

                              TTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGAT                                                                 <  SRR4302537.4984182/94‑1 (MQ=60)

                                CTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCC                                                               >  SRR4302537.310467/1‑94 (MQ=60)

                                CTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCC                                                               >  SRR4302537.1473601/1‑94 (MQ=60)

                                  CAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCAT                                                             >  SRR4302537.3600913/1‑94 (MQ=60)

                                  CAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCAT                                                             <  SRR4302537.1949332/94‑1 (MQ=60)

                                    ATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATAC                                                           >  SRR4302537.397679/1‑94 (MQ=60)

                                     TGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACT                                                          <  SRR4302537.6312185/94‑1 (MQ=60)

                                      GGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTG                                                         >  SRR4302537.1653627/1‑94 (MQ=60)

                                      GGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTG                                                         <  SRR4302537.5755015/94‑1 (MQ=60)

                                      GGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTG                                                         >  SRR4302537.4347140/1‑94 (MQ=60)

                                       GAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGA                                                        <  SRR4302537.3242843/94‑1 (MQ=60)

                                       GAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGA                                                        <  SRR4302537.4809818/94‑1 (MQ=60)

                                        AAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGAC                                                       <  SRR4302537.669071/94‑1 (MQ=60)

                                        AAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGAC                                                       <  SRR4302537.3921933/94‑1 (MQ=60)

                                         AGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACC                                                      >  SRR4302537.5318996/1‑94 (MQ=60)

                                          GCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCC                                                     <  SRR4302537.2669713/94‑1 (MQ=60)

                                          GCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATAATGAACC                                                     >  SRR4302537.4445942/1‑94 (MQ=60)

                                             ACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGT                                                  >  SRR4302537.4570010/1‑94 (MQ=60)

                                              CATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTC                                                 <  SRR4302537.620054/94‑1 (MQ=60)

                                              CATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTC                                                 >  SRR4302537.803144/1‑94 (MQ=60)

                                              CATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTC                                                 <  SRR4302537.758016/94‑1 (MQ=60)

                                              CATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTC                                                 >  SRR4302537.3542918/1‑94 (MQ=60)

                                              AATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTC                                                 <  SRR4302537.5717434/94‑1 (MQ=60)

                                               ATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCA                                                >  SRR4302537.6385374/1‑94 (MQ=60)

                                               ATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCA                                                <  SRR4302537.219815/94‑1 (MQ=60)

                                               ATCAAAGCCCCAGTGCTCACGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCA                                                <  SRR4302537.1961999/94‑1 (MQ=60)

                                                TCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAG                                               <  SRR4302537.5229326/94‑1 (MQ=60)

                                                 CAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGA                                              >  SRR4302537.538234/1‑94 (MQ=60)

                                                 CAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGA                                              >  SRR4302537.5028227/1‑94 (MQ=60)

                                                  AAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAA                                             >  SRR4302537.1710035/1‑94 (MQ=60)

                                                    AGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATG                                           >  SRR4302537.4744808/1‑94 (MQ=60)

                                                      CCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTG                                         >  SRR4302537.4428929/1‑94 (MQ=60)

                                                      CCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTG                                         >  SRR4302537.1064414/1‑94 (MQ=60)

                                                       CCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTAAGAATGTGC                                        <  SRR4302537.5654037/94‑1 (MQ=60)

                                                        CCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCC                                       >  SRR4302537.6203962/1‑94 (MQ=60)

                                                         CAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCA                                      <  SRR4302537.3385662/94‑1 (MQ=60)

                                                         CAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCA                                      <  SRR4302537.2512255/94‑1 (MQ=60)

                                                           GTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACG                                    <  SRR4302537.3774237/94‑1 (MQ=60)

                                                             GCTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTA                                  >  SRR4302537.4160896/1‑94 (MQ=60)

                                                              CTCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAA                                 <  SRR4302537.3477341/94‑1 (MQ=60)

                                                               TCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAAC                                <  SRR4302537.6423437/94‑1 (MQ=60)

                                                               TCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAAC                                <  SRR4302537.2009737/94‑1 (MQ=60)

                                                               TCAGGAAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAAC                                <  SRR4302537.3823517/94‑1 (MQ=60)

                                                                CAGGAAATTTCTGATCTTCTGCGGCAATCCCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACG                               >  SRR4302537.2745093/1‑94 (MQ=60)

                                                                    AAATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAA                           >  SRR4302537.2046990/1‑94 (MQ=60)

                                                                     AATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAAT                          >  SRR4302537.746865/1‑94 (MQ=60)

                                                                     AATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAAT                          >  SRR4302537.1276921/1‑94 (MQ=60)

                                                                      ATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATT                         >  SRR4302537.6312532/1‑94 (MQ=60)

                                                                      ATTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATT                         >  SRR4302537.100458/1‑94 (MQ=60)

                                                                       TTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGACAATTG                        >  SRR4302537.1690010/1‑94 (MQ=60)

                                                                       TTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTG                        >  SRR4302537.6259647/1‑94 (MQ=60)

                                                                       TTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTG                        <  SRR4302537.383863/94‑1 (MQ=60)

                                                                       TTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTG                        >  SRR4302537.1368631/1‑94 (MQ=60)

                                                                       TTTCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTG                        <  SRR4302537.3252023/94‑1 (MQ=60)

                                                                         TCTGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCC                      >  SRR4302537.4143546/1‑94 (MQ=60)

                                                                         TCTGATCTTCTGCGGCAAGCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCC                      <  SRR4302537.1119666/94‑1 (MQ=60)

                                                                           TGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCAT                    >  SRR4302537.4939872/1‑94 (MQ=60)

                                                                           TGATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAACGTGCCACGTAACGAAAATTGCCAT                    >  SRR4302537.156717/1‑94 (MQ=60)

                                                                            GATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATG                   >  SRR4302537.2822055/1‑94 (MQ=60)

                                                                             ATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGC                  >  SRR4302537.46805/1‑94 (MQ=60)

                                                                             ATCTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGC                  >  SRR4302537.2908745/1‑94 (MQ=60)

                                                                               CTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAG                >  SRR4302537.1038617/1‑94 (MQ=60)

                                                                               CTTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAG                >  SRR4302537.6213212/1‑94 (MQ=60)

                                                                                TTCTGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAGC               >  SRR4302537.1179363/1‑94 (MQ=60)

                                                                                   TGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAGCCAG            <  SRR4302537.1997314/94‑1 (MQ=60)

                                                                                   TGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAGCCAG            >  SRR4302537.1022668/1‑94 (MQ=60)

                                                                                   TGCGGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAGCCAG            <  SRR4302537.1717240/94‑1 (MQ=60)

                                                                                      GGCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAGCCAGGCG         >  SRR4302537.5958779/1‑94 (MQ=60)

                                                                                      GCCAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAGCCAGGCG         <  SRR4302537.879582/94‑1 (MQ=60)

                                                                                        CAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAGCCAGGCGCT       >  SRR4302537.534711/1‑94 (MQ=60)

                                                                                        CAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAGCCAGGCGCT       <  SRR4302537.752943/94‑1 (MQ=60)

                                                                                        CAATCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAGCCAGGCGCT       <  SRR4302537.3657249/94‑1 (MQ=60)

                                                                                           TCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAGCCAGGCGCTGAC    >  SRR4302537.1005869/1‑94 (MQ=60)

                                                                                           TCGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAGCCAGGCGCTGAC    <  SRR4302537.4403630/94‑1 (MQ=60)

                                                                                            CGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAGCCAGGCGCTGACC   >  SRR4302537.815449/1‑94 (MQ=60)

                                                                                            CGCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAGCCAGGCGCTGACC   <  SRR4302537.4159351/94‑1 (MQ=60)

                                                                                             GCCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAGCCAGGCGCTGACCT  <  SRR4302537.1801621/94‑1 (MQ=60)

TTTTCATTGCGCTCGTTGTGCGCCAGGGCTTTCTCAATGGAAGCGACATCAAAGCCCCAGTGCTCAGGAAATTTCTGATCTTCTGCGGCAATCACCGCCAGTCCCATCCACGGCGAGATTTGATCCATACTGACCCAGTCAGAATGTGCCACGTAACGAAAATTGCCATGCAGCCAGGCGCTGACCT  >  NC_000913/3347119‑3347305

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`