Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,419,398 |
(T)7→6 |
coding (441/1107 nt) |
yhdY → |
putative transport system permease protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,419,392 | 0 | T | . | 99.5%
| 915.8
/ ‑3.6
| 199 | coding (435/1107 nt) | yhdY | putative transport system permease protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base . (109/89); minor base G (1/0); total (110/89) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
Only 100 of 218 total aligned reads displayed.
ATGTTCTGGAAAATACTCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGGCGC > NC_000913/3419300‑3419480
|
ttCTGGAAAATACTCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGtttt < 2:6405345/93‑1 (MQ=255)
tCTGGAAAATACTCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGttttt < 1:3258655/93‑1 (MQ=255)
ggAAAATACTCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGttttttgc > 2:2627742/1‑91 (MQ=255)
aaaaTACTCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGttttttgctc < 1:1515900/93‑5 (MQ=255)
aaaaTACTCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGttttttgctc > 2:445165/1‑89 (MQ=255)
aaaTACTCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGctct < 2:5672146/93‑1 (MQ=255)
aaTACTCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCtt > 2:1743353/1‑93 (MQ=255)
tACTCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGa > 1:1251852/1‑93 (MQ=255)
tACTCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGa < 2:3512165/93‑1 (MQ=255)
tACTCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGa < 1:887784/93‑1 (MQ=255)
cTCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAgg > 2:2989988/1‑92 (MQ=255)
cTCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGc > 2:2421058/1‑93 (MQ=255)
cTCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGc < 2:6087419/93‑1 (MQ=255)
cTCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑GTTTTTGCTCTTGAGc > 2:5712780/1‑93 (MQ=255)
tCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCg < 1:2989854/93‑1 (MQ=255)
tCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCg < 2:4153210/93‑1 (MQ=255)
tCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCg > 1:662505/1‑93 (MQ=255)
tCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCg > 1:2196703/1‑93 (MQ=255)
ccGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCggg < 2:5905006/93‑1 (MQ=255)
ccGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCggg > 1:5046342/1‑93 (MQ=255)
gCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGtt > 2:4254023/1‑93 (MQ=255)
gCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGtt < 1:2502255/93‑1 (MQ=255)
gCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGtt > 1:344691/1‑93 (MQ=255)
gCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑GTTTTTGCTCTTGAGCGGGtt > 2:5586998/1‑93 (MQ=255)
aTCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGa > 1:4503131/1‑93 (MQ=255)
aTCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGa > 1:5667456/1‑93 (MQ=255)
tCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGaa > 1:2390538/1‑93 (MQ=255)
tCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGaa > 2:3618675/1‑93 (MQ=255)
tCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGaa > 1:749417/1‑93 (MQ=255)
ggTCGCTATATTGCGGCCTGGGCGGTGATTTACCTACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAAccc < 2:3096706/93‑1 (MQ=255)
ggTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAAccc > 2:3129553/1‑93 (MQ=255)
ggTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAAccc < 1:1822090/93‑1 (MQ=255)
gTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCg < 2:4570994/93‑1 (MQ=255)
cGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGGTGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCTGc > 1:2721717/1‑93 (MQ=255)
gCTATATTGCGGCCTGGGCGGTGATTTAACCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGGTGAAACCCGGCa > 1:2800837/1‑93 (MQ=255)
cTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCaa < 1:4488332/93‑1 (MQ=255)
cTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCaa > 2:1083025/1‑93 (MQ=255)
tataTTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTCGAGCGGGTTGAAACCCGGCAAt < 1:2271788/93‑1 (MQ=255)
atatTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATg < 1:3225997/93‑1 (MQ=255)
atTGCGGCCTGGGTGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATggg > 2:6204809/1‑93 (MQ=255)
atTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATggg > 1:4289334/1‑93 (MQ=255)
tGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGGGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGGTGAAATCCTGCAATGgggc > 2:5518001/1‑93 (MQ=255)
gCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGgggcgggc > 2:4700827/1‑93 (MQ=255)
gcTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCt < 1:5730321/92‑1 (MQ=255)
ccTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCt > 1:4776267/1‑93 (MQ=255)
cTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTg > 2:6439616/1‑93 (MQ=255)
tGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGa < 1:3703101/93‑1 (MQ=255)
gggCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGAc > 1:3971712/1‑93 (MQ=255)
gggCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGAc < 2:2189690/93‑1 (MQ=255)
gCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGc > 1:4059884/1‑93 (MQ=255)
gCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGc < 2:187739/93‑1 (MQ=255)
tGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAAc < 2:3375770/93‑1 (MQ=255)
tGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAAc < 1:6010636/93‑1 (MQ=255)
tGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAAc > 1:5213329/1‑93 (MQ=255)
tGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAAc < 2:2798507/93‑1 (MQ=255)
gATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACt > 2:357510/1‑93 (MQ=255)
ttNCNCNCTGATTGTCTGGTGNNTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTa < 1:2569177/93‑1 (MQ=255)
ttACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGTGGGTTGAAACCCGGCAATGGGGCGGGCTGTCGCTTACcttt > 2:14685/1‑92 (MQ=255)
aCCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAat < 2:839874/93‑1 (MQ=255)
cccACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTGGAGTGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAatt < 2:3987592/93‑1 (MQ=255)
ccACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAatta < 2:288270/93‑1 (MQ=255)
ccACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAatta > 1:3920579/1‑93 (MQ=255)
ccACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGCGCGGGCTGACGCTAACTTTAatta > 1:6145396/1‑93 (MQ=255)
aCTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAattatt < 1:3477084/93‑1 (MQ=255)
aCTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAattatt < 2:4492121/93‑1 (MQ=255)
aCTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAattatt < 1:1888709/93‑1 (MQ=255)
aCTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAattatt > 1:100737/1‑93 (MQ=255)
cTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGATTAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTg > 1:4926117/1‑93 (MQ=255)
tGATTGTCTGGTGGCTGATGTATGTCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGc < 2:5208965/93‑1 (MQ=255)
tGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGc > 1:4972995/1‑93 (MQ=255)
tGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGc < 2:5439731/93‑1 (MQ=255)
tGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGc > 2:5121279/1‑93 (MQ=255)
tGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGc > 2:758358/1‑93 (MQ=255)
tGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTATTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTTACTTTAATTATTGc > 2:3485847/1‑93 (MQ=255)
gATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCa < 1:586660/93‑1 (MQ=255)
ttGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATc < 1:5449879/93‑1 (MQ=255)
gTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAg < 1:3069034/93‑1 (MQ=255)
gTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAg < 1:2777237/93‑1 (MQ=255)
tCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGt > 1:4334358/1‑93 (MQ=255)
tggtggCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTg < 2:126094/93‑1 (MQ=255)
tggtggCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTg < 1:1609446/93‑1 (MQ=255)
tggtggCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTg < 1:892852/93‑1 (MQ=255)
tggtggCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTg > 1:2849699/1‑93 (MQ=255)
tggtggCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGCTg > 2:2463651/1‑93 (MQ=255)
tggtggCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCCGCAATGGGGCGGGCTGACGCTACATTTAATTATTGCATCAGTTg > 2:3525654/1‑93 (MQ=255)
ggtggCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTgg < 1:4467150/93‑1 (MQ=255)
gtggCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGAGGGGTGACGCTAAATTTTATTTATTCATCAGTTtgg > 2:4391898/1‑93 (MQ=255)
tggCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGa > 1:6302176/1‑93 (MQ=255)
ggatGATGTATGGCGG‑TTTTGTGCTCTTGAGCGGGTTGAAACCCGGAAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGAt < 2:3152007/90‑1 (MQ=255)
cTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTg < 1:3145269/93‑1 (MQ=255)
tgctGTCTGGCGG‑TTTTTTGCTCTTGAGCTGGTTGAAGCCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTgg < 2:4832141/90‑2 (MQ=255)
tGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGc > 2:5703236/1‑93 (MQ=255)
aTGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCgg < 2:1642482/93‑1 (MQ=255)
tGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCggg > 1:1209040/1‑93 (MQ=255)
gTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCgggg > 2:4102155/1‑93 (MQ=255)
gTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCgggg < 1:117918/93‑1 (MQ=255)
gTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCgggg > 2:4792040/1‑93 (MQ=255)
tATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCggggg < 2:6338823/93‑1 (MQ=255)
tATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCggggg < 2:6379197/93‑1 (MQ=255)
aTGGCGGG‑TTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGGTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGgc > 1:4655592/1‑93 (MQ=255)
|
ATGTTCTGGAAAATACTCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGGCGC > NC_000913/3419300‑3419480
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTGGAAAATACTCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGGCGCTACCGTGGGGG > NC_000913/3419305‑3419491
|
CTGGAAAATACTCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTG > SRR4302537.3499220/1‑94 (MQ=60)
AAAATACTCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCT < SRR4302537.1526493/94‑1 (MQ=60)
AAATACTCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTT > SRR4302537.3253843/1‑94 (MQ=60)
ATACTCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGA > SRR4302537.1260565/1‑94 (MQ=60)
TACTCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAG < SRR4302537.893890/94‑1 (MQ=60)
TACTCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAG < SRR4302537.6151112/94‑1 (MQ=60)
ACTCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGC > SRR4302537.4356009/1‑94 (MQ=60)
CTCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCG > SRR4302537.667013/1‑94 (MQ=60)
CTCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCG > SRR4302537.2212182/1‑94 (MQ=60)
TCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTATCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑ATTTTTGCTCTTGAGCGG > SRR4302537.2744694/1‑94 (MQ=60)
TCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGG < SRR4302537.3010729/94‑1 (MQ=60)
TCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGG < SRR4302537.2156215/94‑1 (MQ=60)
CCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGG > SRR4302537.5081096/1‑94 (MQ=60)
CCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGG < SRR4302537.3013946/94‑1 (MQ=60)
CCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGT > SRR4302537.4509000/1‑94 (MQ=60)
CCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGT > SRR4302537.3844609/1‑94 (MQ=60)
CCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGT < SRR4302537.4459136/94‑1 (MQ=60)
CGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTT > SRR4302537.5788301/1‑94 (MQ=60)
CGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTT > SRR4302537.347087/1‑94 (MQ=60)
GCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTG > SRR4302537.4250218/1‑94 (MQ=60)
GCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTG < SRR4302537.2519858/94‑1 (MQ=60)
CATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGA > SRR4302537.4534271/1‑94 (MQ=60)
CATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGA > SRR4302537.572472/1‑94 (MQ=60)
CATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGA > SRR4302537.5706237/1‑94 (MQ=60)
CATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGCATGGCGG‑GTTTTTGCTCTTGAGCGGGTTGA > SRR4302537.1376505/1‑94 (MQ=60)
ATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAA > SRR4302537.4017544/1‑94 (MQ=60)
ATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAA > SRR4302537.2407371/1‑94 (MQ=60)
ATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAA > SRR4302537.754529/1‑94 (MQ=60)
GCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACC > SRR4302537.1861517/1‑94 (MQ=60)
GGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCG < SRR4302537.1834792/94‑1 (MQ=60)
GGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCG > SRR4302537.2797251/1‑94 (MQ=60)
GTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGG > SRR4302537.3347717/1‑94 (MQ=60)
TCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGGTGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCTGC > SRR4302537.2740722/1‑94 (MQ=60)
TCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGAATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCAGGC > SRR4302537.2895220/1‑94 (MQ=60)
CGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCA < SRR4302537.2942778/94‑1 (MQ=60)
CGCTATATTGCGGCCTGGGCGGTGATTTAACCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGGTGAAACCCGGCA > SRR4302537.2820416/1‑94 (MQ=60)
CTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAAT < SRR4302537.4519381/94‑1 (MQ=60)
TATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTCGAGCGGGTTGAAACCCGGCAATG < SRR4302537.2287829/94‑1 (MQ=60)
ATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGG < SRR4302537.3248700/94‑1 (MQ=60)
TATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGG > SRR4302537.4319150/1‑94 (MQ=60)
GCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGG < SRR4302537.1094162/94‑1 (MQ=60)
CGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGG < SRR4302537.5053336/94‑1 (MQ=60)
GGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGC < SRR4302537.898139/94‑1 (MQ=60)
GGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGC > SRR4302537.3984081/1‑94 (MQ=60)
GGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGC > SRR4302537.4976675/1‑94 (MQ=60)
GCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCT > SRR4302537.4809241/1‑94 (MQ=60)
GCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTG < SRR4302537.5769546/94‑1 (MQ=60)
CTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGA > SRR4302537.4889357/1‑94 (MQ=60)
TGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGAC > SRR4302537.3999511/1‑94 (MQ=60)
TGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGAC < SRR4302537.3729146/94‑1 (MQ=60)
GGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGC > SRR4302537.4088257/1‑94 (MQ=60)
GCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCT > SRR4302537.4107510/1‑94 (MQ=60)
GCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCT > SRR4302537.2534682/1‑94 (MQ=60)
GGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAA > SRR4302537.6360729/1‑94 (MQ=60)
GTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAAC < SRR4302537.5916521/94‑1 (MQ=60)
GTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAAC > SRR4302537.5249176/1‑94 (MQ=60)
TGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACT < SRR4302537.6051930/94‑1 (MQ=60)
TTNCNCNCTGATTGTCTGGTGNNTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAA < SRR4302537.2587178/94‑1 (MQ=60)
ACCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCTGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATT < SRR4302537.4593761/94‑1 (MQ=60)
CCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTA > SRR4302537.3947980/1‑94 (MQ=60)
CCCACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGCGCGGGCTGACGCTAACTTTAATTA > SRR4302537.6187663/1‑94 (MQ=60)
CACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATT > SRR4302537.101461/1‑94 (MQ=60)
ACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTG < SRR4302537.3501691/94‑1 (MQ=60)
ACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTG < SRR4302537.1901841/94‑1 (MQ=60)
ACTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGATTAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTG > SRR4302537.4960076/1‑94 (MQ=60)
CTGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGC > SRR4302537.5007269/1‑94 (MQ=60)
TGATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCA < SRR4302537.2337402/94‑1 (MQ=60)
GATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCAT > SRR4302537.1189707/1‑94 (MQ=60)
GATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCAT > SRR4302537.5306211/1‑94 (MQ=60)
GATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCAT < SRR4302537.531232/94‑1 (MQ=60)
GATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCAT < SRR4302537.590668/94‑1 (MQ=60)
GACTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCAT > SRR4302537.6292850/1‑94 (MQ=60)
ATTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATC < SRR4302537.251002/94‑1 (MQ=60)
TTGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCA < SRR4302537.5487054/94‑1 (MQ=60)
TGTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAG < SRR4302537.1553216/94‑1 (MQ=60)
GTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGT > SRR4302537.4364462/1‑94 (MQ=60)
GTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGT < SRR4302537.3090420/94‑1 (MQ=60)
GTCTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGT < SRR4302537.2796653/94‑1 (MQ=60)
CTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTG > SRR4302537.2275407/1‑94 (MQ=60)
CTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTG > SRR4302537.4530443/1‑94 (MQ=60)
CTGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTG > SRR4302537.2869653/1‑94 (MQ=60)
TGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGG < SRR4302537.1620698/94‑1 (MQ=60)
TGGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGG < SRR4302537.899014/94‑1 (MQ=60)
GGTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGG < SRR4302537.4498042/94‑1 (MQ=60)
GTGGCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGA > SRR4302537.6345333/1‑94 (MQ=60)
GTGGCTGATGTATGGCGG‑GTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGTGGCGGGGTGACGCTAACCTTAATTATTTTATCAGTTTGGA > SRR4302537.4526217/1‑94 (MQ=60)
GCTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTG < SRR4302537.741157/94‑1 (MQ=60)
CTGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC < SRR4302537.3167341/94‑1 (MQ=60)
TGATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCG > SRR4302537.893734/1‑94 (MQ=60)
GATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGG < SRR4302537.512296/94‑1 (MQ=60)
ATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGG > SRR4302537.1217454/1‑94 (MQ=60)
ATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGG > SRR4302537.267345/1‑94 (MQ=60)
ATGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGG > SRR4302537.6217792/1‑94 (MQ=60)
TGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGG > SRR4302537.2866310/1‑94 (MQ=60)
TGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGG < SRR4302537.1239672/94‑1 (MQ=60)
TGTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGAGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGG < SRR4302537.5583466/94‑1 (MQ=60)
GTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGG > SRR4302537.3494782/1‑94 (MQ=60)
GTATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGG < SRR4302537.118765/94‑1 (MQ=60)
TATGGCGG‑GTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGGTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGGC > SRR4302537.4687781/1‑94 (MQ=60)
ATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGGCG < SRR4302537.1776211/94‑1 (MQ=60)
ATGGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGGCG > SRR4302537.3136608/1‑94 (MQ=60)
GGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCTGTTGGGATTGCGGGGGCGGT > SRR4302537.1491258/1‑94 (MQ=60)
GGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGGCGCT > SRR4302537.4628716/1‑94 (MQ=60)
GGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGGCGCT < SRR4302537.3578884/94‑1 (MQ=60)
GGCGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGGCGCT > SRR4302537.3501449/1‑94 (MQ=60)
CGG‑TTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGGCGCTAC > SRR4302537.2675657/1‑94 (MQ=60)
GGTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGGCGCTACC > SRR4302537.1013782/1‑94 (MQ=60)
GGTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGGCGCTACC < SRR4302537.5620744/94‑1 (MQ=60)
GGTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGGCGCTACC < SRR4302537.5559250/94‑1 (MQ=60)
GTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGGCGCTACCG > SRR4302537.536454/1‑94 (MQ=60)
GTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGGCGCTACCG < SRR4302537.3919428/94‑1 (MQ=60)
TTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGGCGCTACCGTG < SRR4302537.3179880/94‑1 (MQ=60)
TTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGGCGCTACCGTGG < SRR4302537.845969/94‑1 (MQ=60)
TTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGGCGCTACCGTGGG > SRR4302537.5322389/1‑94 (MQ=60)
TTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGAATGCGGGGGCGCTACCGTGGG > SRR4302537.2310073/1‑94 (MQ=60)
TTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGGCGCTACCGTGGGG < SRR4302537.4013902/94‑1 (MQ=60)
TTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGGCGCTACCGTGGGG > SRR4302537.4903172/1‑94 (MQ=60)
TTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGGCGCTACCGTGGGG < SRR4302537.1408707/94‑1 (MQ=60)
TGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGGCGGCACCGGGGGGG > SRR4302537.58020/1‑94 (MQ=60)
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CTGGAAAATACTCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGGCGCTACCGTGGGGG > NC_000913/3419305‑3419491
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
