Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,544,357	+G	coding (163/1314 nt)	gntT →	gluconate permease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,544,356	1	.	G	100.0%	702.3 / NA	201	V54V (GTC→GTG)	gntT	gluconate permease
Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (84/117); total (84/117)

Only 100 of 228 total aligned reads displayed.

GGCTTCATCGCTCTCGTCCTCG‑TGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTC‑GC‑GGACG‑TCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGCACAA  >  NC_000913/3544264‑3544437

ggCTTCATCGCTCTCGTCCTCG‑TGGCGCTTGCTGTTGGATTAGTGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTc                                                                                      >  2:3016986/1‑93 (MQ=255)

ggCTTCATCGCTCTCGTCCTCG‑TGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTc                                                                                      <  1:4454761/93‑1 (MQ=255)

 gcctCATTGCTCTTGGTCTCGTTGCCGCTTGTTGTT‑GAATAAAGCAAGGAATGGCGCTTGATAAAGTTATTGGCTCCATCAAAGCCGGTGTc‑g                                                                                    <  1:1773965/90‑1 (MQ=255)

 gCTTCATCGCTCTCGTCCTCG‑TGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTc‑g                                                                                    >  2:3434403/1‑93 (MQ=255)

   ttCATCGCTCTCGTCCTCG‑TGGCGCTTGCTGTTGGATTAATACAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTc‑ggc                                                                                  <  1:1596012/93‑3 (MQ=255)

    tCATCGCTCTCGTCCTCG‑TGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCTATCAAAGCCGGTGTc‑ggcg                                                                                 >  1:2809279/1‑90 (MQ=255)

    tCATCGCTCTCGTCCTCG‑TGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGATGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTc‑ggcg                                                                                 >  1:3552123/1‑90 (MQ=255)

     cATCGCTCTCGTCCTCG‑TGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTc‑ggcgg                                                                                <  1:4312427/93‑5 (MQ=255)

     cATCGCTCTCGTCCTCG‑TGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTc‑ggcgg                                                                                >  2:4891662/1‑89 (MQ=255)

     cATCGCTCTCGTCCTCG‑TGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTc‑ggcgg                                                                                <  1:3220614/93‑5 (MQ=255)

                   tCG‑TGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGcc                                                                   >  1:1953254/1‑93 (MQ=255)

                   tCG‑TGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGcc                                                                   >  2:1381641/1‑93 (MQ=255)

                   tCG‑TGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGcc                                                                   >  2:3840346/1‑93 (MQ=255)

                   tCG‑TGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGcc                                                                   <  2:592182/93‑1 (MQ=255)

                   tCG‑TGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGcc                                                                   <  2:5949057/93‑1 (MQ=255)

                     g‑TGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCtt                                                                 >  1:6437061/1‑93 (MQ=255)

                        ggCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGc                                                               <  1:4291076/93‑1 (MQ=255)

                        ggCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGc                                                               >  1:3883908/1‑93 (MQ=255)

                        ggCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGc                                                               <  1:5109342/93‑1 (MQ=255)

                        ggCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGc                                                               >  1:5655263/1‑93 (MQ=255)

                         gcgcTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGcc                                                              >  1:2392888/1‑93 (MQ=255)

                         gcgcTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGcc                                                              <  2:5436049/93‑1 (MQ=255)

                             ttGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGa                                                          <  1:6198028/93‑1 (MQ=255)

                             ttGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGa                                                          <  1:6043238/93‑1 (MQ=255)

                              tGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGAt                                                         >  2:2099417/1‑93 (MQ=255)

                              tGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGAt                                                         <  1:2293575/93‑1 (MQ=255)

                               gCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATc                                                        <  2:1092428/93‑1 (MQ=255)

                               gCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATc                                                        <  1:2445489/93‑1 (MQ=255)

                                cTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCa                                                       <  1:1749752/93‑1 (MQ=255)

                                  gTTGGATTAATGCAAGTAATGCCTCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGAAGCTCGGTAGCCTTGCCCTGATCATg                                                     <  2:3271082/93‑1 (MQ=255)

                                  gTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATg                                                     >  2:1061294/1‑93 (MQ=255)

                                  gTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATg                                                     <  1:4959949/93‑1 (MQ=255)

                                  gTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATg                                                     >  2:5581192/1‑93 (MQ=255)

                                  gTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATg                                                     <  2:792847/93‑1 (MQ=255)

                                    tGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATggg                                                   >  1:1568210/1‑93 (MQ=255)

                                     ggATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGt                                                  >  2:6138761/1‑93 (MQ=255)

                                       aTTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATTGGttt                                                >  2:3097701/1‑93 (MQ=255)

                                       aTTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGttt                                                <  2:3924351/93‑1 (MQ=255)

                                        ttAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGtttt                                               <  1:4580954/93‑1 (MQ=255)

                                          aaTGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTgg                                             <  1:3852788/93‑1 (MQ=255)

                                           aTGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGgc                                            <  2:1262832/93‑1 (MQ=255)

                                           aTGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCACGGGTTTTGgc                                            >  1:3475627/1‑93 (MQ=255)

                                            tGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGgcg                                           >  2:4083426/1‑93 (MQ=255)

                                             gCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGgcgc                                          <  2:4337609/93‑1 (MQ=255)

                                               aaGGAATGCCGCTGGATAAAGTTATTGGATCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCaa                                        <  2:1947654/93‑1 (MQ=255)

                                                aGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAAt                                       >  1:4669089/1‑93 (MQ=255)

                                                   aaTGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCGTGGGATTTGGCGCAATGCt                                    >  1:3938021/1‑93 (MQ=255)

                                                   aaTGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCt                                    >  2:610508/1‑93 (MQ=255)

                                                    aTGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTg                                   <  2:6262283/93‑1 (MQ=255)

                                                     tGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTgg                                  <  1:3528036/93‑1 (MQ=255)

                                                      gCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTggg                                 <  2:1562647/93‑1 (MQ=255)

                                                         gCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCaa                              >  1:2261653/1‑93 (MQ=255)

                                                           tGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCaaaa                            <  2:4247800/93‑1 (MQ=255)

                                                           tGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCaaaa                            >  1:1180660/1‑93 (MQ=255)

                                                           tGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCaaaa                            >  1:1237520/1‑93 (MQ=255)

                                                            ggATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAAt                           >  1:1008184/1‑93 (MQ=255)

                                                            ggATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAAt                           <  1:5859456/93‑1 (MQ=255)

                                                             gATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATg                          >  1:5521941/1‑93 (MQ=255)

                                                              aTAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGc                         <  1:2708406/93‑1 (MQ=255)

                                                              aTAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAAAGc                         >  2:5062281/1‑93 (MQ=255)

                                                               tAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCt                        >  1:5991524/1‑93 (MQ=255)

                                                               tAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCt                        >  2:4652071/1‑93 (MQ=255)

                                                                aaaGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTg                       >  1:3131179/1‑93 (MQ=255)

                                                                aaaGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTg                       <  2:3528531/93‑1 (MQ=255)

                                                                aaaGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTg                       >  1:5446684/1‑93 (MQ=255)

                                                                 aaGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTgg                      <  2:534027/93‑1 (MQ=255)

                                                                  aGTTATTGGCTCGATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTGTGGCGCAATGCTGGGCAAAATGCTGGc                     <  1:2954578/93‑1 (MQ=255)

                                                                  aGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGc                     >  2:4063550/1‑93 (MQ=255)

                                                                  aGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGc                     <  2:420997/93‑1 (MQ=255)

                                                                   gTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCa                    <  1:2754581/93‑1 (MQ=255)

                                                                   gTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCa                    >  2:6299004/1‑93 (MQ=255)

                                                                   attATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCa                    <  1:3267538/92‑1 (MQ=255)

                                                                     tATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGa                  <  1:4855017/93‑1 (MQ=255)

                                                                      aTTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGAc                 <  2:4516643/93‑1 (MQ=255)

                                                                      aTTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGAc                 <  2:1454022/93‑1 (MQ=255)

                                                                      aTTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGAc                 <  1:3004474/93‑1 (MQ=255)

                                                                        tGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTg               <  2:4707373/93‑1 (MQ=255)

                                                                         ggCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGc              <  2:1472937/93‑1 (MQ=255)

                                                                          gCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCg             >  2:279207/1‑93 (MQ=255)

                                                                          gCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCg             <  2:5169849/93‑1 (MQ=255)

                                                                            tCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGt           <  1:1141906/93‑1 (MQ=255)

                                                                            tCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGt           <  1:4408553/93‑1 (MQ=255)

                                                                            tCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGt           <  1:4067962/93‑1 (MQ=255)

                                                                            tCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGt           <  1:215784/93‑1 (MQ=255)

                                                                            tCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGt           >  1:2530309/1‑93 (MQ=255)

                                                                             ccATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTg          <  2:2767473/93‑1 (MQ=255)

                                                                              cATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTgg         <  1:5198374/93‑1 (MQ=255)

                                                                              cATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTgg         <  1:5824133/93‑1 (MQ=255)

                                                                              cATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTgg         <  2:3990494/93‑1 (MQ=255)

                                                                               aTCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTCgc        >  2:2383000/1‑93 (MQ=255)

                                                                                tCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGgcg       <  1:13900/93‑1 (MQ=255)

                                                                                tCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGgcg       >  2:2288987/1‑93 (MQ=255)

                                                                                 cAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGgcgc      <  2:1671736/93‑1 (MQ=255)

                                                                                 cAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGgcgc      <  2:373521/93‑1 (MQ=255)

                                                                                  aaaGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCCTGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGca     >  1:785199/1‑93 (MQ=255)

                                                                                  aaaGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGca     <  1:5290660/93‑1 (MQ=255)

                                                                                   aaGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGcac    <  2:2513293/93‑1 (MQ=255)

                                                                                   aaGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGcac    >  2:2046766/1‑93 (MQ=255)

                                                                                   aaGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGcac    >  1:1465917/1‑93 (MQ=255)

                                                                                     gCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGCACaa  <  1:2211417/93‑1 (MQ=255)

GGCTTCATCGCTCTCGTCCTCG‑TGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTC‑GC‑GGACG‑TCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGCACAA  >  NC_000913/3544264‑3544437

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGCTTCATCGCTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑‑CGGACG‑TCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGCACAAC  >  NC_000913/3544264‑3544438

GGCTTCATCGCTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG                                                                                      <  SRR4302537.5081237/94‑1 (MQ=60)

GGCTTCATCGCTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG                                                                                      <  SRR4302537.4485524/94‑1 (MQ=60)

CGCTTCAGCGCTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG                                                                                      <  SRR4302537.4485523/94‑1 (MQ=60)

 gcctcattgctcttggtctcgttgccgcttgttgttgaataaaGCAAGGAATGGCGCTTGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑‑G                                                                                   <  SRR4302537.1786318/51‑1 (MQ=60)

  CTTCATCGCTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGgc                                                                                    <  SRR4302537.1768032/94‑3 (MQ=60)

   TTCATCGCTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCTATCAAAGCCGGTGTCGgcg                                                                                   >  SRR4302537.2828917/1‑91 (MQ=60)

   TTCATCGCTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGgcg                                                                                   <  SRR4302537.4457393/94‑4 (MQ=60)

   TTCATCGCTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGATGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGgcg                                                                                   >  SRR4302537.3577205/1‑91 (MQ=60)

   TTCATCGCTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATACAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGgcg                                                                                   <  SRR4302537.1607164/94‑4 (MQ=60)

     CATCGCTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGgcggg                                                                                 <  SRR4302537.4342396/94‑6 (MQ=60)

     CATCGCTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGgcggg                                                                                 <  SRR4302537.199238/94‑6 (MQ=60)

     CATCGCTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGgcggg                                                                                 <  SRR4302537.3243276/94‑6 (MQ=60)

        CGCTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGgcgggacg                                                                              <  SRR4302537.5069331/94‑9 (MQ=60)

        CGCTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGgcgggacg                                                                              >  SRR4302537.5824027/1‑86 (MQ=60)

        CGCTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGgcgggacg                                                                              >  SRR4302537.234893/1‑86 (MQ=60)

        CGCTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGgcgggacg                                                                              >  SRR4302537.4217039/1‑86 (MQ=60)

        CGCTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGGTATTGGCTCCATCAAAGACGGTGTCGgcgggacg                                                                              >  SRR4302537.218202/1‑86 (MQ=60)

         GCTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGgcgggacgc                                                                             >  SRR4302537.3035093/1‑85 (MQ=60)

         GCTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGgcgggacgc                                                                             >  SRR4302537.4634517/1‑85 (MQ=60)

          CTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGgcgggacgct                                                                            <  SRR4302537.6082384/94‑11 (MQ=60)

          CTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGgcgggacgct                                                                            <  SRR4302537.3505417/94‑11 (MQ=60)

          CTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGgcgggacgct                                                                            >  SRR4302537.3005535/1‑84 (MQ=60)

           TCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGgcgggacgctc                                                                           >  SRR4302537.4230805/1‑83 (MQ=60)

           TCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGgcgggacgctc                                                                           <  SRR4302537.56005/94‑12 (MQ=60)

            CTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGgcgggacgctcg                                                                          <  SRR4302537.1892243/94‑13 (MQ=60)

             TCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGgcgggacgctcgg                                                                         <  SRR4302537.5273542/94‑14 (MQ=60)

             TCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGCATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGgcgggacgctcgg                                                                         <  SRR4302537.4898631/94‑14 (MQ=60)

              CGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGgcgggacgctcggt                                                                        >  SRR4302537.3981905/1‑80 (MQ=60)

               GTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGgcgggacgctcggta                                                                       >  SRR4302537.15474/1‑79 (MQ=60)

               GTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGgcgggacgctcggta                                                                       >  SRR4302537.1412874/1‑79 (MQ=60)

                 CCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGgcgggacgctcggtagc                                                                     >  SRR4302537.5973368/1‑77 (MQ=60)

                  CTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGgcgggacgctcggtagcc                                                                    <  SRR4302537.3642463/94‑19 (MQ=60)

                  CTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGgcgggacgctcggtagcc                                                                    >  SRR4302537.1966841/1‑76 (MQ=60)

                    CGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTT                                                                  <  SRR4302537.352037/94‑1 (MQ=60)

                    CGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTT                                                                  >  SRR4302537.6480765/1‑94 (MQ=60)

                      TGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGC                                                                >  SRR4302537.3911076/1‑94 (MQ=60)

                      TGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGC                                                                >  SRR4302537.5693962/1‑94 (MQ=60)

                       GGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCC                                                               <  SRR4302537.5144548/94‑1 (MQ=60)

                       GGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCC                                                               <  SRR4302537.4320897/94‑1 (MQ=60)

                       GGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCC                                                               >  SRR4302537.2409740/1‑94 (MQ=60)

                        GCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCC                                                              <  SRR4302537.1197969/94‑1 (MQ=60)

                         CGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCT                                                             >  SRR4302537.1585484/1‑94 (MQ=60)

                          GCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTG                                                            >  SRR4302537.4321501/1‑94 (MQ=60)

                          GCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTG                                                            <  SRR4302537.3023378/94‑1 (MQ=60)

                           CTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGA                                                           >  SRR4302537.2630711/1‑94 (MQ=60)

                            TTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGAT                                                          <  SRR4302537.6240742/94‑1 (MQ=60)

                            TTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGAT                                                          <  SRR4302537.6084746/94‑1 (MQ=60)

                             TGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTGTTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATC                                                         <  SRR4302537.1698010/94‑1 (MQ=60)

                             TGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATC                                                         <  SRR4302537.6270473/94‑1 (MQ=60)

                             TGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATC                                                         <  SRR4302537.2309764/94‑1 (MQ=60)

                              GCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCA                                                        <  SRR4302537.2749899/94‑1 (MQ=60)

                              GCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCA                                                        <  SRR4302537.2462698/94‑1 (MQ=60)

                               CTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCAT                                                       >  SRR4302537.2615819/1‑94 (MQ=60)

                               CTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCAT                                                       <  SRR4302537.1761952/94‑1 (MQ=60)

                               CTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCAT                                                       <  SRR4302537.3247006/94‑1 (MQ=60)

                                 GTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGG                                                     <  SRR4302537.5703866/94‑1 (MQ=60)

                                 GTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGG                                                     <  SRR4302537.4994140/94‑1 (MQ=60)

                                 GTTGGATTAATGCAAGGAATGCCGCTGGATAAAATTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGG                                                     <  SRR4302537.516840/94‑1 (MQ=60)

                                  TTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGG                                                    >  SRR4302537.1579153/1‑94 (MQ=60)

                                  TTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGG                                                    <  SRR4302537.543805/94‑1 (MQ=60)

                                    GGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTT                                                  >  SRR4302537.129890/1‑94 (MQ=60)

                                     GATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTT                                                 <  SRR4302537.1663516/94‑1 (MQ=60)

                                     GATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTT                                                 >  SRR4302537.1151087/1‑94 (MQ=60)

                                     GATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTT                                                 <  SRR4302537.4917041/94‑1 (MQ=60)

                                       TTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTG                                               <  SRR4302537.2774361/94‑1 (MQ=60)

                                       TTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTG                                               <  SRR4302537.4612643/94‑1 (MQ=60)

                                         AATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGC                                             <  SRR4302537.988652/94‑1 (MQ=60)

                                         AATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGC                                             <  SRR4302537.3879762/94‑1 (MQ=60)

                                         AATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCACGGGTTTTGGC                                             >  SRR4302537.3500220/1‑94 (MQ=60)

                                          ATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCG                                            <  SRR4302537.144533/94‑1 (MQ=60)

                                            GCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCA                                          >  SRR4302537.4303330/1‑94 (MQ=60)

                                             CAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGTTCATGGGTTTTGGCGCAA                                         >  SRR4302537.3945472/1‑94 (MQ=60)

                                              AAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAAT                                        >  SRR4302537.4701392/1‑94 (MQ=60)

                                              AAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAAT                                        >  SRR4302537.1114893/1‑94 (MQ=60)

                                               AGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATG                                       >  SRR4302537.390741/1‑94 (MQ=60)

                                                 GAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCGTGGGATTTGGCGCAATGCT                                     >  SRR4302537.3965551/1‑94 (MQ=60)

                                                 GAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCT                                     <  SRR4302537.3006716/94‑1 (MQ=60)

                                                   ATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGG                                   <  SRR4302537.3593587/94‑1 (MQ=60)

                                                   ATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGG                                   <  SRR4302537.5500001/94‑1 (MQ=60)

                                                   ATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGG                                   >  SRR4302537.1391884/1‑94 (MQ=60)

                                                    TGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGG                                  <  SRR4302537.3552987/94‑1 (MQ=60)

                                                    TGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGG                                  <  SRR4302537.3563809/94‑1 (MQ=60)

                                                      CCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCA                                <  SRR4302537.5302407/94‑1 (MQ=60)

                                                       CGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAA                               <  SRR4302537.3618141/94‑1 (MQ=60)

                                                       CGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAA                               >  SRR4302537.2277613/1‑94 (MQ=60)

                                                        GCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAA                              <  SRR4302537.2197093/94‑1 (MQ=60)

                                                         CTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCACAA                             >  SRR4302537.2115932/1‑94 (MQ=60)

                                                         CTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAA                             >  SRR4302537.1188874/1‑94 (MQ=60)

                                                         CTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAA                             >  SRR4302537.1246128/1‑94 (MQ=60)

                                                          TGGATAAAGTTATTGGCTCCATCAAAGCCGGTTTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAAT                            <  SRR4302537.589361/94‑1 (MQ=60)

                                                          TGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAAT                            <  SRR4302537.5801511/94‑1 (MQ=60)

                                                          TGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAAT                            >  SRR4302537.1015140/1‑94 (MQ=60)

                                                           GGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATG                           >  SRR4302537.5559638/1‑94 (MQ=60)

                                                           GGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATG                           >  SRR4302537.3264152/1‑94 (MQ=60)

                                                           GGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATG                           <  SRR4302537.5899639/94‑1 (MQ=60)

                                                             ATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCT                         <  SRR4302537.2727321/94‑1 (MQ=60)

                                                             ATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCT                         >  SRR4302537.6032673/1‑94 (MQ=60)

                                                              TAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTG                        >  SRR4302537.5483841/1‑94 (MQ=60)

                                                              TAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTG                        >  SRR4302537.3153139/1‑94 (MQ=60)

                                                              TAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTG                        <  SRR4302537.3221891/94‑1 (MQ=60)

                                                              TAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTG                        <  SRR4302537.6078818/94‑1 (MQ=60)

                                                              TAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTG                        <  SRR4302537.787121/94‑1 (MQ=60)

                                                               AAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGG                       >  SRR4302537.4209581/1‑94 (MQ=60)

                                                                 AGTTATTGGCTCGATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTGTGGCGCAATGCTGGGCAAAATGCTGGCA                     <  SRR4302537.2975311/94‑1 (MQ=60)

                                                                 AGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCA                     <  SRR4302537.2470033/94‑1 (MQ=60)

                                                                  GTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAG                    <  SRR4302537.59192/94‑1 (MQ=60)

                                                                  GTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAG                    <  SRR4302537.2298204/94‑1 (MQ=60)

                                                                  GTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAG                    <  SRR4302537.2773812/94‑1 (MQ=60)

                                                                  GTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAG                    >  SRR4302537.5242857/1‑94 (MQ=60)

                                                                  GTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAG                    >  SRR4302537.3038694/1‑94 (MQ=60)

                                                                  ATTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAG                    <  SRR4302537.3290594/94‑1 (MQ=60)

                                                                  ATTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAG                    <  SRR4302537.3410610/94‑1 (MQ=60)

                                                                   TTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGA                   >  SRR4302537.4950576/1‑94 (MQ=60)

                                                                    TATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGAC                  <  SRR4302537.4888515/94‑1 (MQ=60)

                                                                     ATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACT                 <  SRR4302537.3025400/94‑1 (MQ=60)

                                                                      TTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTG                <  SRR4302537.1515739/94‑1 (MQ=60)

                                                                      TTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTG                <  SRR4302537.2377339/94‑1 (MQ=60)

                                                                        GGCTCCATCAAAGCCGGGGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCG              >  SRR4302537.6160713/1‑94 (MQ=60)

                                                                          CTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGT            >  SRR4302537.2548060/1‑94 (MQ=60)

                                                                          CTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGT            >  SRR4302537.2329411/1‑94 (MQ=60)

                                                                          CTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGG            >  SRR4302537.6054295/1‑94 (MQ=60)

                                                                           TCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTG           <  SRR4302537.2837589/94‑1 (MQ=60)

                                                                           TCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTG           <  SRR4302537.1149842/94‑1 (MQ=60)

                                                                           TCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTG           <  SRR4302537.4096381/94‑1 (MQ=60)

                                                                           TCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTG           >  SRR4302537.2447635/1‑94 (MQ=60)

                                                                           TCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTG           <  SRR4302537.217325/94‑1 (MQ=60)

                                                                           TCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTG           <  SRR4302537.4438977/94‑1 (MQ=60)

                                                                             CATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGC         <  SRR4302537.5864048/94‑1 (MQ=60)

                                                                             CATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGC         <  SRR4302537.5234137/94‑1 (MQ=60)

                                                                             CATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGC         <  SRR4302537.4591251/94‑1 (MQ=60)

                                                                               TCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGC       <  SRR4302537.14008/94‑1 (MQ=60)

                                                                                CAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGGTCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGGGGCGGA      >  SRR4302537.2246393/1‑94 (MQ=60)

                                                                                CAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCCTGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGCA      >  SRR4302537.790588/1‑94 (MQ=60)

                                                                                CAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGCA      <  SRR4302537.1892909/94‑1 (MQ=60)

                                                                                 AAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGCAC     >  SRR4302537.1476116/1‑94 (MQ=60)

                                                                                 AAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGCAC     >  SRR4302537.483391/1‑94 (MQ=60)

                                                                                 AAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGCAC     <  SRR4302537.5327017/94‑1 (MQ=60)

                                                                                  AAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGCACA    <  SRR4302537.5659554/94‑1 (MQ=60)

                                                                                  AAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGCACA    <  SRR4302537.4683192/94‑1 (MQ=60)

                                                                                    GCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGCACAAC  <  SRR4302537.2227009/94‑1 (MQ=60)

GGCTTCATCGCTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑‑CGGACG‑TCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGCACAAC  >  NC_000913/3544264‑3544438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`