Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,707,653 |
A→G |
L162P (CTG→CCG) |
yhjW ← |
hypothetical protein |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,707,653 | 0 | A | G | 100.0%
| 987.2
/ NA
| 283 | L162P (CTG→CCG) | yhjW | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (129/154); total (129/154) |
Only 100 of 291 total aligned reads displayed.
TGGATATCCAGCAAACGAATCGGTGCCC‑AAA‑CCATAATACCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCAGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAGAGAATAAAGTTC > NC_000913/3707563‑3707742
|
tgGATATCCAGCAAACGAATCGGTGCCC‑AAA‑CCATAATACCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGATCGCGGt > 1:3998578/1‑93 (MQ=255)
tatCCAGCAAACGAATCGGTGGCC‑AAA‑CCATAATACCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTc > 1:5749040/1‑93 (MQ=255)
tatCCAGCAAACGAATCGGTGCCC‑AAA‑CCATAATCCCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTc < 1:4359055/93‑1 (MQ=255)
tCCAGCAAACGAATCGGTGCCC‑AAA‑CCATAATACCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCgg > 2:277631/1‑93 (MQ=255)
tCCAGCAAACGAATCGGTGCCC‑AAA‑CCATAATACCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGACCTGGGGTTCTCGGTTGTCgg > 2:564168/1‑93 (MQ=255)
cccAGCAACCGAAGCGGTGCCA‑AAC‑CCATAATCCCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCgg < 2:1479987/92‑1 (MQ=255)
caacAAACGAATCGTGCCCC‑AAA‑CCATAAGGCCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAg < 1:6431747/90‑1 (MQ=255)
agaaaacaaacCGGTGCCC‑AAA‑CCAAAACCCCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGc < 2:6213026/90‑1 (MQ=255)
aGCAAACGAATCGGTCCCC‑AAC‑CAATAATCCCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGc < 1:4763116/93‑1 (MQ=255)
gCAACCGAATCGTGGCCC‑AAA‑CCATAATACCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCa < 2:3254805/93‑1 (MQ=255)
gCAAACGAATCGGTGCCC‑AAA‑CCATAATTCCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCa < 1:6215950/93‑1 (MQ=255)
gCAAACGAATCGGTGCCC‑AAA‑CCATAATACCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCa > 2:5203703/1‑93 (MQ=255)
cAACCGAATCGTTGCCC‑AAA‑CCATAATCCCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCaa < 2:1534226/93‑1 (MQ=255)
aaaCGAATCGGTGCCC‑AAA‑CCATAATACCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAg > 2:2417646/1‑93 (MQ=255)
aaaCGAATCGGGGCCC‑AAA‑CCATAATCCCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAg < 2:3200955/93‑1 (MQ=255)
aaaCGAAGCGG‑GCCC‑AAACCCATATTACCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAg < 1:3714816/93‑1 (MQ=255)
aCGAATCGGTGCCC‑AAA‑CCATAATACCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAggg > 1:2227666/1‑92 (MQ=255)
aCGAATCGGTGCCC‑AAA‑CCATAATACCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGgt > 2:799238/1‑93 (MQ=255)
aCGAATCGGTGCCC‑AAA‑CCATAATACCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGgt > 1:238573/1‑93 (MQ=255)
caaaTCGGTCCCA‑AAA‑CCATAATCCCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGgtg < 2:3513122/91‑1 (MQ=255)
cGAAGCGGTGCCC‑AAC‑CCATAATACCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGgtg < 1:3029336/93‑1 (MQ=255)
gAATCGGTGCCC‑AAA‑CCATAATACCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGgtgt > 2:4592845/1‑93 (MQ=255)
gAATCGGTGCCA‑AAA‑CCATAATACCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGgtgt < 1:5947605/93‑1 (MQ=255)
aaTCGGTGCCC‑AAA‑CCATAATACCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTa > 1:5899849/1‑93 (MQ=255)
aatggTGCCCAAAA‑CCATAATCCCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTa < 1:917143/90‑1 (MQ=255)
aTCGGTGCCC‑AAA‑CCATAATACCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAg > 2:5043964/1‑93 (MQ=255)
tCGGTCCCC‑AAC‑CAATAATCCCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGc < 2:2318457/93‑1 (MQ=255)
gCCC‑AAA‑CCATAATACCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAg > 2:5733557/1‑93 (MQ=255)
ccc‑AAG‑CAATAATCCCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGc < 2:2549310/93‑1 (MQ=255)
ccc‑AAA‑CCATAATCCCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGc < 1:1459729/93‑1 (MQ=255)
c‑AAA‑CGATAATCCCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCgg < 2:6062715/93‑1 (MQ=255)
aaa‑CCATAATACCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGt > 2:5414165/1‑93 (MQ=255)
aa‑CCATAATACCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCACGGTGTCGCGACAGCGGtt > 1:2619136/1‑93 (MQ=255)
aa‑CCATAATACCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGtt > 2:1040373/1‑93 (MQ=255)
a‑CCATAATCCCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTa < 1:5067437/93‑1 (MQ=255)
a‑CCATAATACCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTa > 2:3853084/1‑93 (MQ=255)
a‑CCATAATACCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTa > 2:4328737/1‑93 (MQ=255)
a‑CCACAATCCCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTa < 1:1560419/93‑1 (MQ=255)
ataataCCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTc > 2:294821/1‑93 (MQ=255)
ataataCCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTc > 2:37319/1‑93 (MQ=255)
taataCCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTcc > 2:2631151/1‑93 (MQ=255)
actgcccGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCa < 2:2185543/89‑1 (MQ=255)
aacccccGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCa < 1:3644363/89‑1 (MQ=255)
atccccGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAg < 2:4087033/90‑1 (MQ=255)
ataCCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAg < 2:544599/93‑1 (MQ=255)
ccGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAgataa > 2:662706/1‑93 (MQ=255)
cGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAgataag > 2:5586273/1‑93 (MQ=255)
cGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAgataag > 1:4228918/1‑93 (MQ=255)
gCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTTTAGCGACAGCGGTTATTCCAgataagg > 2:6394964/1‑93 (MQ=255)
ccAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAgataagga < 1:73378/93‑1 (MQ=255)
cAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAgataaggat < 1:2840588/93‑1 (MQ=255)
cAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAgataaggat > 2:1734376/1‑93 (MQ=255)
cAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAgataaggat < 1:5239330/93‑1 (MQ=255)
aGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAgataaggata > 1:1943514/1‑93 (MQ=255)
tACGACGACCGCCAGGCTGAGAATACGCTGCCCTGGGGTTCGCGGGTGTCGGAGCAAGGTGTAGCGACAGCCGGTATTCCAgataaggataag > 2:4251642/1‑93 (MQ=255)
acgacgACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAaga < 1:1045846/93‑1 (MQ=255)
acgacgACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAaga < 1:2707872/93‑1 (MQ=255)
acgacgACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAaga > 2:5944835/1‑93 (MQ=255)
acgacgACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAaga > 1:2983627/1‑93 (MQ=255)
cgacgaCCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAagag < 2:5682478/93‑1 (MQ=255)
cgacgaCCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAagag > 1:1076090/1‑93 (MQ=255)
cgacgaCCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAagag < 1:5486547/93‑1 (MQ=255)
acgacCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGc > 1:5362020/1‑93 (MQ=255)
gacCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCaa < 1:3318606/93‑1 (MQ=255)
gacCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCaa < 2:3035973/93‑1 (MQ=255)
acCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAAt < 2:5808590/93‑1 (MQ=255)
acCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAAt < 2:4788436/93‑1 (MQ=255)
acCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAAt < 1:4463537/93‑1 (MQ=255)
acCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAAt > 1:5707135/1‑93 (MQ=255)
acCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAAt < 2:1366232/93‑1 (MQ=255)
acCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGGTATTCCAGATAAGGATAAGAGGCAAt > 1:2149758/1‑93 (MQ=255)
cGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGc > 1:4036377/1‑93 (MQ=255)
gCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCa < 1:1730158/93‑1 (MQ=255)
ccAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCAc < 1:4615167/93‑1 (MQ=255)
cAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACt < 1:1837971/93‑1 (MQ=255)
cAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACt > 1:3485557/1‑93 (MQ=255)
cAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACt > 1:1619889/1‑93 (MQ=255)
ggCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTaa < 1:3428159/93‑1 (MQ=255)
ggCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTaa > 1:6132628/1‑93 (MQ=255)
ggCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTaa < 1:4852819/93‑1 (MQ=255)
ggCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTaa < 2:3389564/93‑1 (MQ=255)
cTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACg < 2:6017662/93‑1 (MQ=255)
cTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACg > 1:1273078/1‑93 (MQ=255)
tGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACgg > 2:1868832/1‑93 (MQ=255)
tGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACgg > 1:3264493/1‑93 (MQ=255)
gCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGc > 2:4019641/1‑93 (MQ=255)
gCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGc > 1:4581263/1‑93 (MQ=255)
gAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGa < 2:1824938/93‑1 (MQ=255)
aaTACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGAt < 1:2315761/93‑1 (MQ=255)
tACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTa > 2:1611250/1‑93 (MQ=255)
gCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCaga < 2:2500256/93‑1 (MQ=255)
cccTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCGATGCACTAACGGCGATTAACCagag < 2:4347954/93‑1 (MQ=255)
cccTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCagag < 1:4181716/93‑1 (MQ=255)
ccTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAgaga > 2:6096426/1‑93 (MQ=255)
tGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAGAGAAt < 1:558790/93‑1 (MQ=255)
ggggTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAGAGAATa > 2:5155032/1‑93 (MQ=255)
ggggTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAGAGAATa < 2:1262470/93‑1 (MQ=255)
ggTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAGAGAATaaa < 2:5328005/93‑1 (MQ=255)
ttCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAGAGAATAAAGt < 1:846816/93‑1 (MQ=255)
tCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAGAGAATAAAGtt < 1:4976959/93‑1 (MQ=255)
|
TGGATATCCAGCAAACGAATCGGTGCCC‑AAA‑CCATAATACCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCAGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAGAGAATAAAGTTC > NC_000913/3707563‑3707742
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCTGGATATCCAGCAAACGAATCGGTGCCC‑AAA‑CCATAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCAGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAGAGAATAAAGTTCAGAC > NC_000913/3707561‑3707746
|
GCTGGATATCCAGCAAACGAATCGGTGCCC‑AAA‑CCATAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGG > SRR4302537.5025488/1‑94 (MQ=60)
CTGGATATCCAGCAAACGAATCGGTGCCC‑AAA‑CCATAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGATCGCGGT > SRR4302537.4026574/1‑94 (MQ=60)
GGATATCCAGCAAACGAATCGGTGCCC‑AAA‑CCATAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTG > SRR4302537.4159733/1‑94 (MQ=60)
gattcCCAGCAACCGAATCGTTGCCC‑AAC‑CCATAATCCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGT < SRR4302537.5293192/89‑1 (MQ=60)
ATATCCAGCAAACGAATCGGTGGCC‑AAA‑CCATAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTC > SRR4302537.5788416/1‑94 (MQ=60)
ATATCCAGCAAACGAATCGGTGCCC‑AAA‑CCATAATCCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTC < SRR4302537.2793005/94‑1 (MQ=60)
ATATCCAGCAAACGAATCGGTGCCC‑AAA‑CCATAATACCCGCCA‑ATACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTC > SRR4302537.3484529/1‑94 (MQ=60)
TATCCAGCAAACGAATCGGTGCCC‑AAA‑CCATAATCCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCG < SRR4302537.4389221/94‑1 (MQ=60)
TCCAGCAAACGAATCGGTGCCC‑AAC‑CCATAATCCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGA < SRR4302537.4222341/94‑1 (MQ=60)
caagaAAACGAATCGGTGCCA‑AAC‑CCATAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAG < SRR4302537.4163304/89‑1 (MQ=60)
CCAGCAAACGAATCGGTGCCC‑AAA‑CCATAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAG > SRR4302537.2186596/1‑94 (MQ=60)
CAACAAACGAATCGTGCCCC‑AAA‑CCATAAGGCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGC < SRR4302537.6475434/94‑1 (MQ=60)
AGCAAACGAATCGGTCCCC‑AAC‑CAATAATCCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCA < SRR4302537.4796010/94‑1 (MQ=60)
GCAAACGAATCGGTGCCC‑AAA‑CCATAATTCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAA < SRR4302537.6258749/94‑1 (MQ=60)
gaacggaagcggccCCC‑AAA‑CCATAATCCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAG < SRR4302537.4222457/80‑1 (MQ=60)
CAAACGAATCGGTGCCC‑AAA‑CCATAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAG > SRR4302537.5946185/1‑94 (MQ=60)
AAAACGAATCGGTCCCC‑AAA‑CCATAATCCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAG < SRR4302537.2114698/94‑1 (MQ=60)
AAACGAATCGGCCCCC‑AAA‑CCATAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGG < SRR4302537.3788259/94‑1 (MQ=60)
AAACGAAGCGG‑GCCC‑AAACCCATATTACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGG < SRR4302537.3740928/94‑1 (MQ=60)
ACCGAATCGGTGCCA‑AAA‑CCATAATCCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGT < SRR4302537.547988/94‑1 (MQ=60)
AACGAATCGGTGCCC‑AAA‑CCATAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGT > SRR4302537.240261/1‑94 (MQ=60)
AACGAATCGGTGCCC‑AAA‑CCATAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGG > SRR4302537.2243374/1‑94 (MQ=60)
aacaaatgggggccaAAA‑CCATAATCCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGT < SRR4302537.3618857/79‑1 (MQ=60)
acaaagcgttgccaAAA‑CCAAAATCCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTG < SRR4302537.29368/80‑1 (MQ=60)
CGAATCGGTGCCC‑AAA‑CCATAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGT > SRR4302537.5594250/1‑94 (MQ=60)
CGAAGCGGTGCCC‑AAC‑CCATAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGT < SRR4302537.3050455/94‑1 (MQ=60)
GAATCGGTGCCC‑AAA‑CCATAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTA > SRR4302537.5940333/1‑94 (MQ=60)
GAATCGGTGCCA‑AAA‑CCATAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTA < SRR4302537.5988428/94‑1 (MQ=60)
AATCGGTGCCC‑AAA‑CCATAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAG > SRR4302537.5368322/1‑94 (MQ=60)
AAT‑GGTGCCCAAAA‑CCATAATCCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAG < SRR4302537.923477/94‑1 (MQ=60)
gattcggtccccaagcaataaacCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTA < SRR4302537.4063991/71‑1 (MQ=60)
ATGGGTGCCC‑AAA‑CCATAATCCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGC < SRR4302537.1470543/94‑1 (MQ=60)
acgcgcCCC‑AAA‑CAATAACACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCG < SRR4302537.3431497/88‑1 (MQ=60)
TCGGTGCCC‑AAA‑CCATAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCG < SRR4302537.1833683/94‑1 (MQ=60)
acgggtcccaaaccaatacACCCGCCAGGTACGACGCCCG‑CAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCG < SRR4302537.2007607/75‑1 (MQ=60)
ggcCCC‑AAA‑CCAAAATCCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACA < SRR4302537.1554598/91‑1 (MQ=60)
GTGCCC‑AAA‑CCATAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACA > SRR4302537.2707931/1‑94 (MQ=60)
TGCCC‑AAA‑CCATAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAG > SRR4302537.6270583/1‑94 (MQ=60)
TGCCA‑AAA‑CCATAATCCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAG < SRR4302537.5049089/94‑1 (MQ=60)
GCCC‑AAC‑CCATAATCCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGTTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGC < SRR4302537.3489794/94‑1 (MQ=60)
CCC‑AAA‑CCATAATCCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCG < SRR4302537.5418209/94‑1 (MQ=60)
CCC‑AAA‑CCATAATCCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCG < SRR4302537.1469887/94‑1 (MQ=60)
CC‑AAA‑CCATAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGG > SRR4302537.3258593/1‑94 (MQ=60)
CC‑AAA‑CCATAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGG > SRR4302537.1057860/1‑94 (MQ=60)
C‑AAA‑CCATAATCCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGT < SRR4302537.4659985/94‑1 (MQ=60)
C‑AAA‑CCATAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGT > SRR4302537.2308041/1‑94 (MQ=60)
AAA‑CCATAATCCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTT < SRR4302537.2907182/94‑1 (MQ=60)
AAA‑CCATAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCACGGTGTCGCGACAGCGGTT > SRR4302537.2637444/1‑94 (MQ=60)
AA‑CCATAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCACTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTA < SRR4302537.3654856/94‑1 (MQ=60)
A‑CCATAATCCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTAT < SRR4302537.2686245/94‑1 (MQ=60)
A‑CCATAATCCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTAT < SRR4302537.5102320/94‑1 (MQ=60)
A‑CCATAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTAT > SRR4302537.5690112/1‑94 (MQ=60)
A‑CCACAATCCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTAT < SRR4302537.1571307/94‑1 (MQ=60)
A‑CCAAAATCCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTAT < SRR4302537.4453204/94‑1 (MQ=60)
CCATAATCCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATT < SRR4302537.5056798/94‑1 (MQ=60)
CCATAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATT > SRR4302537.175627/1‑94 (MQ=60)
CCAAAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATT < SRR4302537.1587132/94‑1 (MQ=60)
ATAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCC > SRR4302537.5990610/1‑94 (MQ=60)
aaatcCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCA < SRR4302537.3337947/89‑1 (MQ=60)
TAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCA < SRR4302537.2729224/94‑1 (MQ=60)
TAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCA > SRR4302537.216959/1‑94 (MQ=60)
actcCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAG < SRR4302537.3837524/90‑1 (MQ=60)
aaccCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAG < SRR4302537.3670025/90‑1 (MQ=60)
AATCCCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAG < SRR4302537.4033073/94‑1 (MQ=60)
TACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGAT > SRR4302537.3405684/1‑94 (MQ=60)
ACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATA > SRR4302537.4620001/1‑94 (MQ=60)
CCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAA > SRR4302537.5915237/1‑94 (MQ=60)
CCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAA < SRR4302537.815562/94‑1 (MQ=60)
CCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAG > SRR4302537.4258362/1‑94 (MQ=60)
CGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGG < SRR4302537.301535/94‑1 (MQ=60)
GCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGCTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGA > SRR4302537.6165270/1‑94 (MQ=60)
CCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGAT < SRR4302537.5762630/94‑1 (MQ=60)
CCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGAT < SRR4302537.73918/94‑1 (MQ=60)
CCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGAT < SRR4302537.948649/94‑1 (MQ=60)
CA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGGCAGCGGTTATTCCAGATAAGGATA > SRR4302537.1268399/1‑94 (MQ=60)
CA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATA < SRR4302537.2860468/94‑1 (MQ=60)
CA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATA > SRR4302537.2929379/1‑94 (MQ=60)
CA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATA < SRR4302537.5275381/94‑1 (MQ=60)
CA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATA > SRR4302537.4521195/1‑94 (MQ=60)
CA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATA > SRR4302537.1957026/1‑94 (MQ=60)
CA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATA < SRR4302537.1901804/94‑1 (MQ=60)
A‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAA > SRR4302537.238856/1‑94 (MQ=60)
A‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAA < SRR4302537.2070070/94‑1 (MQ=60)
GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAG > SRR4302537.1442319/1‑94 (MQ=60)
TACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGA < SRR4302537.4299289/94‑1 (MQ=60)
TACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGA > SRR4302537.3004481/1‑94 (MQ=60)
TACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGA < SRR4302537.5770797/94‑1 (MQ=60)
ACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAG > SRR4302537.592555/1‑94 (MQ=60)
ACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAG > SRR4302537.1083504/1‑94 (MQ=60)
ACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAG < SRR4302537.2726782/94‑1 (MQ=60)
ACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAG < SRR4302537.1053064/94‑1 (MQ=60)
CGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGG < SRR4302537.5523998/94‑1 (MQ=60)
CGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGG < SRR4302537.6204277/94‑1 (MQ=60)
CGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGG > SRR4302537.6496964/1‑94 (MQ=60)
GACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGC > SRR4302537.5398729/1‑94 (MQ=60)
ACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCA < SRR4302537.1740419/94‑1 (MQ=60)
CGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAA > SRR4302537.1719347/1‑94 (MQ=60)
GACCGCGAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAAT < SRR4302537.1868558/94‑1 (MQ=60)
GACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAAT > SRR4302537.2266229/1‑94 (MQ=60)
GACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAAT > SRR4302537.5746190/1‑94 (MQ=60)
GACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAAT < SRR4302537.3342083/94‑1 (MQ=60)
GACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGGTATTCCAGATAAGGATAAGAGGCAAT > SRR4302537.2164910/1‑94 (MQ=60)
ACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATG < SRR4302537.5252451/94‑1 (MQ=60)
ACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATG > SRR4302537.5644025/1‑94 (MQ=60)
ACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATG < SRR4302537.4494409/94‑1 (MQ=60)
CCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGC > SRR4302537.4064625/1‑94 (MQ=60)
GCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCAC < SRR4302537.1742233/94‑1 (MQ=60)
GCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCAC < SRR4302537.5319632/94‑1 (MQ=60)
CCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACT > SRR4302537.3510210/1‑94 (MQ=60)
CCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACT > SRR4302537.3383149/1‑94 (MQ=60)
CCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACT > SRR4302537.1631210/1‑94 (MQ=60)
CCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACT < SRR4302537.4647129/94‑1 (MQ=60)
CCAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACT < SRR4302537.3286947/94‑1 (MQ=60)
CAGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTA < SRR4302537.1850763/94‑1 (MQ=60)
AGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAA < SRR4302537.927813/94‑1 (MQ=60)
AGGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAA > SRR4302537.6174784/1‑94 (MQ=60)
GGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAAC < SRR4302537.3452423/94‑1 (MQ=60)
GGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAAC < SRR4302537.4075398/94‑1 (MQ=60)
GGCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAAC < SRR4302537.4886297/94‑1 (MQ=60)
GCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACG > SRR4302537.1281927/1‑94 (MQ=60)
GCTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACG < SRR4302537.5584653/94‑1 (MQ=60)
CTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGG > SRR4302537.4591996/1‑94 (MQ=60)
CTGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGG > SRR4302537.3287519/1‑94 (MQ=60)
TGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGC > SRR4302537.4612954/1‑94 (MQ=60)
TGCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGC < SRR4302537.4743817/94‑1 (MQ=60)
GCGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCG < SRR4302537.594680/94‑1 (MQ=60)
CGAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTCTTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGA > SRR4302537.5708668/1‑94 (MQ=60)
GAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGAT < SRR4302537.866838/94‑1 (MQ=60)
GAATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGAT > SRR4302537.2632172/1‑94 (MQ=60)
AATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATT < SRR4302537.4481872/94‑1 (MQ=60)
AATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATT < SRR4302537.2332108/94‑1 (MQ=60)
ATACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTA > SRR4302537.6493459/1‑94 (MQ=60)
TACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAA < SRR4302537.421917/94‑1 (MQ=60)
TACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAA < SRR4302537.3732429/94‑1 (MQ=60)
TACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAA < SRR4302537.4831049/94‑1 (MQ=60)
ACGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAAC < SRR4302537.3044000/94‑1 (MQ=60)
CGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACC < SRR4302537.4323229/94‑1 (MQ=60)
CGCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACC > SRR4302537.5268471/1‑94 (MQ=60)
GCTGCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCA < SRR4302537.1442302/94‑1 (MQ=60)
GCCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAGAG > SRR4302537.1592486/1‑94 (MQ=60)
CCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAGAGA < SRR4302537.4210909/94‑1 (MQ=60)
CCCTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAGAGA > SRR4302537.836768/1‑94 (MQ=60)
CTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAGAGAAT < SRR4302537.3295506/94‑1 (MQ=60)
CTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAGAGAAT > SRR4302537.1182448/1‑94 (MQ=60)
CTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAGAGAAT < SRR4302537.4829309/94‑1 (MQ=60)
CTGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAGAGAAT > SRR4302537.6444419/1‑94 (MQ=60)
TGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCGGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAGAGAATA > SRR4302537.2506312/1‑94 (MQ=60)
TGGGGTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAGAGAATA < SRR4302537.562637/94‑1 (MQ=60)
GGGGTTCGCGGTTGTCGGAGCAAGGCGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAGAGAATAA < SRR4302537.4622751/94‑1 (MQ=60)
GTTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAGAGAATAAAGT < SRR4302537.4888625/94‑1 (MQ=60)
TTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAGAGAATAAAGTT < SRR4302537.852616/94‑1 (MQ=60)
TTCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAGAGAATAAAGTT > SRR4302537.857357/1‑94 (MQ=60)
TCGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAGAGAATAAAGTTC < SRR4302537.5011261/94‑1 (MQ=60)
CGCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGACGATTAACCAGAGAATAAAGTTCA > SRR4302537.2132250/1‑94 (MQ=60)
GCGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAGAGAATAAAGTTCAG > SRR4302537.5505398/1‑94 (MQ=60)
CGGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAGAGAATAAAGTTCAGA < SRR4302537.85254/94‑1 (MQ=60)
GGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAGAGAATAAAGTTCAGAC > SRR4302537.3063057/1‑94 (MQ=60)
GGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAGAGAATAAAGTTCAGAC > SRR4302537.2772060/1‑94 (MQ=60)
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GCTGGATATCCAGCAAACGAATCGGTGCCC‑AAA‑CCATAATACCCGCCA‑GTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCAGTTGTCGGAGCAAGGTGTAGCGACAGCGGTTATTCCAGATAAGGATAAGAGGCAATGCACTAACGGCGATTAACCAGAGAATAAAGTTCAGAC > NC_000913/3707561‑3707746
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |