Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,778,690 |
A→G |
intergenic (+46/‑152) |
lldD → / → yibK |
L‑lactate dehydrogenase/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,778,690 | 0 | A | G | 95.8%
| 582.8
/ 11.9
| 189 | intergenic (+46/‑152) | lldD/yibK | L‑lactate dehydrogenase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (2/6); new base G (66/115); total (68/121) |
| Fisher's exact test for biased strand distribution p-value = 7.13e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.21e-01 |
Only 100 of 215 total aligned reads displayed.
TTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGA > NC_000913/3778600‑3778779
|
cTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTc < 1:4545472/93‑1 (MQ=255)
cTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTc < 2:5325420/93‑1 (MQ=255)
cTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTc < 2:495968/93‑1 (MQ=255)
cTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCCCAGGGCGAGGGCGCCGttg > 2:3299078/1‑92 (MQ=38)
gCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGgcgc < 2:5005194/93‑1 (MQ=255)
tGGCTCCCATGGCGAAAGGGAATGGGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCtgta < 1:4716368/93‑1 (MQ=255)
tGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCGCCCTCACCCCAACCCTCTCCCTCCCGGAGGGGGGGGCGATCGGCGCtgca > 1:5041674/1‑91 (MQ=255)
tGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCtgta < 2:703005/93‑1 (MQ=255)
tGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCtgta > 1:2026040/1‑93 (MQ=255)
tGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCACGGAGAGGGGGGCGTTCGGCGCtgta > 2:1827023/1‑93 (MQ=255)
ggCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCCCCCTAACCCTCTCCCGCAGGGAGAGGGGGCCGTTCGGCGCtgtat < 1:4293169/93‑1 (MQ=255)
cTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCtgtatgt < 1:4884676/93‑1 (MQ=255)
tCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGGCGTTCGGCGCtgtatgta > 2:3963909/1‑93 (MQ=255)
cATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTc < 1:6005795/93‑1 (MQ=255)
cATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCACCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTc > 1:1348362/1‑93 (MQ=255)
aTGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTcc < 1:2904214/93‑1 (MQ=255)
aTGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCCACCCCCAACCTCTCCCTCAGGGAGAGGGGGGCGGTCGGCGCTGTATGTACTcc > 2:2608297/1‑93 (MQ=255)
tGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTccc < 2:3444643/93‑1 (MQ=255)
ggCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCt < 2:5842569/93‑1 (MQ=255)
gCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTc < 1:346749/93‑1 (MQ=255)
gCGAAAGGGAAGGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTc < 2:3786901/93‑1 (MQ=255)
gAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCAc < 1:2787371/93‑1 (MQ=255)
aGGGAATGCGGCATAGTCGTTTGCGCCCCCTCCCCCTAACCCTCTCCCTCAGGGAGAGGGGGGCGCTCAGGGCGGTATGGACTCCCTCActct > 2:5125406/1‑93 (MQ=37)
aGGGAATGAGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCActct < 2:5495039/93‑1 (MQ=255)
aaTGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGaaa < 2:5186390/93‑1 (MQ=255)
aaTGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGaaa < 2:3927802/93‑1 (MQ=255)
aaTGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGaaa < 1:800774/93‑1 (MQ=255)
cgtcATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCTCTCTGAAACGac < 1:5677547/90‑1 (MQ=255)
cGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGGCGTTCGGCGCGGTATGTACTCCCTCACTCTTAAACGaa > 2:6345890/1‑92 (MQ=38)
ggCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGaca < 2:2794019/93‑1 (MQ=255)
ggCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGaca < 2:129128/93‑1 (MQ=255)
gCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGacac < 1:300736/93‑1 (MQ=255)
gCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGacac < 2:1695317/93‑1 (MQ=255)
gCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGacac > 1:985016/1‑93 (MQ=255)
cATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACAcc < 1:1124678/93‑1 (MQ=255)
aTAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCg < 1:3063481/93‑1 (MQ=255)
tAGTCGTTTGCGCCCCCCCCCCCCAACCCTCTCCCTCAAGGAGAGGGGGGCGGTCGGCGCTGTATGTATTTCCTCACTCTGAAACGACACCGc > 2:4053668/1‑93 (MQ=255)
aGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCa < 2:2872727/93‑1 (MQ=255)
tCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCAct > 1:3001116/1‑93 (MQ=255)
cGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCActc < 1:3498699/93‑1 (MQ=255)
tttGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCtt > 1:4385974/1‑93 (MQ=255)
ttGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCttt < 2:811289/93‑1 (MQ=255)
ttGCCCCCCCTCCCCCTACCCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCttt < 2:4526071/93‑1 (MQ=255)
tGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCtttt < 2:3725370/93‑1 (MQ=255)
tGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCtttt > 2:5419398/1‑93 (MQ=255)
tGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCtttt < 1:713822/93‑1 (MQ=255)
tGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCtttt < 1:810117/93‑1 (MQ=255)
gcgcCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCttttt < 2:1495734/93‑1 (MQ=255)
cgcCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCAATCtttttt < 1:1024767/93‑1 (MQ=255)
cccccTCACCCTAACCCTCTCCCTCCGGGAGAGGGGGCCGGTCGGCGCTGTATGTACTTCCTCACTCTTAAACGACCACGCACTCTTTTTTtc > 2:5720136/1‑93 (MQ=37)
cccccTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGGCGGTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACAACGCACTCtttttttt > 2:114937/1‑92 (MQ=38)
cccccTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTtc < 1:1570217/93‑1 (MQ=255)
cccccTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCACACTCTTTTTTtc < 2:3524426/93‑1 (MQ=255)
cccccTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTtc < 2:837948/93‑1 (MQ=255)
ccccTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTtct < 1:6149331/93‑1 (MQ=255)
cccTCACCCTAACCCTCTCCCTCAGGGGGAGGGGGCCGTTCGGCGCTGTATGTACTTCCTCCCTCTGAAACGAAACCGCACCCTTTTTTtctc > 2:4214132/1‑93 (MQ=37)
cccTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGGCGTTCGGCGCTGTATGTACTCCCTCCCTCTTAAAACACACCCCACTCTTTTTTtctc > 2:1882667/1‑93 (MQ=37)
ccTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTcc > 1:607328/1‑93 (MQ=255)
ccTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGGTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTcc > 2:4900084/1‑93 (MQ=255)
tCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCt < 2:6373581/93‑1 (MQ=255)
tCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCt > 1:5723331/1‑93 (MQ=255)
cACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTc > 1:5389418/1‑93 (MQ=255)
ccTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGcc > 1:1362929/1‑93 (MQ=255)
ccTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGcc > 2:229163/1‑93 (MQ=255)
ccTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGcc > 2:5474659/1‑93 (MQ=255)
cTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGccc > 2:3616740/1‑93 (MQ=255)
tAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGcccc < 2:4149187/93‑1 (MQ=255)
tAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGcccc > 1:3288570/1‑93 (MQ=255)
aCCCTCTCCCTCAGGGAGAGGGGGCCGGTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCGCCTc > 2:1213847/1‑93 (MQ=255)
cccTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTcc > 1:3023066/1‑93 (MQ=255)
cccTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTcc > 2:2361075/1‑93 (MQ=255)
cccTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTcc > 1:515934/1‑93 (MQ=255)
cccTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTcc > 1:1146063/1‑93 (MQ=255)
ctctCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCgg > 1:2551774/1‑93 (MQ=255)
ctctCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCgg > 1:705618/1‑93 (MQ=255)
tctcCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCggg < 1:4171664/93‑1 (MQ=255)
tcCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGga < 1:3674874/93‑1 (MQ=255)
cccTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGgag > 1:2282476/1‑93 (MQ=255)
cTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGagag > 1:4972285/1‑93 (MQ=255)
cTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGagag > 2:289097/1‑93 (MQ=255)
cTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGagag < 2:2969302/93‑1 (MQ=255)
cTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGagag < 1:550455/93‑1 (MQ=255)
tCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAgg < 1:2422404/93‑1 (MQ=255)
tCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAgg < 2:3890499/93‑1 (MQ=255)
cgggAGAGGGGGCCGTTCGACGCTGTCTGTACTCCCACACTCTGAAAAGCCACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGc < 1:6474232/92‑1 (MQ=255)
aGGGAGAGGGGGCCGTTCGGCGCTGTATGTCCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGc < 1:2318813/93‑1 (MQ=255)
aGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGc > 1:1767276/1‑93 (MQ=255)
aGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGc > 2:5870049/1‑93 (MQ=255)
ggAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCg < 2:6440970/93‑1 (MQ=255)
gagaGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCgg < 1:5271983/93‑1 (MQ=255)
agagGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCggg < 2:2135172/93‑1 (MQ=255)
agagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCTCTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCggg < 1:2182479/93‑1 (MQ=255)
gagGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCgggg < 2:1363625/93‑1 (MQ=255)
gagGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCgggg < 1:6302196/93‑1 (MQ=255)
gagGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCgggg > 2:1752069/1‑93 (MQ=255)
gagGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCgggg > 1:5617611/1‑93 (MQ=255)
gagGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCgggg < 1:5119465/93‑1 (MQ=255)
gagGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCgggg < 2:4554833/93‑1 (MQ=255)
agGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt < 1:3602137/93‑1 (MQ=255)
ggggGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTg > 2:3713755/1‑93 (MQ=255)
|
TTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGA > NC_000913/3778600‑3778779
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGG > NC_000913/3778598‑3778782
|
GGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGC < SRR4302537.4428009/94‑1 (MQ=60)
AGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGC < SRR4302537.2880891/94‑1 (MQ=60)
AGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGC < SRR4302537.4300268/94‑1 (MQ=60)
GTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCC < SRR4302537.2562605/94‑1 (MQ=60)
GTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCC < SRR4302537.157977/94‑1 (MQ=60)
TGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGT < SRR4302537.223890/94‑1 (MQ=60)
TGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGT < SRR4302537.2459278/94‑1 (MQ=60)
GCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTT < SRR4302537.3631641/94‑1 (MQ=60)
CTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCG < SRR4302537.4576930/94‑1 (MQ=60)
CTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGGCGTTCG > SRR4302537.2082726/1‑94 (MQ=60)
CTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCG > SRR4302537.731762/1‑94 (MQ=60)
GCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCT < SRR4302537.5168313/94‑1 (MQ=60)
CACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTG < SRR4302537.2960/94‑1 (MQ=60)
CTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTA > SRR4302537.2040173/1‑94 (MQ=60)
CTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTA > SRR4302537.1117048/1‑94 (MQ=60)
TGGCTCCCATGGCGAAAGGGAATGGGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTAT < SRR4302537.4748984/94‑1 (MQ=60)
GGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCCCCCTAACCCTCTCCCGCAGGGAGAGGGGGCCGTTCGGCGCTGTATG < SRR4302537.4323010/94‑1 (MQ=60)
GCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGATGGGGCCGTTCGGCGCTGTATGT > SRR4302537.3565258/1‑94 (MQ=60)
GCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGT > SRR4302537.705625/1‑94 (MQ=60)
CTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTA < SRR4302537.4918408/94‑1 (MQ=60)
CCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTC > SRR4302537.3042079/1‑94 (MQ=60)
CCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCACCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTC > SRR4302537.1357759/1‑94 (MQ=60)
CATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCC < SRR4302537.6047055/94‑1 (MQ=60)
ATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCC < SRR4302537.2924619/94‑1 (MQ=60)
GCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCA < SRR4302537.349156/94‑1 (MQ=60)
GAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACT < SRR4302537.2806863/94‑1 (MQ=60)
GAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACT > SRR4302537.922448/1‑94 (MQ=60)
AAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTC < SRR4302537.4561886/94‑1 (MQ=60)
AAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCT < SRR4302537.5568500/94‑1 (MQ=60)
AAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCT < SRR4302537.2575322/94‑1 (MQ=60)
AATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC < SRR4302537.3781288/94‑1 (MQ=60)
AATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC < SRR4302537.806275/94‑1 (MQ=60)
ATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACG < SRR4302537.4657810/94‑1 (MQ=60)
CGTCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCTCTCTGAAACGACA < SRR4302537.5716392/94‑1 (MQ=60)
CGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACA < SRR4302537.3080905/94‑1 (MQ=60)
GGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACAC > SRR4302537.991818/1‑94 (MQ=60)
GCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACC < SRR4302537.302833/94‑1 (MQ=60)
GCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACC < SRR4302537.1931990/94‑1 (MQ=60)
CATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCG < SRR4302537.1132478/94‑1 (MQ=60)
ATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGC < SRR4302537.3084824/94‑1 (MQ=60)
AGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCAC < SRR4302537.4920966/94‑1 (MQ=60)
GTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACT > SRR4302537.3022030/1‑94 (MQ=60)
GTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACT < SRR4302537.2309698/94‑1 (MQ=60)
TCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC < SRR4302537.1143700/94‑1 (MQ=60)
CGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCT < SRR4302537.5268782/94‑1 (MQ=60)
CGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCT < SRR4302537.3523454/94‑1 (MQ=60)
GTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTT < SRR4302537.501875/94‑1 (MQ=60)
GTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTT > SRR4302537.4416237/1‑94 (MQ=60)
TGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTT < SRR4302537.815668/94‑1 (MQ=60)
TGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTT < SRR4302537.718705/94‑1 (MQ=60)
CGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCAATCTTTTTTT < SRR4302537.1031816/94‑1 (MQ=60)
GCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTC < SRR4302537.613485/94‑1 (MQ=60)
CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT < SRR4302537.1581173/94‑1 (MQ=60)
CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTC < SRR4302537.5725500/94‑1 (MQ=60)
CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTC < SRR4302537.6191623/94‑1 (MQ=60)
CCCTCACCCTAACCGTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACCCTGAAACGACACCGCACTCTTTTTTTCTCC < SRR4302537.3343681/94‑1 (MQ=60)
CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCTCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC < SRR4302537.1366151/94‑1 (MQ=60)
CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC > SRR4302537.611478/1‑94 (MQ=60)
CTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCT < SRR4302537.629687/94‑1 (MQ=60)
CTCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCT > SRR4302537.5762510/1‑94 (MQ=60)
TCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTC > SRR4302537.5426242/1‑94 (MQ=60)
CCACCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTC < SRR4302537.802927/94‑1 (MQ=60)
AACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG < SRR4302537.6079375/94‑1 (MQ=60)
CCCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC > SRR4302537.1372423/1‑94 (MQ=60)
CCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC < SRR4302537.5328302/94‑1 (MQ=60)
CCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC > SRR4302537.4421064/1‑94 (MQ=60)
CCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC > SRR4302537.3414871/1‑94 (MQ=60)
CCTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTAAGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC > SRR4302537.3492577/1‑94 (MQ=60)
CTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCC > SRR4302537.3311813/1‑94 (MQ=60)
CTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCC > SRR4302537.811350/1‑94 (MQ=60)
CTAACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCC > SRR4302537.4400468/1‑94 (MQ=60)
ACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC > SRR4302537.3044138/1‑94 (MQ=60)
ACCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC > SRR4302537.519484/1‑94 (MQ=60)
ACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC > SRR4302537.1154035/1‑94 (MQ=60)
CCCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCG < SRR4302537.5149636/94‑1 (MQ=60)
CCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGG > SRR4302537.2569645/1‑94 (MQ=60)
CCTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGG > SRR4302537.710445/1‑94 (MQ=60)
CTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGG > SRR4302537.5269099/1‑94 (MQ=60)
CTCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGG < SRR4302537.1345602/94‑1 (MQ=60)
TCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGG < SRR4302537.157158/94‑1 (MQ=60)
TCTCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGG < SRR4302537.4200799/94‑1 (MQ=60)
TCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAG < SRR4302537.3700722/94‑1 (MQ=60)
TCCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAG > SRR4302537.2298580/1‑94 (MQ=60)
CCCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGG > SRR4302537.4823021/1‑94 (MQ=60)
CCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAG > SRR4302537.5006557/1‑94 (MQ=60)
CCTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAG > SRR4302537.2870117/1‑94 (MQ=60)
CTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGG < SRR4302537.554244/94‑1 (MQ=60)
CTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTACTCCCTCGCCCCTCCGGGGAGAGG < SRR4302537.3201711/94‑1 (MQ=60)
CTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGG > SRR4302537.1851206/1‑94 (MQ=60)
TCGGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGG < SRR4302537.4302735/94‑1 (MQ=60)
TCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGG < SRR4302537.2439468/94‑1 (MQ=60)
CAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC > SRR4302537.5714229/1‑94 (MQ=60)
CAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC > SRR4302537.2390702/1‑94 (MQ=60)
CAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGC > SRR4302537.1779579/1‑94 (MQ=60)
CGGGAGAGGGGGCCGTTCGACGCTGTCTGTACTCCCACACTCTGAAAAGCCACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC < SRR4302537.6518171/94‑1 (MQ=60)
AGGGAGAGGGGGCCGTTCGGCGCTGTATGTCCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC < SRR4302537.2335187/94‑1 (MQ=60)
GGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCG > SRR4302537.716024/1‑94 (MQ=60)
GAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGG < SRR4302537.5308265/94‑1 (MQ=60)
GAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGG < SRR4302537.2856194/94‑1 (MQ=60)
AGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGG > SRR4302537.5656022/1‑94 (MQ=60)
AGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCTCTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGG < SRR4302537.2197854/94‑1 (MQ=60)
GAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGT < SRR4302537.6345354/94‑1 (MQ=60)
GAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGT < SRR4302537.5154747/94‑1 (MQ=60)
GAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGT < SRR4302537.5455458/94‑1 (MQ=60)
AGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTG < SRR4302537.3627526/94‑1 (MQ=60)
GGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGA < SRR4302537.3025982/94‑1 (MQ=60)
GGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAG > SRR4302537.1264733/1‑94 (MQ=60)
GGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAG < SRR4302537.6387810/94‑1 (MQ=60)
GGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAG < SRR4302537.586297/94‑1 (MQ=60)
GGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGAACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAG < SRR4302537.5884846/94‑1 (MQ=60)
GGGCCGTTCGGCGCTGTATGTACTCCCTCTCTCTGAAACGACCCCGCCCTCTTTTTTTCTCCCTCGCCCCGCCGGGGAGAGGGCCGGGGTGAGG < SRR4302537.5588209/94‑1 (MQ=60)
GGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGG < SRR4302537.6207470/94‑1 (MQ=60)
|
AGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGG > NC_000913/3778598‑3778782
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
