Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,852,805 |
C→T |
R145Q (CGG→CAG) |
yidF ← |
putative transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,852,805 | 0 | C | T | 99.6%
| 838.6
/ ‑5.5
| 235 | R145Q (CGG→CAG) | yidF | putative transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (122/112); total (122/113) |
| Fisher's exact test for biased strand distribution p-value = 4.81e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01 |
Only 100 of 239 total aligned reads displayed.
TCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGG > NC_000913/3852715‑3852894
|
tCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGc < 2:6099288/93‑1 (MQ=255)
cAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCa > 2:658933/1‑93 (MQ=255)
ggggCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCata < 1:3912147/93‑1 (MQ=255)
ggggCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCata < 1:4989472/93‑1 (MQ=255)
ggggCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCata < 2:4079054/93‑1 (MQ=255)
ggCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATAtg > 1:3675441/1‑93 (MQ=255)
gCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATAtgc < 1:147490/93‑1 (MQ=255)
gCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATAtgc < 1:1016346/93‑1 (MQ=255)
aGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATAtgcgg < 2:5589488/93‑1 (MQ=255)
gCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATAtgcggt > 2:4130321/1‑93 (MQ=255)
gCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATAtgcggt > 1:2180354/1‑93 (MQ=255)
gCCCGTTTAAGCGCACCTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATAtgcggt < 2:5285056/93‑1 (MQ=255)
cccGTTTACGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATAtgcggtg > 2:6289560/1‑93 (MQ=255)
ccGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATAtgcggtgc > 2:3902910/1‑93 (MQ=255)
ccGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATAtgcggtgc > 2:3672411/1‑93 (MQ=255)
cGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATAtgcggtgcg < 2:5317241/93‑1 (MQ=255)
tttAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGa > 2:1548822/1‑93 (MQ=255)
tttAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGa > 1:5886939/1‑93 (MQ=255)
tttAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGa < 1:4343749/93‑1 (MQ=255)
tttAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGa < 1:1049173/93‑1 (MQ=255)
ttAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAg < 1:3269146/93‑1 (MQ=255)
tAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGt > 1:4138306/1‑93 (MQ=255)
aGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTaa < 1:5948173/93‑1 (MQ=255)
gcgcACGTCACCGCAGCATCGTCATCAGCGCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAg < 2:6354197/93‑1 (MQ=255)
aCCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACg > 2:5812331/1‑93 (MQ=255)
aCCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACg > 2:3223389/1‑93 (MQ=255)
aCCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACg > 2:1358984/1‑93 (MQ=255)
ccGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGc > 1:1987447/1‑93 (MQ=255)
cGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGcc < 2:1666695/93‑1 (MQ=255)
gcagcaTCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCt < 1:5263470/93‑1 (MQ=255)
cagcaTCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTg > 2:6243806/1‑93 (MQ=255)
tCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGc > 1:1917608/1‑93 (MQ=255)
gTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGccc > 2:4995343/1‑93 (MQ=255)
gTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGccc > 2:3612522/1‑93 (MQ=255)
tcaGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAGCGCCTGATAGCCGGcac > 1:2125568/1‑93 (MQ=255)
gCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACaaa > 1:3781927/1‑93 (MQ=255)
gCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACaaa > 2:1823054/1‑93 (MQ=255)
gCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACaaa > 2:3440384/1‑93 (MQ=255)
tCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGc > 2:2539401/1‑93 (MQ=255)
tCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGc < 1:1741843/93‑1 (MQ=255)
tCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGc < 1:4420801/93‑1 (MQ=255)
tCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGc < 2:4480128/93‑1 (MQ=255)
ccATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCa < 2:5419163/93‑1 (MQ=255)
cATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCAc < 1:4968003/93‑1 (MQ=255)
cATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCAc < 1:5332941/93‑1 (MQ=255)
cATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCAc < 2:2157320/93‑1 (MQ=255)
cATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCAc < 2:5610596/93‑1 (MQ=255)
cATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCAc < 2:4200150/93‑1 (MQ=255)
cATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGGAAGAATAAAACGCCTGATAGCCCGCACAAAGCAc > 1:4872250/1‑93 (MQ=255)
attggAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACg > 1:27013/4‑93 (MQ=255)
aTGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACg < 1:3433458/93‑1 (MQ=255)
aTGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACg > 1:1715522/1‑93 (MQ=255)
aTGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACg > 1:729820/1‑93 (MQ=255)
tGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGc > 1:2671896/1‑93 (MQ=255)
gggAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCt < 1:2417534/93‑1 (MQ=255)
gggAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCt > 2:1027472/1‑93 (MQ=255)
ggAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTg < 2:593109/93‑1 (MQ=255)
gagaACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGt > 1:3545480/1‑93 (MQ=255)
agaACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTc > 2:2842783/1‑93 (MQ=255)
gaACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCt < 2:6393562/93‑1 (MQ=255)
gaACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCt < 1:1866890/93‑1 (MQ=255)
aCGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTgg > 1:6302091/1‑93 (MQ=255)
aTGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGt < 1:4041996/93‑1 (MQ=255)
aTGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGt > 1:2262080/1‑93 (MQ=255)
aTGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGt > 2:2750637/1‑93 (MQ=255)
aTGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGt < 2:2644158/93‑1 (MQ=255)
aTGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGt < 2:4097198/93‑1 (MQ=255)
aTGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGt > 2:1625715/1‑93 (MQ=255)
tgctgcTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGtc < 1:2506828/93‑1 (MQ=255)
gctgctTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGtct > 2:2361813/1‑93 (MQ=255)
ctgctTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGtctc < 2:1084527/93‑1 (MQ=255)
ctgctTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGATGTCTGGCGtctc > 2:5727264/1‑93 (MQ=255)
tgctTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTcc < 1:5197693/93‑1 (MQ=255)
tttATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGc > 1:4319850/1‑93 (MQ=255)
tATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCg > 1:4574675/1‑93 (MQ=255)
aTCAGATCCCGCATCACCTGCATATGCGGTGCGGAGCAAGCATAAAACGCCTGATAGGCCGCACAAAGAACGCTGTCTGGCGTCTCCTGcccg > 2:1521673/1‑91 (MQ=255)
aTCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGa < 1:6453341/93‑1 (MQ=255)
tCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAg > 1:3051036/1‑93 (MQ=255)
cAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGc > 2:4275327/1‑93 (MQ=255)
cAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGc < 2:4540862/93‑1 (MQ=255)
cAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGc < 1:2966096/93‑1 (MQ=255)
gATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGt > 1:140991/1‑93 (MQ=255)
gATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGt > 2:2932423/1‑93 (MQ=255)
aTCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTg > 2:4817060/1‑93 (MQ=255)
cACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCg > 2:1574016/1‑93 (MQ=255)
cACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCg > 1:1584532/1‑93 (MQ=255)
aCGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGCGCGTGCgg > 2:3142109/1‑93 (MQ=255)
aCGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCgg < 2:1907705/93‑1 (MQ=255)
aCGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCgg < 1:3090446/93‑1 (MQ=255)
gCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGc > 2:3073696/1‑93 (MQ=255)
gCATCACCTGCATATGCGGTGCGGAGCAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGc > 2:5678531/1‑93 (MQ=255)
cATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGca > 2:2237152/1‑93 (MQ=255)
tCACCTGCATATGCGGTGCGGAGTAATAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGcaca > 1:5033637/1‑93 (MQ=255)
tCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGcaca > 2:1679295/1‑93 (MQ=255)
tCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGcaca > 1:6224051/1‑93 (MQ=255)
tCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGcaca < 1:3487462/93‑1 (MQ=255)
aCCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAgg > 2:331215/1‑93 (MQ=255)
aCCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAgg > 2:3014466/1‑93 (MQ=255)
aCCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAgg > 1:4024545/1‑93 (MQ=255)
aCCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAgg > 1:1181733/1‑93 (MQ=255)
|
TCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGG > NC_000913/3852715‑3852894
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGAT > NC_000913/3852712‑3852898
|
GCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCT < SRR4302537.1758892/94‑1 (MQ=60)
CATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTG < SRR4302537.5355401/94‑1 (MQ=60)
CATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTG < SRR4302537.1104630/94‑1 (MQ=60)
CATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTG > SRR4302537.1401932/1‑94 (MQ=60)
ATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGC < SRR4302537.5548610/94‑1 (MQ=60)
ATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGC < SRR4302537.2244634/94‑1 (MQ=60)
CAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCAT < SRR4302537.3181222/94‑1 (MQ=60)
GGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATAT < SRR4302537.3939494/94‑1 (MQ=60)
GGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATAT < SRR4302537.5023859/94‑1 (MQ=60)
GGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATG < SRR4302537.4492413/94‑1 (MQ=60)
GGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATG > SRR4302537.3701293/1‑94 (MQ=60)
GGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAAAGATGCTGCTTTATCAGATCACGAATCACCTGCATATGC > SRR4302537.232914/1‑94 (MQ=60)
GCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCG < SRR4302537.148545/94‑1 (MQ=60)
GCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCG < SRR4302537.1023345/94‑1 (MQ=60)
AGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGT > SRR4302537.2691573/1‑94 (MQ=60)
AGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGT > SRR4302537.2195718/1‑94 (MQ=60)
CCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGC > SRR4302537.3173419/1‑94 (MQ=60)
CCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCG < SRR4302537.2255441/94‑1 (MQ=60)
CGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGG > SRR4302537.1036895/1‑94 (MQ=60)
GTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGA > SRR4302537.5927331/1‑94 (MQ=60)
TTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAG < SRR4302537.4373872/94‑1 (MQ=60)
TTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAG < SRR4302537.6106024/94‑1 (MQ=60)
TTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAG < SRR4302537.1056407/94‑1 (MQ=60)
TTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGT > SRR4302537.4167172/1‑94 (MQ=60)
TTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGT < SRR4302537.3292214/94‑1 (MQ=60)
TAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTA < SRR4302537.1660456/94‑1 (MQ=60)
AAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAA > SRR4302537.4062007/1‑94 (MQ=60)
AAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAA > SRR4302537.5304195/1‑94 (MQ=60)
AGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAG < SRR4302537.5989001/94‑1 (MQ=60)
CGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAA < SRR4302537.3819184/94‑1 (MQ=60)
CGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAA > SRR4302537.3039448/1‑94 (MQ=60)
CGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAA > SRR4302537.175883/1‑94 (MQ=60)
CGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAA < SRR4302537.3079306/94‑1 (MQ=60)
CACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACG < SRR4302537.4046441/94‑1 (MQ=60)
ACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGC > SRR4302537.2001266/1‑94 (MQ=60)
CGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCT > SRR4302537.2683671/1‑94 (MQ=60)
GCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTG < SRR4302537.5299687/94‑1 (MQ=60)
GCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTG < SRR4302537.2451243/94‑1 (MQ=60)
GCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAAAGCCTG > SRR4302537.2076256/1‑94 (MQ=60)
AGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGAT < SRR4302537.2976830/94‑1 (MQ=60)
GCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATA < SRR4302537.1856461/94‑1 (MQ=60)
GCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATA < SRR4302537.272053/94‑1 (MQ=60)
GCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATA < SRR4302537.694372/94‑1 (MQ=60)
CATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAG < SRR4302537.3519080/94‑1 (MQ=60)
CATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAG < SRR4302537.1067953/94‑1 (MQ=60)
ATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGC > SRR4302537.1930921/1‑94 (MQ=60)
CGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCCCCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCC < SRR4302537.948561/94‑1 (MQ=60)
CATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCA > SRR4302537.5498970/1‑94 (MQ=60)
ATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAGCGCCTGATAGCCGGCAC > SRR4302537.2140522/1‑94 (MQ=60)
ATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCAC < SRR4302537.5012188/94‑1 (MQ=60)
ATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCAC > SRR4302537.1950009/1‑94 (MQ=60)
ATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCAC > SRR4302537.347825/1‑94 (MQ=60)
CAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAA > SRR4302537.6471699/1‑94 (MQ=60)
AGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAA > SRR4302537.2627639/1‑94 (MQ=60)
AGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAA > SRR4302537.5240539/1‑94 (MQ=60)
AGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAA > SRR4302537.3808482/1‑94 (MQ=60)
CTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGC > SRR4302537.1750314/1‑94 (MQ=60)
CTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGC > SRR4302537.373683/1‑94 (MQ=60)
CTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCATGATAGCCCGCACAAAGC > SRR4302537.2135617/1‑94 (MQ=60)
TCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCA < SRR4302537.4451321/94‑1 (MQ=60)
TCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCA > SRR4302537.3568467/1‑94 (MQ=60)
TCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCA < SRR4302537.1753987/94‑1 (MQ=60)
TCCAGGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCCCAAAGCA < SRR4302537.5949388/94‑1 (MQ=60)
CCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCAC < SRR4302537.4778062/94‑1 (MQ=60)
CCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGGAAGAATAAAACGCCTGATAGCCCGCACAAAGCAC > SRR4302537.4905877/1‑94 (MQ=60)
CATTGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACG > SRR4302537.27226/1‑94 (MQ=60)
CATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACG < SRR4302537.22741/94‑1 (MQ=60)
CATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACG > SRR4302537.1727499/1‑94 (MQ=60)
CATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACG < SRR4302537.5002240/94‑1 (MQ=60)
CATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACG < SRR4302537.5369516/94‑1 (MQ=60)
CATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACG > SRR4302537.734805/1‑94 (MQ=60)
ATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGC > SRR4302537.2690561/1‑94 (MQ=60)
ATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGC < SRR4302537.3457760/94‑1 (MQ=60)
TGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCT < SRR4302537.376544/94‑1 (MQ=60)
GGGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTG < SRR4302537.2434564/94‑1 (MQ=60)
GGAGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGT > SRR4302537.3570522/1‑94 (MQ=60)
AGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCT < SRR4302537.1598240/94‑1 (MQ=60)
AGAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCT < SRR4302537.6499781/94‑1 (MQ=60)
GAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTG < SRR4302537.1879885/94‑1 (MQ=60)
GAACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTG > SRR4302537.1532498/1‑94 (MQ=60)
AACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGG > SRR4302537.6345248/1‑94 (MQ=60)
AACGATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGG < SRR4302537.5910776/94‑1 (MQ=60)
GATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGT > SRR4302537.2278043/1‑94 (MQ=60)
ATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTC > SRR4302537.1311098/1‑94 (MQ=60)
ATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTC < SRR4302537.4070265/94‑1 (MQ=60)
ATGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTC > SRR4302537.5095840/1‑94 (MQ=60)
TGCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCT < SRR4302537.5174254/94‑1 (MQ=60)
TGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCT < SRR4302537.2524462/94‑1 (MQ=60)
GCTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATACAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTC > SRR4302537.6068889/1‑94 (MQ=60)
CTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCC > SRR4302537.4921945/1‑94 (MQ=60)
CTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCC > SRR4302537.4347212/1‑94 (MQ=60)
CTGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCC > SRR4302537.3587941/1‑94 (MQ=60)
TGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCT < SRR4302537.5233453/94‑1 (MQ=60)
TGCTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCT > SRR4302537.2167734/1‑94 (MQ=60)
CTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGC < SRR4302537.4459552/94‑1 (MQ=60)
CTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGC > SRR4302537.4349880/1‑94 (MQ=60)
CTTTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGC > SRR4302537.1451614/1‑94 (MQ=60)
TTATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCG > SRR4302537.4606337/1‑94 (MQ=60)
ATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAG > SRR4302537.5026042/1‑94 (MQ=60)
ATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAG < SRR4302537.6497090/94‑1 (MQ=60)
ATCAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAG > SRR4302537.3072300/1‑94 (MQ=60)
CAGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCG < SRR4302537.2986902/94‑1 (MQ=60)
AGATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGT > SRR4302537.141993/1‑94 (MQ=60)
GATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTG < SRR4302537.4066438/94‑1 (MQ=60)
ATCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGC < SRR4302537.3368811/94‑1 (MQ=60)
TCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCG < SRR4302537.4370147/94‑1 (MQ=60)
TCACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCG > SRR4302537.1595606/1‑94 (MQ=60)
CACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGG < SRR4302537.4973383/94‑1 (MQ=60)
CACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGG > SRR4302537.19145/1‑94 (MQ=60)
ACGCATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGG < SRR4302537.3112000/94‑1 (MQ=60)
CATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCAC < SRR4302537.6304483/94‑1 (MQ=60)
ATCACCTGCATATGCGGTGCGGAGTAATAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACA > SRR4302537.5068291/1‑94 (MQ=60)
ATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACA > SRR4302537.4347345/1‑94 (MQ=60)
ATCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACA > SRR4302537.6266887/1‑94 (MQ=60)
TCACCTGCATATGCGGTGCTGAGTAAGAATAAAACGCCTGATGCCCCGCACAAAGCACGCGGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAG < SRR4302537.1941269/94‑1 (MQ=60)
TCACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAG < SRR4302537.3512123/94‑1 (MQ=60)
CACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGG < SRR4302537.4434636/94‑1 (MQ=60)
CACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGG > SRR4302537.1189954/1‑94 (MQ=60)
CACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGG > SRR4302537.1372858/1‑94 (MQ=60)
CACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGG > SRR4302537.4096022/1‑94 (MQ=60)
CACCTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGG > SRR4302537.4052720/1‑94 (MQ=60)
CTGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGA > SRR4302537.2665249/1‑94 (MQ=60)
TGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGAT < SRR4302537.5176250/94‑1 (MQ=60)
TGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGAT > SRR4302537.3393622/1‑94 (MQ=60)
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GCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGAT > NC_000913/3852712‑3852898
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
