Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,885,848 T→C intergenic (+27/‑216) thdF → / → tnaL GTP‑binding protein in thiophene and furan oxidation/tryptophanase leader peptide

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,885,8480TC100.0% 726.0 / NA 208intergenic (+27/‑216)thdF/tnaLGTP‑binding protein in thiophene and furan oxidation/tryptophanase leader peptide
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (80/128);  total (80/128)

Only 100 of 216 total aligned reads displayed.

CGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCT  >  NC_000913/3885758‑3885937
                                                                                          |                                                                                          
cGGGGACTTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGt                                                                                          <  2:3178034/93‑1 (MQ=255)
cGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGt                                                                                          >  1:1350664/1‑93 (MQ=255)
 ggggAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTc                                                                                         <  2:4782708/93‑1 (MQ=255)
  gggAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCa                                                                                        <  1:3792848/93‑1 (MQ=255)
  gggAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCa                                                                                        <  2:3121962/93‑1 (MQ=255)
     aaTTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGAt                                                                                     >  2:5005104/1‑93 (MQ=255)
      aTTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATg                                                                                    >  1:71018/1‑93 (MQ=255)
      aTTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATg                                                                                    >  2:1773837/1‑93 (MQ=255)
       tttACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGc                                                                                   <  1:5474596/93‑1 (MQ=255)
       tttACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGc                                                                                   <  1:3860625/93‑1 (MQ=255)
         tACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCgg                                                                                 >  1:624774/1‑93 (MQ=255)
          aCTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGgc                                                                                <  2:5924211/93‑1 (MQ=255)
          aCTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGgc                                                                                <  2:5559995/93‑1 (MQ=255)
          aCTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGgc                                                                                <  2:6057373/93‑1 (MQ=255)
           cTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGgct                                                                               >  2:441072/1‑93 (MQ=255)
            ttCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGgctt                                                                              <  1:5621568/93‑1 (MQ=255)
               aGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGgcttcgc                                                                           >  1:4365410/1‑93 (MQ=255)
                gacgacCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGgcttcgct                                                                          >  2:5962702/1‑93 (MQ=255)
                 acgacCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGgcttcgctt                                                                         >  1:6235795/1‑93 (MQ=255)
                 acgacCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGgcttcgctt                                                                         <  2:807900/93‑1 (MQ=255)
                  cgacCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGgcttcgcttc                                                                        <  2:1021309/93‑1 (MQ=255)
                   gacCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCa                                                                       <  2:2504159/93‑1 (MQ=255)
                     ccTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCAtt                                                                     >  2:4219593/1‑93 (MQ=255)
                     ccTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCAtt                                                                     <  1:3063527/93‑1 (MQ=255)
                      ctgctgGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTg                                                                    >  1:6448349/1‑93 (MQ=255)
                      ctgctgGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTg                                                                    >  1:2759553/1‑93 (MQ=255)
                      ctgctgGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTg                                                                    >  2:1541221/1‑93 (MQ=255)
                        gctgGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGtt                                                                  <  1:4002736/93‑1 (MQ=255)
                          tgGGCCGGTTTTTCTCCAGCTTCTGTATTGGAAATTAACCGCCCTCACAAAGCCGCATTCTGCCCGTCAGATGCGGCTTCGCTTCATTGTTAc                                                                <  2:3705666/93‑1 (MQ=255)
                            gggCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCa                                                              <  2:214220/93‑1 (MQ=255)
                             ggCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCAc                                                             <  1:6154550/93‑1 (MQ=255)
                                ggATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTcc                                                          <  1:3655827/93‑1 (MQ=255)
                                  gttttCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTg                                                        <  1:4259193/92‑1 (MQ=255)
                                  aTTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTg                                                        <  1:199831/93‑1 (MQ=255)
                                   ttttCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGt                                                       >  2:5521848/1‑93 (MQ=255)
                                    tttCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGtt                                                      >  2:2241697/1‑93 (MQ=255)
                                    ttcctcCAGCTTCTGTATGGGAAGGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGtt                                                      <  2:3654991/90‑1 (MQ=255)
                                     ttCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTa                                                     >  2:3533444/1‑93 (MQ=255)
                                      tctcCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTAt                                                    <  2:1741186/93‑1 (MQ=255)
                                      tctcCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTAt                                                    <  2:3163445/93‑1 (MQ=255)
                                      tctcCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTAt                                                    >  1:1158405/1‑93 (MQ=255)
                                      tctcCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTAt                                                    <  1:5939866/93‑1 (MQ=255)
                                        tcCAGCTTCTGTATTGGTAAGTAGCCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTc                                                  <  1:4947217/93‑1 (MQ=255)
                                          cAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCt                                                <  2:3200198/93‑1 (MQ=255)
                                           aGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTc                                               >  2:4865203/1‑93 (MQ=255)
                                            gCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCa                                              >  2:5777864/1‑93 (MQ=255)
                                            gCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCa                                              >  1:3754669/1‑93 (MQ=255)
                                            gCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCa                                              <  2:5279791/93‑1 (MQ=255)
                                              ttCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAAc                                            >  2:2698875/1‑93 (MQ=255)
                                               tCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAAcc                                           <  2:4743416/93‑1 (MQ=255)
                                               tCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAAcc                                           >  1:2548000/1‑93 (MQ=255)
                                                cTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAAccc                                          <  1:2942248/93‑1 (MQ=255)
                                                cTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAAccc                                          <  2:5152421/93‑1 (MQ=255)
                                                 tGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑t                                        >  2:2966302/1‑93 (MQ=255)
                                                 tGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑t                                        >  2:5420325/1‑93 (MQ=255)
                                                  gTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑tt                                       >  2:5095775/1‑93 (MQ=255)
                                                    aTTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑tttt                                     <  1:4057452/93‑1 (MQ=255)
                                                    aTTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑tttt                                     <  2:1099709/93‑1 (MQ=255)
                                                     ttGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑ttttt                                    >  1:3327295/1‑93 (MQ=255)
                                                     ttGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑ttttt                                    <  1:2106700/93‑1 (MQ=255)
                                                     ttGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑ttttt                                    <  1:801107/93‑1 (MQ=255)
                                                         taagtaaCCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTaa                                >  1:5387918/1‑93 (MQ=255)
                                                          aagtaaCCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTaaa                               >  1:4602453/1‑93 (MQ=255)
                                                           agtaaCCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAAc                              <  1:4840546/93‑1 (MQ=255)
                                                           agtaaCCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAAc                              >  2:895649/1‑93 (MQ=255)
                                                           agtaaCCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAAc                              <  1:633661/93‑1 (MQ=255)
                                                            gtaaCCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACa                             <  1:3011684/93‑1 (MQ=255)
                                                             taaCCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTTAAACa                             >  2:2394952/1‑93 (MQ=255)
                                                             taaCCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACAt                            <  2:4908027/93‑1 (MQ=255)
                                                              aaCCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACAtt                           >  2:908254/1‑93 (MQ=255)
                                                               aCCGCGCTTACGAAGCCGCGTTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTa                          <  1:4505686/93‑1 (MQ=255)
                                                               aCCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTa                          <  1:5044840/93‑1 (MQ=255)
                                                                ccGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTaa                         <  1:2408607/93‑1 (MQ=255)
                                                                 cgcgCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTaaa                        >  1:5122223/1‑93 (MQ=255)
                                                                 cgcgCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTaaa                        <  2:4117773/93‑1 (MQ=255)
                                                                  gcgcTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTaaaa                       >  2:1820096/1‑93 (MQ=255)
                                                                  gcgcTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTaaaa                       <  1:2354906/93‑1 (MQ=255)
                                                                   cgcTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTAAAAt                      <  2:530087/93‑1 (MQ=255)
                                                                   cgcTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTAAAAt                      <  1:1428967/93‑1 (MQ=255)
                                                                     cTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTAAAATTc                    <  1:4630776/93‑1 (MQ=255)
                                                                      ttACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTAAAATTCt                   >  1:1006939/1‑93 (MQ=255)
                                                                      ttACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTAAAATTCt                   <  2:4492828/93‑1 (MQ=255)
                                                                      ttACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTAAAATTCt                   <  2:3062174/93‑1 (MQ=255)
                                                                       tACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTAAAATTCtt                  <  1:1532574/93‑1 (MQ=255)
                                                                        aCGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTAAAATTCTTa                 <  2:6093884/93‑1 (MQ=255)
                                                                        aCGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTAAAATTCTTa                 <  1:5311391/93‑1 (MQ=255)
                                                                         cGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTAAAATTCTTAc                <  1:1860870/93‑1 (MQ=255)
                                                                         cGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTAACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTAAAATTCTTAc                <  2:6379626/93‑1 (MQ=255)
                                                                            aGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTAAAATTCTTACGTa             >  2:3270333/1‑93 (MQ=255)
                                                                             gCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTAAAATTCTTACGTaa            >  1:2497138/1‑93 (MQ=255)
                                                                              ccGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTAAAATTCTTACGTAAt           <  2:254884/93‑1 (MQ=255)
                                                                               cGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTAAAATTCTTACGTAAtt          >  1:6309946/1‑93 (MQ=255)
                                                                                 cATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTAAAATTCTTACGTAATTta        >  1:2143205/1‑93 (MQ=255)
                                                                                 cATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTAAAATTCTTACGTAATTta        <  2:2843697/93‑1 (MQ=255)
                                                                                   ttCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTAAAATTCTTACGTAATTtata      <  2:6197578/93‑1 (MQ=255)
                                                                                   ttCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTAAAATTCTTACGTAATTtata      <  2:399176/93‑1 (MQ=255)
                                                                                     cTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTAAAATTCTTACGTAATTTATAAt    <  1:3156520/93‑1 (MQ=255)
                                                                                      tGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTAAAATTCTTACGTAATTTATAATc   <  2:2828193/93‑1 (MQ=255)
                                                                                      tGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTAAAATTCTTACGTAATTTATAATc   >  2:755809/1‑93 (MQ=255)
                                                                                      tGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTAAAATTCTTACGTAATTTATAATc   <  1:6379446/93‑1 (MQ=255)
                                                                                          |                                                                                          
CGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC‑TTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCT  >  NC_000913/3885758‑3885937

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAA  >  NC_000913/3885755‑3885941
                                                                                             |                                                                                             
CACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACC                                                                                               <  SRR4302537.1040618/94‑1 (MQ=60)
 ACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCG                                                                                              <  SRR4302537.2695994/94‑1 (MQ=60)
 ACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCG                                                                                              >  SRR4302537.393547/1‑94 (MQ=60)
  CCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGT                                                                                             >  SRR4302537.1360073/1‑94 (MQ=60)
  CCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGT                                                                                             >  SRR4302537.4997270/1‑94 (MQ=60)
   CGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTGCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTC                                                                                            <  SRR4302537.2148062/94‑1 (MQ=60)
    GGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCA                                                                                           >  SRR4302537.2425245/1‑94 (MQ=60)
     GGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAG                                                                                          <  SRR4302537.3819468/94‑1 (MQ=60)
      GGAATTTACGTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGA                                                                                         <  SRR4302537.3048874/94‑1 (MQ=60)
       GAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGAT                                                                                        <  SRR4302537.3987440/94‑1 (MQ=60)
       GAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGAT                                                                                        <  SRR4302537.4795443/94‑1 (MQ=60)
       GAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGAT                                                                                        <  SRR4302537.457104/94‑1 (MQ=60)
        AATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATG                                                                                       <  SRR4302537.5767700/94‑1 (MQ=60)
        AATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATG                                                                                       >  SRR4302537.71537/1‑94 (MQ=60)
          TTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCG                                                                                     <  SRR4302537.5511959/94‑1 (MQ=60)
          TTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCG                                                                                     <  SRR4302537.3887649/94‑1 (MQ=60)
           TTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGG                                                                                    >  SRR4302537.629034/1‑94 (MQ=60)
               TTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTC                                                                                <  SRR4302537.5660003/94‑1 (MQ=60)
               TTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTC                                                                                <  SRR4302537.320340/94‑1 (MQ=60)
                 CAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGC                                                                              >  SRR4302537.4395595/1‑94 (MQ=60)
                   GACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTT                                                                            >  SRR4302537.6278678/1‑94 (MQ=60)
                     CGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCA                                                                          <  SRR4302537.5350733/94‑1 (MQ=60)
                      GACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCAT                                                                         <  SRR4302537.3618159/94‑1 (MQ=60)
                      GACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCAT                                                                         <  SRR4302537.518229/94‑1 (MQ=60)
                        CCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTG                                                                       <  SRR4302537.463659/94‑1 (MQ=60)
                        CCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTG                                                                       >  SRR4302537.6492088/1‑94 (MQ=60)
                        CCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTG                                                                       <  SRR4302537.6503834/94‑1 (MQ=60)
                        CCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTG                                                                       <  SRR4302537.3084870/94‑1 (MQ=60)
                        CCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTG                                                                       >  SRR4302537.2778812/1‑94 (MQ=60)
                         CTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGT                                                                      >  SRR4302537.1413180/1‑94 (MQ=60)
                         CTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGT                                                                      >  SRR4302537.5134338/1‑94 (MQ=60)
                          TGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTT                                                                     >  SRR4302537.3808564/1‑94 (MQ=60)
                          TGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTT                                                                     <  SRR4302537.310940/94‑1 (MQ=60)
                           GCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTA                                                                    <  SRR4302537.4030756/94‑1 (MQ=60)
                               GGGTGGTTTTTCTCCGGCGTCTGTATTGGGAAGTAACCGCGCTTACGGAACCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCAC                                                                <  SRR4302537.2639806/94‑1 (MQ=60)
                                GGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACT                                                               <  SRR4302537.6196892/94‑1 (MQ=60)
                                  CGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCC                                                             >  SRR4302537.5000431/1‑94 (MQ=60)
                                   GGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCT                                                            <  SRR4302537.4066529/94‑1 (MQ=60)
                                   GGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCT                                                            <  SRR4302537.6306235/94‑1 (MQ=60)
                                   GGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCT                                                            <  SRR4302537.3681554/94‑1 (MQ=60)
                                     GTTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGT                                                          <  SRR4302537.4288791/94‑1 (MQ=60)
                                     ATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGT                                                          <  SRR4302537.201261/94‑1 (MQ=60)
                                        TTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTAT                                                       >  SRR4302537.1166465/1‑94 (MQ=60)
                                         TCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATT                                                      <  SRR4302537.5980635/94‑1 (MQ=60)
                                          CTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTC                                                     >  SRR4302537.298423/1‑94 (MQ=60)
                                          CTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTC                                                     >  SRR4302537.1183938/1‑94 (MQ=60)
                                           TCCAGCTTCTGTATTGGTAAGTAGCCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCC                                                    <  SRR4302537.4981324/94‑1 (MQ=60)
                                             CAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTC                                                  <  SRR4302537.6383379/94‑1 (MQ=60)
                                              AGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCA                                                 >  SRR4302537.3781036/1‑94 (MQ=60)
                                              AGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCA                                                 >  SRR4302537.5501062/1‑94 (MQ=60)
                                               GCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAA                                                >  SRR4302537.6280309/1‑94 (MQ=60)
                                                 TTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACC                                              >  SRR4302537.2565849/1‑94 (MQ=60)
                                                  TCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCC                                             >  SRR4302537.6425517/1‑94 (MQ=60)
                                                   CTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCT                                            <  SRR4302537.2962901/94‑1 (MQ=60)
                                                    TGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTT                                           >  SRR4302537.4366604/1‑94 (MQ=60)
                                                     GTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT                                          >  SRR4302537.4446567/1‑94 (MQ=60)
                                                      TATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTT                                         >  SRR4302537.3483140/1‑94 (MQ=60)
                                                       ATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTT                                        >  SRR4302537.3350844/1‑94 (MQ=60)
                                                       ATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTT                                        <  SRR4302537.4085804/94‑1 (MQ=60)
                                                        TTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTT                                       <  SRR4302537.806610/94‑1 (MQ=60)
                                                        TTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTT                                       <  SRR4302537.2121550/94‑1 (MQ=60)
                                                           GTAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAA                                    >  SRR4302537.5424739/1‑94 (MQ=60)
                                                            TAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAA                                   <  SRR4302537.814196/94‑1 (MQ=60)
                                                            TAAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAA                                   >  SRR4302537.4634308/1‑94 (MQ=60)
                                                             AAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAAC                                  <  SRR4302537.6379856/94‑1 (MQ=60)
                                                             AAGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAAC                                  <  SRR4302537.201862/94‑1 (MQ=60)
                                                              AGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACA                                 <  SRR4302537.2852267/94‑1 (MQ=60)
                                                              AGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACA                                 <  SRR4302537.637967/94‑1 (MQ=60)
                                                              AGTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACA                                 <  SRR4302537.4873956/94‑1 (MQ=60)
                                                               GTAACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACAT                                <  SRR4302537.3032684/94‑1 (MQ=60)
                                                                  ACCGCGCTTACGAAGCCGCGTTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAA                             <  SRR4302537.4536842/94‑1 (MQ=60)
                                                                  ACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAA                             >  SRR4302537.5695706/1‑94 (MQ=60)
                                                                  ACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAA                             <  SRR4302537.5079584/94‑1 (MQ=60)
                                                                  ACCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAA                             <  SRR4302537.2312836/94‑1 (MQ=60)
                                                                   CCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAA                            >  SRR4302537.382982/1‑94 (MQ=60)
                                                                   CCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAA                            <  SRR4302537.2425565/94‑1 (MQ=60)
                                                                   CCGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAA                            >  SRR4302537.5157526/1‑94 (MQ=60)
                                                                    CGCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAA                           <  SRR4302537.4881200/94‑1 (MQ=60)
                                                                     GCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAAT                          <  SRR4302537.4246273/94‑1 (MQ=60)
                                                                     GCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAAT                          >  SRR4302537.1082915/1‑94 (MQ=60)
                                                                     GCGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAAT                          <  SRR4302537.2371510/94‑1 (MQ=60)
                                                                      CGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATT                         <  SRR4302537.1991661/94‑1 (MQ=60)
                                                                      CGCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATT                         <  SRR4302537.1438915/94‑1 (MQ=60)
                                                                      CGCTTACGAAGCAGCATTCGGACCGTCAGATGCGGATTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATT                         <  SRR4302537.5618961/94‑1 (MQ=60)
                                                                       CCTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTC                        <  SRR4302537.6181898/94‑1 (MQ=60)
                                                                        CTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCT                       >  SRR4302537.1013889/1‑94 (MQ=60)
                                                                        CTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCT                       <  SRR4302537.4662814/94‑1 (MQ=60)
                                                                        CTTACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCT                       <  SRR4302537.800647/94‑1 (MQ=60)
                                                                          TACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTA                     <  SRR4302537.1543284/94‑1 (MQ=60)
                                                                           ACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTAC                    <  SRR4302537.5347875/94‑1 (MQ=60)
                                                                           ACGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTAC                    >  SRR4302537.255814/1‑94 (MQ=60)
                                                                            CGAAGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACG                   <  SRR4302537.1873828/94‑1 (MQ=60)
                                                                               AGCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAA                >  SRR4302537.2514714/1‑94 (MQ=60)
                                                                                GCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAAT               <  SRR4302537.2455333/94‑1 (MQ=60)
                                                                                GCCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAAT               >  SRR4302537.6388309/1‑94 (MQ=60)
                                                                                 CCGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATT              >  SRR4302537.6353147/1‑94 (MQ=60)
                                                                                  CGCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTT             <  SRR4302537.2764684/94‑1 (MQ=60)
                                                                                   GCATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTA            >  SRR4302537.2158281/1‑94 (MQ=60)
                                                                                    CATTCTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTAT           >  SRR4302537.1662102/1‑94 (MQ=60)
                                                                                        CTGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATC       <  SRR4302537.3178680/94‑1 (MQ=60)
                                                                                         TGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCT      <  SRR4302537.3759186/94‑1 (MQ=60)
                                                                                         TGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCT      <  SRR4302537.2067107/94‑1 (MQ=60)
                                                                                         TGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCT      >  SRR4302537.1495783/1‑94 (MQ=60)
                                                                                         TGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCT      <  SRR4302537.6223662/94‑1 (MQ=60)
                                                                                         TGACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCT      <  SRR4302537.6422937/94‑1 (MQ=60)
                                                                                          GACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTT     <  SRR4302537.420154/94‑1 (MQ=60)
                                                                                           ACCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTT    <  SRR4302537.5987415/94‑1 (MQ=60)
                                                                                            CCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTA   <  SRR4302537.6178387/94‑1 (MQ=60)
                                                                                            CCGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTA   <  SRR4302537.3665615/94‑1 (MQ=60)
                                                                                             CGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAA  >  SRR4302537.3570766/1‑94 (MQ=60)
                                                                                             CGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAA  >  SRR4302537.2021108/1‑94 (MQ=60)
                                                                                             CGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAA  <  SRR4302537.1813431/94‑1 (MQ=60)
                                                                                             CGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAA  <  SRR4302537.4034110/94‑1 (MQ=60)
                                                                                             |                                                                                             
CACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAA  >  NC_000913/3885755‑3885941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑