Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,941,733 +G noncoding (408/2906 nt) rrlC → 23S ribosomal RNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,941,7301.G77.6% 94.6 / 48.4 67noncoding (405/2906 nt)rrlC23S ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base . (6/9);  new base G (36/16);  total (42/25)
Fisher's exact test for biased strand distribution p-value = 6.69e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGAGGGA‑C‑‑CATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAA  >  NC_000913/3941639‑3941797
                                                                                            |                                                                       
cgcgcgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑g                                                                       <  2:1545348/93‑1 (MQ=39)
cgcgcgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑g                                                                       <  2:1086019/93‑1 (MQ=39)
cgcgcgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑g                                                                       <  1:2480225/93‑1 (MQ=39)
 gcgcgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑gg                                                                      >  2:3340373/1‑93 (MQ=37)
 gcgcgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑gg                                                                      <  1:1422569/93‑1 (MQ=37)
 gcgcgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑gg                                                                      >  1:3654929/1‑93 (MQ=37)
 gcgcgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑gg                                                                      >  2:6003341/1‑93 (MQ=37)
  cgcgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑ggg                                                                     <  2:3426126/93‑1 (MQ=37)
  cgcgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑ggg                                                                     <  1:4012457/93‑1 (MQ=37)
  cgcgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGACGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑ggg                                                                     >  1:2327031/1‑93 (MQ=37)
   gcgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑gggg                                                                    <  2:214030/93‑2 (MQ=25)
   gcgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑gggg                                                                    >  2:2506616/1‑92 (MQ=25)
   gcgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑gggg                                                                    <  2:45135/93‑2 (MQ=25)
    cgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑ggggg                                                                   <  1:1304249/93‑3 (MQ=21)
     gATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑gggggg                                                                  <  2:4738630/93‑1 (MQ=18)
     gATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑gggggg                                                                  <  2:1022571/93‑1 (MQ=18)
     gATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑gggggg                                                                  <  1:6410743/93‑1 (MQ=18)
     gATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑gggggg                                                                  >  2:3915320/1‑93 (MQ=25)
     gATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑gggggg                                                                  >  2:4044682/1‑93 (MQ=18)
     gATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑gggggg                                                                  >  2:1860200/1‑93 (MQ=18)
     gATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑gggggg                                                                  <  1:350796/93‑1 (MQ=18)
     gATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑gggggg                                                                  >  2:4872621/1‑93 (MQ=18)
     gATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑gggggg                                                                  <  2:5893556/93‑1 (MQ=18)
       tACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCGCGATGAGTAGGGCGGGCCACGTGGTATCCTGTCTGAATAT‑‑gggggggg                                                                <  2:6070841/93‑2 (MQ=11)
         cAGGGTGACAGCCCCGTACTCAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGG‑c‑‑c                                                           >  2:6273733/1‑93 (MQ=255)
                  aGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCa                                                   >  1:3116169/1‑93 (MQ=11)
                   gCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCaa                                                  >  1:5712588/1‑93 (MQ=14)
                   gCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGG‑C‑‑CATCCTCCAAg                                                 >  2:1588095/1‑93 (MQ=255)
                    ccccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGG‑G‑‑CATCCTCCAAgg                                                >  1:1445065/1‑93 (MQ=255)
                     cccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAgg                                                >  2:2155459/1‑93 (MQ=14)
                     cccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CAGCCTCCAAgg                                                >  2:311875/1‑93 (MQ=11)
                      cccaacacAAAAATGCACATATTGTGAGCCCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGG‑GG‑CATCCTCCAAGGc                                               <  2:6075164/89‑1 (MQ=14)
                      ccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CCTCCTCCAAGGc                                               >  2:1473406/1‑93 (MQ=11)
                      ccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAggt                                               >  1:3913488/1‑92 (MQ=14)
                      ccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGc                                               >  2:931274/1‑93 (MQ=14)
                       cGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCt                                              >  1:645120/1‑93 (MQ=14)
                       cGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCt                                              >  1:2460808/1‑93 (MQ=14)
                       cGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCt                                              >  2:4858622/1‑93 (MQ=14)
                        gTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGGGG‑G‑‑CATCCTCCAAGGCt                                              >  1:2038145/1‑93 (MQ=14)
                        gTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTa                                             >  2:2122032/1‑93 (MQ=14)
                         tACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTaa                                            >  1:5211382/1‑93 (MQ=14)
                         tACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTaa                                            >  2:4749652/1‑93 (MQ=14)
                         tACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGG‑C‑‑CATCCTCCAAGGCTaaa                                           >  1:839205/1‑93 (MQ=255)
                          acacAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑GATCCTCCAAGGCTaaa                                           >  1:1154549/1‑93 (MQ=14)
                           cgcaAAAATGCGCATATTGTGAGCTCGATGGGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAAt                                          <  2:5922525/91‑1 (MQ=14)
                           cacaAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAAt                                          >  2:3400246/1‑93 (MQ=14)
                           cacaAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAAt                                          <  1:1031130/93‑1 (MQ=11)
                           cacaAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAAt                                          <  2:4814714/93‑1 (MQ=11)
                           cacaAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAAt                                          >  1:866125/1‑93 (MQ=14)
                            acaAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATa                                         <  1:4749652/93‑1 (MQ=11)
                            acaAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATa                                         <  2:4090950/93‑1 (MQ=11)
                            acaAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATa                                         >  1:4006111/1‑93 (MQ=14)
                            aaaaaaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATa                                         <  1:4400753/91‑1 (MQ=11)
                             caAAAATGCACATATTGTGAGCTCGATGAGTAGGGGGGGACCCGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGGG‑‑CATCCTCCAAGGCTAAATAc                                        <  1:83801/93‑1 (MQ=11)
                             caAAAATGCACATATTGTGAGCTCGATGAGTAGGGGGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGG‑GGGCATCCTCCAAGGCTAAATa                                         <  1:2580697/93‑1 (MQ=14)
                             caAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATAc                                        <  1:1430736/93‑1 (MQ=11)
                             caAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATAc                                        >  1:3702383/1‑93 (MQ=14)
                             caAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGGG‑‑CATCCTCCAAGGCTAAATAc                                        <  2:3142469/93‑1 (MQ=14)
                              aaaaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATACt                                       >  1:2787499/1‑93 (MQ=14)
                              aaaaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCCAAATACt                                       >  2:942568/1‑93 (MQ=14)
                                aaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATACTcc                                     <  2:3210058/93‑1 (MQ=11)
                                aaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATACTcc                                     <  1:5279350/93‑1 (MQ=11)
                                aaaTGCACATATGGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATACTCct                                    <  2:376092/93‑1 (MQ=14)
                                 aaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATACTCct                                    <  1:6309823/93‑1 (MQ=11)
                                 aaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATACTCct                                    >  2:69703/1‑93 (MQ=14)
                                 aaTGCACATATTGGGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTTTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATACTCct                                    <  1:1126002/93‑1 (MQ=11)
                                  aTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATACTCctg                                   >  1:1749477/1‑93 (MQ=14)
                                  aTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATACTCctg                                   >  2:1066217/1‑93 (MQ=14)
                                   tGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATACTCctga                                  >  2:1963151/1‑93 (MQ=14)
                                   tGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCCAAATACTCctga                                  >  1:163937/1‑93 (MQ=14)
                                    gCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATACTCctgac                                 >  2:2055587/1‑93 (MQ=14)
                                    gCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATACTCctgac                                 <  1:5881249/93‑1 (MQ=11)
                                    gCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATACTCctgac                                 <  1:1059644/93‑1 (MQ=11)
                                    gCAAATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGG‑GG‑CATCCTCCAAGGCTAAATACTCctgac                                 <  1:3411698/93‑1 (MQ=11)
                                     cacaTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATACTCctgact                                >  1:4647437/1‑93 (MQ=14)
                                     cacaTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGGGG‑‑CATCCTCCAAGGCTAAATACTCctgact                                <  1:1646951/93‑1 (MQ=14)
                                      acaTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATACTCctgactg                               >  1:1616296/1‑93 (MQ=14)
                                      acaTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATACTCctgactg                               >  2:231021/1‑93 (MQ=14)
                                      acaTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATACTCctgactg                               >  2:5906840/1‑93 (MQ=14)
                                      acaTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATACTCctgactg                               >  2:5413094/1‑93 (MQ=14)
                                      acaTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATACTCctgactg                               >  2:2803057/1‑93 (MQ=14)
                                       caTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑GATCCCCCAAGGCTAAATACTCccgactga                              >  2:380014/1‑93 (MQ=11)
                                       caTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATACTCctgactga                              >  2:804026/1‑93 (MQ=11)
                                        atatTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGG‑G‑‑GATCCTCCAAGGCTAAATACTCCTGACTCAcc                            >  2:5649042/1‑93 (MQ=14)
                                         tatTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑GATCCTCCAAGGCTAAATACTCCTGACTGAcc                            >  1:310321/1‑93 (MQ=11)
                                         tatTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATACTCCTGACTGAcc                            <  1:5802105/93‑1 (MQ=11)
                                         tatTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGG‑C‑‑CATCCTCCAAGGCTTAATACTCCTGACTGACCg                           >  1:3999151/1‑93 (MQ=255)
                                          gttGTGAGCTCGAGGAGTGGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATACTCCTGACTGACCg                           <  1:4797222/92‑1 (MQ=11)
                                          atTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATACTCCTGACTGACCg                           >  1:4313942/1‑93 (MQ=11)
                                           ttGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATACTCCTGACTGACCGa                          <  1:3443664/93‑1 (MQ=11)
                                           ttGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATACTCCTGACTGACCGa                          >  1:410944/1‑93 (MQ=11)
                                           ttGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATG‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATACTCCTGACTGACCGa                          >  1:1974852/1‑93 (MQ=11)
                                              tgAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGG‑G‑‑CATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGt                      <  1:3111072/93‑1 (MQ=255)
                                                               gCGGGACACGTGGTCTCCTGTCTGAATAT‑‑GGGGGGGG‑C‑‑CATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTggag     >  2:4683291/1‑90 (MQ=11)
                                                                 gggACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGG‑C‑‑CATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGa   <  1:4610222/93‑1 (MQ=16)
                                                                  ggACACGTGGTATCCTGTCTGAATAT‑‑GGGGGGGG‑C‑‑CATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGaa  <  2:4932633/93‑1 (MQ=16)
                                                                                            |                                                                       
CGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑‑GGGAGGGA‑C‑‑CATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAA  >  NC_000913/3941639‑3941797

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A