Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,957,124 |
+G |
intergenic (+58/+26) |
ilvC → / ← ppiC |
ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,957,123 | 1 | . | G | 100.0%
| 411.4
/ NA
| 138 | intergenic (+57/+27) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (29/109); total (29/109) |
Only 100 of 157 total aligned reads displayed.
ACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTC > NC_000913/3957034‑3957210
|
aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AA‑g < 1:887407/93‑1 (MQ=21)
aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AA‑g < 2:4377297/93‑1 (MQ=21)
aGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AA‑ggc < 1:1372736/93‑3 (MQ=21)
aGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AA‑ggc < 1:1742423/93‑3 (MQ=21)
gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AA‑ggcc < 1:4121677/93‑4 (MQ=21)
gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AA‑ggcc < 1:4012728/93‑4 (MQ=21)
atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCGCCC‑‑CTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AA‑ggcct < 1:2712250/93‑5 (MQ=18)
atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AA‑ggcct < 2:2699497/93‑5 (MQ=21)
atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AA‑ggcct < 2:1808711/93‑5 (MQ=21)
atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTtc < 1:2564999/93‑1 (MQ=18)
atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTtc < 2:4637564/93‑1 (MQ=18)
tGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTtct < 1:588495/93‑1 (MQ=18)
tGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTtct < 2:2232779/93‑1 (MQ=18)
gAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑GCCCCCCCCCC‑‑ACCCCCTCCCCCAGGGAGG‑GGGGGGAAAAACACC‑AA‑GCCTtctc > 2:4178203/1‑93 (MQ=255)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTcc < 1:3022892/93‑1 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTcc < 1:5310967/93‑1 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTcc < 1:3984888/93‑1 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTcc < 2:2733762/93‑1 (MQ=18)
agcGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCt < 2:4410208/91‑1 (MQ=18)
aaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCt < 2:6190842/93‑1 (MQ=18)
aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTg < 2:5499573/93‑1 (MQ=18)
aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTg < 2:1435860/93‑1 (MQ=18)
gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGga < 2:1198453/93‑1 (MQ=18)
gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGga < 2:5986190/93‑1 (MQ=18)
gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGga < 1:5484173/93‑1 (MQ=18)
gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGga < 2:4782149/93‑1 (MQ=18)
aTTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGgaga < 1:3421703/93‑1 (MQ=18)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGaa < 1:45248/93‑1 (MQ=18)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGaa < 2:5058074/93‑1 (MQ=18)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGaa < 1:1757764/93‑1 (MQ=18)
gCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAgg < 2:6044800/93‑1 (MQ=18)
tGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGcc < 2:6393634/93‑1 (MQ=18)
tGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGcc < 2:4117111/93‑1 (MQ=18)
gTTGCGGGTTAAGTGCGCGCTGATGGCCCCCCCCCCCC‑‑C‑‑CCCTCCCCCCCGGGGAGGGGGGAAAAAAA‑CC‑AA‑GGCTTCTCCTCGAGAAGGGCt > 2:5095223/1‑93 (MQ=255)
gTTGCGGGTTAAGTGCGCGCTGATG‑‑CTCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCt < 2:5221560/93‑1 (MQ=18)
gTTGCGGGTTAAGTGCGCGCTGATG‑‑CCTTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCt < 2:532898/93‑1 (MQ=18)
gTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCt < 2:2025285/93‑1 (MQ=18)
gTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCt < 1:1140833/93‑1 (MQ=18)
ttGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCtt < 1:5007664/93‑1 (MQ=18)
ttGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCtt < 2:1560783/93‑1 (MQ=18)
gCGGGTTAAGTGCGCGCTGATG‑‑CCCTCGCCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGc < 1:2344461/93‑1 (MQ=18)
gTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTAtt < 2:462216/93‑1 (MQ=18)
gtAAGTGCGCGCTGATG‑‑CCCTCCCCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTa < 1:5562946/92‑1 (MQ=18)
tAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAg < 1:4126664/93‑1 (MQ=18)
tGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGc < 1:3651496/93‑1 (MQ=21)
cgcgcTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCgg < 2:2297614/93‑1 (MQ=21)
gcgcTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGt < 2:1051163/93‑1 (MQ=21)
cgcTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTa < 1:5349583/93‑1 (MQ=21)
cTGATG‑‑CCCTCCCCCCGCCC‑‑CTCGCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa < 1:4865562/93‑1 (MQ=21)
cTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCCCAGGGGGA‑GGGGGAAAACAC‑TCAAA‑GGCTTCTCCTGGAGAAAGCCCTGCTATTAGTTGCGGGACa > 2:3142893/1‑93 (MQ=16)
cTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TCAAA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa > 2:6441636/1‑93 (MQ=21)
gATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGc < 1:4527920/93‑1 (MQ=25)
tG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAc < 1:3480312/93‑1 (MQ=25)
g‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAcc < 2:2351151/93‑1 (MQ=25)
ccccGCACCCCG‑‑ACCCTCCCCCAGAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAcc < 2:9213/92‑1 (MQ=25)
tCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa < 1:872638/93‑1 (MQ=37)
tCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa < 2:756151/93‑1 (MQ=37)
tCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGACTTGCTATTAGTTGCGGTACAGCACCTTaa > 2:6021183/1‑93 (MQ=25)
cACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat < 2:4218741/93‑1 (MQ=37)
gaccctctCCCACAGGGAGA‑GGGAGAAAAAAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAtgtg > 1:2178650/5‑93 (MQ=38)
ca‑‑CTCTCCCACGGGGAGC‑GGGGGAAAACAC‑TC‑AAGGCCTTCTCCCGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATCTGat > 2:4063097/2‑93 (MQ=255)
accctctCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGa > 1:3221755/4‑93 (MQ=255)
accctctCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGCACAGCACCTTAATGATGTGa > 2:4569454/4‑93 (MQ=38)
ccctctCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGat > 1:3360377/3‑93 (MQ=255)
cctctCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGata > 1:1278322/2‑93 (MQ=255)
cctctCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGata < 2:5739236/92‑1 (MQ=255)
cctctCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGata < 1:483848/92‑1 (MQ=255)
ctctCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGatat > 2:776574/1‑93 (MQ=255)
ctctCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGatat < 1:3762112/93‑1 (MQ=255)
ctctCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGatat > 2:6453087/1‑93 (MQ=255)
tctcCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATc < 1:6111781/93‑1 (MQ=255)
tctcCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATc < 2:5906961/93‑1 (MQ=255)
tctcCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATc < 1:3864680/93‑1 (MQ=255)
tctcCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATc < 1:3476236/93‑1 (MQ=255)
tctcCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATc > 1:2012738/1‑93 (MQ=255)
ctcCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATcc < 2:2855434/93‑1 (MQ=255)
ctcCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATcc < 2:1020554/93‑1 (MQ=255)
ctcCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATcc > 2:5823740/1‑93 (MQ=255)
ccACAGGGAGA‑GGGAGAAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGaa < 2:1451211/93‑1 (MQ=255)
gggaga‑gggagaAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTggg < 2:4050054/93‑1 (MQ=255)
ggaga‑gggagaAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGgt < 1:1329721/93‑1 (MQ=255)
ggaga‑gggagaAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGgt < 1:5819202/93‑1 (MQ=255)
gaga‑gggagaAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGgtg < 2:2881467/93‑1 (MQ=255)
gaga‑gggagaAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGgtg < 1:5801379/93‑1 (MQ=255)
aga‑gggagaAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGgtgt < 2:3539664/93‑1 (MQ=255)
aga‑gggagaAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGgtgt < 1:6245291/93‑1 (MQ=255)
ga‑gggagaAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGtgtg < 2:2020453/93‑1 (MQ=255)
a‑gggagaAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGc < 2:5408754/93‑1 (MQ=255)
gggagaAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCa > 2:1877191/1‑93 (MQ=255)
gggagaAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCa > 2:3521338/1‑93 (MQ=255)
gagaAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGc < 2:318345/93‑1 (MQ=255)
agaAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCg > 1:254637/1‑93 (MQ=255)
gaAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCgg < 2:5831694/93‑1 (MQ=255)
gaAAACAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCgg > 2:1668000/1‑93 (MQ=255)
aaCAC‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGcc > 2:1565776/1‑93 (MQ=255)
acac‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCg > 2:4531224/1‑93 (MQ=255)
cac‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCgg > 2:632888/1‑93 (MQ=255)
ac‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGt < 2:2186382/93‑1 (MQ=255)
ac‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGt < 2:4160539/93‑1 (MQ=255)
c‑TC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTc < 2:2626915/93‑1 (MQ=255)
|
ACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGA‑GGGAGAAAACAC‑TC‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTC > NC_000913/3957034‑3957210
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCA > NC_000913/3957034‑3957217
|
ACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑GG < SRR4302537.893513/94‑1 (MQ=60)
AGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑Ggcc < SRR4302537.1754571/94‑4 (MQ=60)
AGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑Ggcc < SRR4302537.1382320/94‑4 (MQ=60)
GATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCT < SRR4302537.4040827/94‑1 (MQ=60)
GATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCT < SRR4302537.4150451/94‑1 (MQ=60)
ATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGCCC‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTT < SRR4302537.2731192/94‑1 (MQ=57)
ATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTT < SRR4302537.4031443/94‑1 (MQ=60)
ATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCT < SRR4302537.2582970/94‑1 (MQ=60)
TGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTC < SRR4302537.592511/94‑1 (MQ=60)
AAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCT < SRR4302537.5347450/94‑1 (MQ=60)
AAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCT < SRR4302537.1336518/94‑1 (MQ=60)
AAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCT < SRR4302537.4012788/94‑1 (MQ=60)
AAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCT < SRR4302537.3043963/94‑1 (MQ=60)
AACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTG < SRR4302537.5957955/94‑1 (MQ=60)
ACGTATTGCTTGTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGG < SRR4302537.4411433/94‑1 (MQ=37)
GTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAG < SRR4302537.5521611/94‑1 (MQ=60)
ATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAA < SRR4302537.3445920/94‑1 (MQ=60)
TTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAG < SRR4302537.45586/94‑1 (MQ=60)
TTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAG < SRR4302537.1770017/94‑1 (MQ=60)
GTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTT < SRR4302537.3047162/94‑1 (MQ=60)
GTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTT < SRR4302537.825857/94‑1 (MQ=60)
GTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTT < SRR4302537.1148758/94‑1 (MQ=60)
TTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTG < SRR4302537.5042156/94‑1 (MQ=60)
GCGGGTTAAGTGCGCGCTGATGCCCTCGCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCT < SRR4302537.2360972/94‑1 (MQ=60)
GCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCT < SRR4302537.5621029/94‑1 (MQ=60)
GTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTA < SRR4302537.3891514/94‑1 (MQ=60)
TTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAG < SRR4302537.3449771/94‑1 (MQ=60)
GTAAGTGCGCGCTGATGCCCTCCCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAG < SRR4302537.5600966/94‑1 (MQ=57)
TAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGT < SRR4302537.4155467/94‑1 (MQ=60)
TGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCG < SRR4302537.3677202/94‑1 (MQ=60)
CGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGT < SRR4302537.4062276/94‑1 (MQ=60)
CGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGT < SRR4302537.2350842/94‑1 (MQ=60)
CGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAC < SRR4302537.5386233/94‑1 (MQ=60)
CTGATGCCCTCCCCCCGCCC‑‑CTCGCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAG < SRR4302537.4899134/94‑1 (MQ=60)
CTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAG < SRR4302537.2640608/94‑1 (MQ=60)
GATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCA < SRR4302537.4559272/94‑1 (MQ=60)
GATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCA < SRR4302537.3413574/94‑1 (MQ=60)
TGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACC < SRR4302537.3504934/94‑1 (MQ=60)
CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTT < SRR4302537.498429/94‑1 (MQ=60)
TCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT < SRR4302537.878639/94‑1 (MQ=60)
CACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATG < SRR4302537.3655888/94‑1 (MQ=60)
ACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGA > SRR4302537.3819242/1‑94 (MQ=60)
ACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGA > SRR4302537.4269380/1‑94 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAT < SRR4302537.4751761/94‑1 (MQ=60)
cccccgaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGA < SRR4302537.136976/85‑1 (MQ=60)
CCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATG > SRR4302537.3223157/1‑94 (MQ=60)
CCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATG < SRR4302537.6210404/94‑1 (MQ=60)
CCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATG > SRR4302537.2597752/1‑94 (MQ=60)
ccccgcccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAT < SRR4302537.5513037/86‑1 (MQ=60)
CCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGT < SRR4302537.1003817/94‑1 (MQ=60)
CCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGT < SRR4302537.4107555/94‑1 (MQ=60)
ccgcccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGT < SRR4302537.1190623/88‑1 (MQ=60)
cgaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTG < SRR4302537.5763625/89‑1 (MQ=60)
cgaccCTCTCCCACAGGGAGAGGGAGAAAAAACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTG > SRR4302537.2194005/6‑94 (MQ=60)
gaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGA > SRR4302537.4852543/5‑94 (MQ=60)
gaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGA > SRR4302537.3244426/5‑94 (MQ=60)
accCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGAT > SRR4302537.3384178/4‑94 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATAT < SRR4302537.487163/94‑1 (MQ=60)
ccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATA > SRR4302537.1287206/3‑94 (MQ=60)
CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC > SRR4302537.2026767/1‑94 (MQ=60)
CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC < SRR4302537.3788529/94‑1 (MQ=60)
TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCC < SRR4302537.3500836/94‑1 (MQ=60)
TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCC < SRR4302537.6153781/94‑1 (MQ=60)
TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCC < SRR4302537.3891732/94‑1 (MQ=60)
CCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAAC > SRR4302537.5914776/1‑94 (MQ=60)
GGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGT < SRR4302537.1989825/94‑1 (MQ=60)
GGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTG < SRR4302537.1338990/94‑1 (MQ=60)
GGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTG < SRR4302537.5859084/94‑1 (MQ=60)
GAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGT < SRR4302537.5841149/94‑1 (MQ=60)
GAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGT > SRR4302537.5129274/1‑94 (MQ=60)
AGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTG < SRR4302537.6288207/94‑1 (MQ=60)
GAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCG > SRR4302537.256444/1‑94 (MQ=60)
AAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCC > SRR4302537.1488998/1‑94 (MQ=60)
ACTCAAGGCCTTCGCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTC < SRR4302537.545988/94‑1 (MQ=60)
TCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGG < SRR4302537.2733873/94‑1 (MQ=60)
TCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGG < SRR4302537.6213171/94‑1 (MQ=60)
TCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGG < SRR4302537.2516566/94‑1 (MQ=60)
CAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGC < SRR4302537.1673943/94‑1 (MQ=60)
aagGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCT > SRR4302537.4767551/4‑94 (MQ=60)
AG‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTC > SRR4302537.2051067/1‑94 (MQ=60)
G‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCC < SRR4302537.77629/94‑1 (MQ=60)
G‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGGGTGCAGCGGGCCGGTCGGCTCC > SRR4302537.609524/1‑94 (MQ=60)
GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCA < SRR4302537.2227092/94‑1 (MQ=60)
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ACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCA > NC_000913/3957034‑3957217
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
