Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑T‑‑‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGT  >  NC_000913/3268036‑3268221

CGCTCTTACCGCACCCTTTGACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGGT‑‑T‑‑‑CCCCCCC                                                                                              >  SRR4302537.1729969/1‑94 (MQ=60)

CGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑T‑‑‑CCCCCCC                                                                                              <  SRR4302537.3630416/94‑1 (MQ=60)

  CTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑T‑‑‑CCCCCCCcc                                                                                            <  SRR4302537.2940849/94‑3 (MQ=60)

    CTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCAGCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑T‑‑‑CCCCCCCccag                                                                                          <  SRR4302537.5097388/94‑5 (MQ=60)

     TTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑T‑‑‑CCCCCCCccagg                                                                                         <  SRR4302537.981451/94‑6 (MQ=60)

     TTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑T‑‑‑CCCCCCCccagg                                                                                         <  SRR4302537.5896152/94‑6 (MQ=60)

     TTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑T‑‑‑CCCCCCCccaag                                                                                         >  SRR4302537.4937310/1‑89 (MQ=60)

      TACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGC                                                                                          <  SRR4302537.4709944/94‑1 (MQ=60)

      TACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGC                                                                                          >  SRR4302537.4515492/1‑94 (MQ=60)

      TACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGC                                                                                          >  SRR4302537.6397772/1‑94 (MQ=60)

      TACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGC                                                                                          >  SRR4302537.291962/1‑94 (MQ=60)

      TACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TC‑‑CCCCCCCAGGCG                                                                                         <  SRR4302537.5248834/94‑1 (MQ=60)

       ACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGGTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCG                                                                                         >  SRR4302537.2768063/1‑94 (MQ=60)

         CGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTT                                                                                       >  SRR4302537.1913868/1‑94 (MQ=60)

         CGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTT                                                                                       <  SRR4302537.5779879/94‑1 (MQ=60)

         CGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTT                                                                                       <  SRR4302537.3404812/94‑1 (MQ=60)

          GCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTA                                                                                      >  SRR4302537.5154633/1‑94 (MQ=60)

          CCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTA                                                                                      <  SRR4302537.4377776/94‑1 (MQ=60)

           CACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTAC                                                                                     >  SRR4302537.4965452/1‑94 (MQ=60)

           CACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTAC                                                                                     <  SRR4302537.4364457/94‑1 (MQ=60)

            CCCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACC                                                                                    <  SRR4302537.738782/94‑1 (MQ=60)

             CCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TC‑‑CCCCCCCAGGCGTTACCTG                                                                                  <  SRR4302537.466868/94‑1 (MQ=60)

              CCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTG                                                                                  <  SRR4302537.1117447/94‑1 (MQ=60)

               CTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGG                                                                                 >  SRR4302537.4045860/1‑94 (MQ=60)

                   CACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACC                                                                             >  SRR4302537.5344988/1‑94 (MQ=60)

                    ACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCC                                                                            >  SRR4302537.3189588/1‑94 (MQ=60)

                    ACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGGT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCC                                                                            >  SRR4302537.2421899/1‑94 (MQ=60)

                     CCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCG                                                                           >  SRR4302537.5777062/1‑94 (MQ=60)

                      CCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTG                                                                          >  SRR4302537.669037/1‑94 (MQ=60)

                       CTTACCTTATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGGT‑‑TCC‑CCCCCCCAGGCGGTACCTGGCACCCCGC                                                                         >  SRR4302537.5463301/1‑94 (MQ=60)

                         TACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCC                                                                       >  SRR4302537.1713795/1‑94 (MQ=60)

                         TACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCC                                                                       <  SRR4302537.3801061/94‑1 (MQ=60)

                           CCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TC‑‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTAT                                                                    <  SRR4302537.1780556/94‑1 (MQ=60)

                            CTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTTCCC‑‑‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTAT                                                                    <  SRR4302537.2916144/94‑1 (MQ=60)

                            CTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTAT                                                                    <  SRR4302537.4184682/94‑1 (MQ=60)

                            CTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTAT                                                                    >  SRR4302537.6494022/1‑94 (MQ=60)

                             TGATCCCGCTTGCGCGGGCCATCGGCGGTTTGTTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATG                                                                   <  SRR4302537.2882403/94‑1 (MQ=60)

                             TGATCCCGCTTGCGCGGGCCATCGGCGGGTTGCTCTCTGTTGCACTGGTCGTGGGGT‑‑T‑‑‑CCCCCCCcccagcttttccttgtaccctgccctatg                                                                 >  SRR4302537.4664656/1‑65 (MQ=60)

                              GATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGG                                                                  <  SRR4302537.2860090/94‑1 (MQ=60)

                              GATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGG                                                                  <  SRR4302537.1580567/94‑1 (MQ=60)

                               ATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGA                                                                 >  SRR4302537.111588/1‑94 (MQ=60)

                               ATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGA                                                                 <  SRR4302537.163710/94‑1 (MQ=60)

                               ATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGA                                                                 <  SRR4302537.4078278/94‑1 (MQ=60)

                                TCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTTGCACCCCGCCCCATGGAG                                                                >  SRR4302537.6070707/1‑94 (MQ=60)

                                TCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAG                                                                >  SRR4302537.3524666/1‑94 (MQ=60)

                                 CCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCG‑CCCCCCCAGGCGTTACGCGGCACCCTGCCCCATAGAGC                                                               >  SRR4302537.2612623/1‑94 (MQ=60)

                                 CCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGC                                                               >  SRR4302537.4922211/1‑94 (MQ=60)

                                 CCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGC                                                               <  SRR4302537.5427150/94‑1 (MQ=60)

                                  CCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCC                                                              <  SRR4302537.5153172/94‑1 (MQ=60)

                                    GCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCG                                                            >  SRR4302537.5823042/1‑94 (MQ=60)

                                      TTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGA                                                          >  SRR4302537.3638257/1‑94 (MQ=60)

                                         CGCGGCCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTT                                                       <  SRR4302537.5585243/94‑1 (MQ=60)

                                          GCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCCCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTT                                                       <  SRR4302537.3639070/94‑1 (MQ=60)

                                               CCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCC                                                 <  SRR4302537.3097380/94‑1 (MQ=60)

                                               CCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCC                                                 >  SRR4302537.2174023/1‑94 (MQ=60)

                                               CCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCC                                                 >  SRR4302537.677249/1‑94 (MQ=60)

                                                CATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCC                                                >  SRR4302537.3693577/1‑94 (MQ=60)

                                                 ATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TC‑‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCT                                              <  SRR4302537.3349723/94‑1 (MQ=60)

                                                   CGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTC                                             <  SRR4302537.335576/94‑1 (MQ=60)

                                                    GGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCC                                            <  SRR4302537.2402994/94‑1 (MQ=60)

                                                     GCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCG                                           <  SRR4302537.4711513/94‑1 (MQ=60)

                                                      CGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGC                                          >  SRR4302537.2608693/1‑94 (MQ=60)

                                                        GTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCC                                        >  SRR4302537.623916/1‑94 (MQ=60)

                                                        GTTTGCTCTCTATTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCC                                        <  SRR4302537.2782609/94‑1 (MQ=60)

                                                         TTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCG                                       <  SRR4302537.2798307/94‑1 (MQ=60)

                                                            GCTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCT                                    <  SRR4302537.2973491/94‑1 (MQ=60)

                                                             CTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTC                                   >  SRR4302537.498524/1‑94 (MQ=60)

                                                             CTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTC                                   <  SRR4302537.889155/94‑1 (MQ=60)

                                                             CTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTC                                   >  SRR4302537.820147/1‑94 (MQ=60)

                                                             CTCTCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTC                                   >  SRR4302537.6178636/1‑94 (MQ=60)

                                                                TCTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCC                                >  SRR4302537.574970/1‑94 (MQ=60)

                                                                 CTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCC                               >  SRR4302537.1903603/1‑94 (MQ=60)

                                                                 CTGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCC                               >  SRR4302537.3732171/1‑94 (MQ=60)

                                                                  TGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCG                              >  SRR4302537.5009827/1‑94 (MQ=60)

                                                                  TGTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCG                              >  SRR4302537.447557/1‑94 (MQ=60)

                                                                   GTTGCACTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGA                             >  SRR4302537.429686/1‑94 (MQ=60)

                                                                     TGCACGGGTCGT‑GGTT‑‑TCCCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAG                           <  SRR4302537.4437975/94‑1 (MQ=60)

                                                                         CTGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGA                       <  SRR4302537.488058/94‑1 (MQ=60)

                                                                          TGGTCGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGAC                      <  SRR4302537.2919189/94‑1 (MQ=60)

                                                                              CGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACG                  >  SRR4302537.944088/1‑94 (MQ=60)

                                                                              CGTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACG                  >  SRR4302537.883387/1‑94 (MQ=60)

                                                                               GTGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGA                 >  SRR4302537.497740/1‑94 (MQ=60)

                                                                                TGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGAC                <  SRR4302537.1254063/94‑1 (MQ=60)

                                                                                TGGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGAC                <  SRR4302537.4367125/94‑1 (MQ=60)

                                                                                 GGGTT‑‑TCC‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACG               <  SRR4302537.4493349/94‑1 (MQ=60)

                                                                                   tgggttcccCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGTACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGAC                <  SRR4302537.4582224/85‑1 (MQ=60)

                                                                                   tggatttccCCCCCCCAGGCGTTACCTGGCGCCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGAC                <  SRR4302537.3155402/85‑1 (MQ=60)

                                                                                   ggggttcccCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGAC                <  SRR4302537.1158136/85‑1 (MQ=60)

                                                                                     gttttccgcaCCCCAGGCGTTACCTGGCACCCTGCCCTATGGATCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGA              <  SRR4302537.6200110/84‑1 (MQ=60)

                                                                                         tccCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCG          <  SRR4302537.4169260/91‑1 (MQ=60)

                                                                                          ccCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGG         <  SRR4302537.2731429/92‑1 (MQ=60)

                                                                                          ccCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGG         <  SRR4302537.4112607/92‑1 (MQ=60)

                                                                                            CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCG       >  SRR4302537.819554/1‑94 (MQ=60)

                                                                                              CCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGAC     <  SRR4302537.695793/94‑1 (MQ=60)

                                                                                              CCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCACGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGAC     >  SRR4302537.4696957/1‑94 (MQ=60)

                                                                                                CCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTG   <  SRR4302537.2771180/94‑1 (MQ=60)

                                                                                                 CCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCACGTCTCCCCCGAAGAGGACGACGACGAAGgcgcgactga  >  SRR4302537.1757527/1‑84 (MQ=60)

CGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTT‑‑T‑‑‑CCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGT  >  NC_000913/3268036‑3268221

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`