Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
744 |
338.8 |
17650688 |
97.8% |
17262372 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,421,120 |
Δ1 bp |
noncoding (60/121 nt) |
rrfF ← |
5S ribosomal RNA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,421,119 | 0 | G | . | 95.4%
| 337.9
/ 17.4
| 131 | noncoding (61/121 nt) | rrfF | 5S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base G (1/5); new base . (51/73); total (52/79) |
| Fisher's exact test for biased strand distribution p-value = 4.01e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.17e-02 |
Only 100 of 143 total aligned reads displayed.
CAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAA > NC_000913/3421027‑3421207
|
cAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTAcggcg > 2:5750409/1‑93 (MQ=255)
gTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTAcggcgtt < 2:8009647/93‑3 (MQ=38)
gTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTAcggcgtt < 2:2268481/93‑3 (MQ=38)
gTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGCAGACCCCACACTACCATCGGCGCTAcggcgtt > 2:5102478/1‑91 (MQ=255)
tCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGttt > 2:8734290/1‑93 (MQ=37)
tCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGttt > 2:439180/1‑93 (MQ=255)
cTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTGCTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGtttc < 2:8532461/93‑2 (MQ=255)
cTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGtttc < 1:1002946/93‑2 (MQ=25)
cTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGtttc < 1:6182351/93‑2 (MQ=25)
ttCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCa > 2:1240379/1‑93 (MQ=255)
tCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCAc < 2:2040525/93‑1 (MQ=16)
tCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCAc < 2:5533013/93‑1 (MQ=16)
tCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCAc < 1:1358490/93‑1 (MQ=16)
ccGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACt < 1:3251618/93‑1 (MQ=12)
cGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACtt < 1:1583355/93‑1 (MQ=9)
cGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACtt > 1:5158715/1‑93 (MQ=16)
gACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTc > 1:3094517/1‑93 (MQ=16)
gACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTc > 2:6548950/1‑93 (MQ=16)
cTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTg < 2:4020845/93‑1 (MQ=9)
cTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTg > 2:5482347/1‑93 (MQ=12)
tGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGa > 1:7214148/1‑93 (MQ=12)
gAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAg > 2:232909/1‑93 (MQ=16)
gAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAg < 1:6950724/93‑1 (MQ=9)
aGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGt > 1:2395433/1‑93 (MQ=9)
aGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGt < 1:7122365/93‑1 (MQ=9)
ccTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTc < 1:4822254/93‑1 (MQ=9)
ccTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTc < 2:4461860/93‑1 (MQ=9)
ccTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTc > 2:4654056/1‑93 (MQ=12)
ccTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTc < 1:2257449/93‑1 (MQ=9)
cTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCg > 1:7030564/1‑93 (MQ=12)
cTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCg < 1:8174847/93‑1 (MQ=9)
cTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCg > 1:4573139/1‑93 (MQ=9)
ttttGTTTTATTTGATGTCTGGCAGTTCGCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCgg > 2:8618342/1‑93 (MQ=255)
ttttGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCgg > 1:4449708/1‑93 (MQ=12)
ttttGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCgg < 2:7498198/93‑1 (MQ=9)
ttttGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCgg > 1:1675930/1‑93 (MQ=9)
ttttGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCgg > 1:5288192/1‑93 (MQ=9)
ttttGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCgg < 2:7498197/93‑1 (MQ=9)
tttGTTTTATTTGATGTCTGGCAGTTCCCTGCTCGCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTTACTTCTGAGTTCGGc < 2:3126402/93‑1 (MQ=11)
tttGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGc < 2:2038880/93‑1 (MQ=9)
ttGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCa > 1:4074897/1‑93 (MQ=0)
aTTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTAcggcgtt > 1:8523923/1‑66 (MQ=14)
cccaccccacCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCttt < 1:3407766/93‑1 (MQ=1)
cccACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCttt < 2:4328950/93‑1 (MQ=0)
cccACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCttt < 1:3133796/93‑1 (MQ=9)
ccACACTACCATCGGCGCTACGGCTG‑TTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCCCCGCGCTACTGCCGCCAGACAAATTCtttt < 2:5816971/93‑1 (MQ=11)
ccACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCtttt < 2:553069/93‑1 (MQ=9)
ccACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCtttt > 2:3287552/1‑93 (MQ=9)
ccACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCtttt < 2:5816970/93‑1 (MQ=12)
ccACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCtttt > 2:2654300/1‑93 (MQ=9)
cacaCTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCttttt > 1:4880955/1‑92 (MQ=0)
cacaCTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTc > 1:6420138/1‑93 (MQ=12)
cacaCTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTc < 1:6385173/93‑1 (MQ=16)
cacaCTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTc < 2:2676151/93‑1 (MQ=12)
ccacTCCCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCt < 2:7634072/92‑1 (MQ=255)
acacTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCt > 2:7910474/1‑93 (MQ=16)
acacTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCt < 1:1192411/93‑1 (MQ=16)
acacTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCt < 1:105868/93‑1 (MQ=16)
acacTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCt > 1:6825045/1‑93 (MQ=16)
cccTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTa < 2:5865129/91‑1 (MQ=255)
cacTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTa > 1:5543786/1‑93 (MQ=19)
cacTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTa < 1:8404501/93‑1 (MQ=19)
ccTACCATCGTCGCTCCGGC‑GTTTCACTTCTGAGTTCGGCATGCGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTaa < 2:5086579/92‑1 (MQ=11)
acTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTaa < 2:4485123/93‑1 (MQ=255)
cTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGCCCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAAt < 1:4299808/93‑1 (MQ=255)
cTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAAt < 1:5655045/93‑1 (MQ=255)
cTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAAt < 1:6804222/93‑1 (MQ=255)
cTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAAt < 2:5381745/93‑1 (MQ=255)
tACCATCGGCGCTGCGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATc < 1:2450322/93‑1 (MQ=255)
tACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATc < 1:6300092/93‑1 (MQ=255)
tACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATc < 2:2770110/93‑1 (MQ=255)
tACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATc < 2:1391938/93‑1 (MQ=255)
aacATCGGCGATACGG‑AGTTTCACTTCAGAGTACGGAATGGGGAAAGGTGGGACAACCGCGCTAATGCCGACAGACAAATTCTTTTCTAATCt < 1:7818840/91‑1 (MQ=255)
aCCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCt < 1:1160364/93‑1 (MQ=255)
aCCATCGGCGCTACGGC‑GTTTCACTTCTGAGTGCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCGAATCt < 1:307424/93‑1 (MQ=11)
aCCATCGGCGCTACGAC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACTAATTCTTTTCTAATCt < 2:7843763/93‑1 (MQ=14)
cATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGc < 1:6452120/93‑1 (MQ=255)
cATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGc > 1:603645/1‑93 (MQ=255)
aTCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGcc < 1:3000064/93‑1 (MQ=255)
aTCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGcc < 2:4901592/93‑1 (MQ=255)
tCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCg > 1:3834398/1‑93 (MQ=255)
ggCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGaa < 1:5703247/93‑1 (MQ=255)
ggCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGaa > 2:6432557/1‑93 (MQ=255)
gcgcTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAAc < 1:2186153/93‑1 (MQ=255)
gcgcTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAAc < 1:6372187/93‑1 (MQ=255)
gcgcTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAAc < 2:5935589/93‑1 (MQ=255)
cgcTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACt < 2:275653/93‑1 (MQ=255)
cgcTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACt < 1:7235296/93‑1 (MQ=255)
gcTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGCAcct > 2:4935821/1‑91 (MQ=14)
gcTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACtt > 2:3589707/1‑93 (MQ=255)
gcTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACtt > 1:2888955/1‑93 (MQ=255)
cTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACttt > 1:1758842/1‑93 (MQ=255)
cTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACttt < 2:8540878/93‑1 (MQ=255)
tACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGGCAAATTCTTTTCTAATCTGCCGAACTTTa > 2:8170282/1‑93 (MQ=255)
tACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTa > 2:3653257/1‑93 (MQ=255)
tACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATATGCCGACCTTTa > 2:8234859/1‑93 (MQ=14)
aCGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTATTCTGCCGATCTTTaa > 2:6515929/1‑93 (MQ=14)
aCGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTaa < 2:2451468/93‑1 (MQ=255)
aCGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTaa < 2:8296668/93‑1 (MQ=255)
aCGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTaa < 1:8405156/93‑1 (MQ=255)
|
CAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAA > NC_000913/3421027‑3421207
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGGTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAA > NC_000913/3421028‑3421213
|
AGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTT > SRR4302541.5811269/1‑94 (MQ=34)
CTTCCTACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTT‑CA > SRR4302541.2291165/1‑94 (MQ=11)
CTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTT‑CA < SRR4302541.1012259/94‑1 (MQ=22)
CTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTT‑CA < SRR4302541.118495/94‑1 (MQ=22)
CTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTT‑CA < SRR4302541.6245513/94‑1 (MQ=22)
TCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTT‑CACT < SRR4302541.1371904/94‑1 (MQ=9)
CCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTT‑CACTT < SRR4302541.3284438/94‑1 (MQ=7)
CCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTT‑CACTT > SRR4302541.5211787/1‑94 (MQ=7)
CGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTT‑CACTTC > SRR4302541.3125895/1‑94 (MQ=4)
CGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTT‑CACTTC > SRR4302541.5462957/1‑94 (MQ=4)
CGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTT‑CACTTC < SRR4302541.1599156/94‑1 (MQ=4)
CTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGA > SRR4302541.7291112/1‑94 (MQ=4)
GAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGT > SRR4302541.2418880/1‑94 (MQ=4)
GAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGT < SRR4302541.7024856/94‑1 (MQ=4)
AGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTT < SRR4302541.7198234/94‑1 (MQ=4)
GCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTC < SRR4302541.7628045/94‑1 (MQ=4)
GCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGCAGACCCCACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTC < SRR4302541.5154904/94‑1 (MQ=4)
CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCG < SRR4302541.2279251/94‑1 (MQ=4)
CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCG > SRR4302541.7105312/1‑94 (MQ=4)
CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCG > SRR4302541.4619457/1‑94 (MQ=4)
CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCG > SRR4302541.7105313/1‑94 (MQ=4)
CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCG < SRR4302541.4871410/94‑1 (MQ=4)
CTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGG > SRR4302541.4494461/1‑94 (MQ=4)
CTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGG < SRR4302541.8264108/94‑1 (MQ=4)
CTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGG > SRR4302541.1692431/1‑94 (MQ=4)
CTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGG > SRR4302541.5342642/1‑94 (MQ=4)
TTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCA > SRR4302541.4115119/1‑94 (MQ=0)
TTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCAT > SRR4302541.7979873/1‑94 (MQ=0)
CCCCACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTT > SRR4302541.2511067/1‑94 (MQ=0)
CCCACCCCACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTT < SRR4302541.3441779/94‑1 (MQ=0)
CCCACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTT < SRR4302541.3165461/94‑1 (MQ=0)
CCCACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTT < SRR4302541.6331680/94‑1 (MQ=0)
CCACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTT > SRR4302541.4930769/1‑94 (MQ=0)
CCACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTC > SRR4302541.8548397/1‑94 (MQ=0)
CCACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTC < SRR4302541.419036/94‑1 (MQ=0)
CCACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTC > SRR4302541.6485591/1‑94 (MQ=0)
CACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCT < SRR4302541.8521083/94‑1 (MQ=1)
CACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCT < SRR4302541.6450375/94‑1 (MQ=1)
CACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCT > SRR4302541.6898084/1‑94 (MQ=1)
ACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTA < SRR4302541.106749/94‑1 (MQ=4)
ACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTA < SRR4302541.1203963/94‑1 (MQ=4)
ACACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTA > SRR4302541.5600543/1‑94 (MQ=4)
CACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAA < SRR4302541.8495417/94‑1 (MQ=6)
CACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAA < SRR4302541.4856365/94‑1 (MQ=6)
ACTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAAT > SRR4302541.3065745/1‑94 (MQ=9)
CTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGCCCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATC < SRR4302541.4342748/94‑1 (MQ=10)
CTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATC < SRR4302541.5712801/94‑1 (MQ=11)
CTACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATC < SRR4302541.6876998/94‑1 (MQ=11)
TACCATCGGCGCTGCGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCT < SRR4302541.2474680/94‑1 (MQ=19)
TACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCT < SRR4302541.6364487/94‑1 (MQ=20)
TACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCT < SRR4302541.1767002/94‑1 (MQ=20)
ACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTG < SRR4302541.1171499/94‑1 (MQ=22)
ACCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTGCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCGAATCTG < SRR4302541.310149/94‑1 (MQ=3)
aacatcggcgatacggaGTTT‑CACTTCAGAGTACGGAATGGGGAAAGGTGGGACAACCGCGCTAATGCCGACAGACAAATTCTTTTCTAATCTA < SRR4302541.7903573/77‑1 (MQ=31)
CCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGC > SRR4302541.8168096/1‑94 (MQ=24)
CCATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGC > SRR4302541.609327/1‑94 (MQ=24)
CATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCC > SRR4302541.1455778/1‑94 (MQ=27)
CATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCC < SRR4302541.6517879/94‑1 (MQ=27)
CATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCC > SRR4302541.6440718/1‑94 (MQ=27)
CATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCC > SRR4302541.2589467/1‑94 (MQ=27)
ATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCG > SRR4302541.3873028/1‑94 (MQ=29)
ATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCG < SRR4302541.3030350/94‑1 (MQ=29)
ATCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCG > SRR4302541.2532870/1‑94 (MQ=29)
TCGGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGA < SRR4302541.7000303/94‑1 (MQ=32)
GGCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAAC < SRR4302541.5761405/94‑1 (MQ=37)
GCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACT < SRR4302541.6437305/94‑1 (MQ=39)
GCGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACT < SRR4302541.2207287/94‑1 (MQ=39)
CGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGCACTT > SRR4302541.1246497/1‑94 (MQ=28)
CGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTT > SRR4302541.2917970/1‑94 (MQ=41)
CGCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTT < SRR4302541.7312466/94‑1 (MQ=41)
GCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTT > SRR4302541.1775978/1‑94 (MQ=44)
GCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTT < SRR4302541.3826829/94‑1 (MQ=44)
GCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTT > SRR4302541.492296/1‑94 (MQ=44)
GCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTT > SRR4302541.691495/1‑94 (MQ=44)
GCTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTT < SRR4302541.8428261/94‑1 (MQ=44)
CTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTA > SRR4302541.6687204/1‑94 (MQ=46)
CTACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTA > SRR4302541.3227159/1‑94 (MQ=46)
ACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAAC < SRR4302541.8496077/94‑1 (MQ=57)
ACGGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAAC > SRR4302541.3506675/1‑94 (MQ=57)
GGC‑GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCT < SRR4302541.3143033/94‑1 (MQ=60)
agcGTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCT < SRR4302541.1337174/91‑1 (MQ=60)
gcGTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCGCCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTA > SRR4302541.1280227/3‑94 (MQ=60)
gcGTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTA > SRR4302541.2212128/3‑94 (MQ=60)
GGTTTGCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTA < SRR4302541.6984075/94‑1 (MQ=60)
GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAA < SRR4302541.337684/94‑1 (MQ=60)
GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAA > SRR4302541.3452089/1‑94 (MQ=60)
GTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAA < SRR4302541.3952191/94‑1 (MQ=60)
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AGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGGTTT‑CACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAA > NC_000913/3421028‑3421213
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
