Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 744 338.8 17650688 97.8% 17262372 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,008,421 +T coding (504/516 nt) b4555 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,008,4211.T100.0% 877.4 / NA 246L168F (TTG→TTT) b4555hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base T (105/141);  total (105/141)

Only 100 of 250 total aligned reads displayed.

TCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AA‑‑‑‑CT‑GGCTACAG‑CTGAAGGATT‑G‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑AAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCT  >  NC_000913/4008346‑4008503
                                                                                         |                                                                                        
tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGtt                                                                                  <  2:2237438/93‑1 (MQ=255)
tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGtt                                                                                  <  2:1392991/93‑1 (MQ=255)
tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGtt                                                                                  <  2:446582/93‑1 (MQ=255)
tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGtt                                                                                  <  1:5033459/93‑1 (MQ=255)
tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGtt                                                                                  <  2:4297949/93‑1 (MQ=255)
 cTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGttt                                                                                 <  2:2845594/93‑2 (MQ=255)
 cTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGttt                                                                                 >  1:3614701/1‑92 (MQ=255)
    gAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGtttggt                                                                              <  1:5805307/93‑5 (MQ=255)
    gAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGtttggt                                                                              <  1:414086/93‑5 (MQ=255)
    gAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGtttggt                                                                              <  2:6064375/93‑5 (MQ=255)
    gAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTt‑‑ttgg                                                                            >  2:6658038/1‑92 (MQ=255)
          aTGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACggg                                                                        >  1:8162548/1‑93 (MQ=255)
           tGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGa                                                                       <  1:4840526/93‑1 (MQ=255)
           tGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGa                                                                       <  2:5721445/93‑1 (MQ=255)
            ggcgggcgGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGAt                                                                      <  2:5785365/93‑1 (MQ=255)
            ggcgggcgGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGAt                                                                      <  1:4509591/93‑1 (MQ=255)
            ggcgggcgCCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGAt                                                                      <  2:421304/93‑1 (MQ=255)
             gcgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATg                                                                     <  1:7587141/93‑1 (MQ=255)
             gcgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATg                                                                     <  1:2455348/93‑1 (MQ=255)
             gcgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATg                                                                     <  1:2829196/93‑1 (MQ=255)
             gcgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑AAGAAGCTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATg                                                                     <  1:8011368/93‑1 (MQ=255)
             gcgggcggCGTGTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATg                                                                     <  2:1244672/93‑1 (MQ=255)
              cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGa                                                                    <  2:2568450/93‑1 (MQ=255)
              cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGa                                                                    <  1:4501072/93‑1 (MQ=255)
               gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGaa                                                                   <  2:497721/93‑1 (MQ=255)
               gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGaa                                                                   <  2:8639006/93‑1 (MQ=255)
                ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAac                                                                  >  2:3824349/1‑93 (MQ=255)
                 gcggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacg                                                                 >  2:3764502/1‑93 (MQ=255)
                 gcggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacg                                                                 <  1:6357237/93‑1 (MQ=255)
                  cggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacga                                                                <  1:2025125/93‑1 (MQ=255)
                  cggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacga                                                                <  1:7747383/93‑1 (MQ=255)
                  cggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacga                                                                >  2:3745720/1‑93 (MQ=255)
                   ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacgac                                                               <  2:6245668/93‑1 (MQ=255)
                   ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacgac                                                               <  1:852079/93‑1 (MQ=255)
                    gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacgacg                                                              >  1:261832/1‑93 (MQ=255)
                     cgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGc                                                             <  1:1235066/93‑1 (MQ=255)
                      gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGcc                                                            <  1:5184870/93‑1 (MQ=255)
                      gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGcc                                                            <  1:8597145/93‑1 (MQ=255)
                      gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGcc                                                            >  2:511017/1‑93 (MQ=255)
                        ttcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGa                                                          >  2:7031658/5‑93 (MQ=255)
                         tcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaa                                                         >  2:6546955/4‑93 (MQ=255)
                          caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa                                                        <  2:412049/91‑1 (MQ=255)
                          caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa                                                        >  1:8442106/3‑93 (MQ=255)
                          caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa                                                        <  1:8777764/91‑1 (MQ=255)
                          caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa                                                        >  1:3273534/3‑93 (MQ=255)
                          caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa                                                        >  2:3401072/3‑93 (MQ=255)
                           aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt                                                       <  1:2240486/92‑1 (MQ=255)
                           aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt                                                       >  2:5855353/2‑93 (MQ=255)
                           aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt                                                       >  2:1868207/2‑93 (MQ=255)
                            aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCGGAAATg                                                      >  1:2685785/1‑93 (MQ=255)
                            aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg                                                      >  1:6726358/1‑93 (MQ=255)
                            aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg                                                      >  2:3569397/1‑93 (MQ=255)
                            aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg                                                      <  1:1458219/93‑1 (MQ=255)
                             aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc                                                     <  2:4556424/93‑1 (MQ=255)
                             aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc                                                     <  1:2171973/93‑1 (MQ=255)
                             aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc                                                     <  1:2268510/93‑1 (MQ=255)
                              aGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt                                                    >  2:5867459/1‑93 (MQ=255)
                              aGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt                                                    <  2:1559508/93‑1 (MQ=255)
                              aGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt                                                    <  2:7935961/93‑1 (MQ=255)
                              aGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt                                                    <  2:7888353/93‑1 (MQ=255)
                              aGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt                                                    >  2:26644/1‑93 (MQ=255)
                                                                actgggCTACAGCCTGAATGATTGG‑ATTGCGTTTGGTGACGCGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATggg                    <  2:5879708/89‑1 (MQ=255)
                                                                actgggCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATggg                    <  2:3994431/89‑1 (MQ=255)
                                                                actgggCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGAATTATggg                    >  1:1000870/5‑93 (MQ=255)
                                                                actgggCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGCAAG‑GCTGCATTATggg                    >  1:5406261/5‑93 (MQ=255)
                                                                 ctgggCTACAGCCTGAAGGATT‑GTATTGCTTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGc                   <  1:2174925/90‑1 (MQ=255)
                                                                 ctgggCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGc                   <  2:7496145/90‑1 (MQ=255)
                                                                  tgggCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCa                  <  2:1906386/91‑1 (MQ=255)
                                                                  tgggCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCa                  <  2:3431550/91‑1 (MQ=255)
                                                                  tgggCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCa                  <  1:4046383/91‑1 (MQ=255)
                                                                   gggCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAg                 >  1:1944792/2‑93 (MQ=255)
                                                                    ggCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAgg                >  1:5448246/1‑92 (MQ=255)
                                                                    ggCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGt                <  1:5706734/93‑1 (MQ=255)
                                                                    ggCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGt                <  1:6302462/93‑1 (MQ=255)
                                                                    ggCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGt                <  1:6995804/93‑1 (MQ=255)
                                                                     gCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGTTGAACGACGCCGAAATGCTGTCGATGGC‑GGGGCAAG‑GCTGCATTATGGGCAGTg               >  1:7452218/1‑93 (MQ=255)
                                                                     gCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTg               <  2:4887168/93‑1 (MQ=255)
                                                                     gCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTg               >  1:31130/1‑93 (MQ=255)
                                                                      cTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTgg              >  2:1260453/1‑93 (MQ=255)
                                                                      cTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTgc              >  2:6998544/1‑92 (MQ=255)
                                                                      cTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTgc              >  2:6885042/1‑92 (MQ=255)
                                                                      cTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTgc              <  2:8698306/93‑2 (MQ=255)
                                                                      cTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTgc              <  2:3629974/93‑2 (MQ=255)
                                                                      cTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTgc              >  1:6911350/1‑92 (MQ=255)
                                                                           gccTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCgcacc         <  1:1196693/91‑1 (MQ=255)
                                                                           gccTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCgcacc         >  1:3748342/3‑93 (MQ=255)
                                                                           gccTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCgcacc         >  2:7257686/3‑93 (MQ=255)
                                                                             cTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAg       >  2:5479235/1‑93 (MQ=255)
                                                                             cTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAg       <  2:8574727/93‑1 (MQ=255)
                                                                             cTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAg       <  1:6765216/93‑1 (MQ=255)
                                                                             cTGAAGGAGT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAg       <  1:1023537/93‑1 (MQ=255)
                                                                              tGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGc      >  2:6822417/1‑93 (MQ=255)
                                                                               gAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCg     >  2:6328675/1‑93 (MQ=255)
                                                                                aaGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGt    <  2:2026811/93‑1 (MQ=255)
                                                                                 aGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTc   >  1:920898/1‑93 (MQ=255)
                                                                                 aGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTc   <  1:1578105/93‑1 (MQ=255)
                                                                                 aGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTc   <  2:820869/93‑1 (MQ=255)
                                                                                 aGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTc   >  2:3107620/1‑93 (MQ=255)
                                                                                 aGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTc   >  2:4324497/1‑93 (MQ=255)
                                                                                  ggATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCt  >  1:4723247/1‑93 (MQ=255)
                                                                                         |                                                                                        
TCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AA‑‑‑‑CT‑GGCTACAG‑CTGAAGGATT‑G‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑AAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCT  >  NC_000913/4008346‑4008503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A