Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	744	338.8	17650688	97.8%	17262372	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,008,429	+TG	coding (512/516 nt)	b4555 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,008,429	1	.	T	99.6%	791.8 / ‑6.2	222	L171W (TTG→TGG)	b4555	hypothetical protein
Reads supporting (aligned to +/- strand): ref base . (1/0); major base T (101/119); minor base G (0/1); total (102/120)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	NC_000913	4,008,429	2	.	G	99.1%	765.6 / ‑1.7	222	coding (512/516 nt)	b4555	hypothetical protein
Reads supporting (aligned to +/- strand): ref base . (1/1); new base G (101/119); total (102/120)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 251 total aligned reads displayed.

TCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AA‑‑‑‑CT‑GGCTACAG‑CTGAAGGATT‑G‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑AAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCA  >  NC_000913/4008346‑4008515

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tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGtt                                                                                              <  1:5033459/93‑1 (MQ=255)

tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGtt                                                                                              <  2:1392991/93‑1 (MQ=255)

tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGtt                                                                                              <  2:446582/93‑1 (MQ=255)

tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGtt                                                                                              <  2:8159967/93‑1 (MQ=255)

tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGtt                                                                                              <  2:4297949/93‑1 (MQ=255)

 cTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGttt                                                                                             >  1:3614701/1‑92 (MQ=255)

 cTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGttt                                                                                             <  2:2845594/93‑2 (MQ=255)

  tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGtttg                                                                                            <  2:6065576/93‑3 (MQ=255)

  tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGtttg                                                                                            <  2:5872788/93‑3 (MQ=255)

    gAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGtttggt                                                                                          <  1:5805307/93‑5 (MQ=255)

    gAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGtttggt                                                                                          <  1:414086/93‑5 (MQ=255)

    gAAGTGATGGCGGGCGGCGTGTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGtttggt                                                                                          <  2:8637298/93‑5 (MQ=255)

          aTGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACggg                                                                                    >  1:8162548/1‑93 (MQ=255)

           tGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGa                                                                                   <  2:6339319/93‑1 (MQ=255)

           tGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGa                                                                                   <  2:5016974/93‑1 (MQ=255)

           tGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGa                                                                                   <  1:4840526/93‑1 (MQ=255)

           tGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGa                                                                                   <  2:5721445/93‑1 (MQ=255)

            ggcgggcgGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGAt                                                                                  <  1:4509591/93‑1 (MQ=255)

             gcgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATg                                                                                 <  1:7587141/93‑1 (MQ=255)

             gcgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATg                                                                                 <  1:2455348/93‑1 (MQ=255)

             gcgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATg                                                                                 <  1:2829196/93‑1 (MQ=255)

             gcgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑AAGAAGCTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATg                                                                                 <  1:8011368/93‑1 (MQ=255)

             gcgggcggCGTGTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATg                                                                                 <  2:1244672/93‑1 (MQ=255)

              cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGa                                                                                <  1:4501072/93‑1 (MQ=255)

              cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGa                                                                                <  2:2568450/93‑1 (MQ=255)

               gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGaa                                                                               <  2:3664216/93‑1 (MQ=255)

                ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAac                                                                              >  2:4250211/1‑93 (MQ=255)

                ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAac                                                                              >  2:3824349/1‑93 (MQ=255)

                 gcggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacg                                                                             <  1:6357237/93‑1 (MQ=255)

                  cggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacga                                                                            >  2:3745720/1‑93 (MQ=255)

                  cggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacga                                                                            <  1:7747383/93‑1 (MQ=255)

                  cggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacga                                                                            <  1:2025125/93‑1 (MQ=255)

                   ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacgac                                                                           <  2:6245668/93‑1 (MQ=255)

                   ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacgac                                                                           <  1:852079/93‑1 (MQ=255)

                    gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacgacg                                                                          >  2:6899187/1‑93 (MQ=255)

                    gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacgacg                                                                          >  2:4371439/1‑93 (MQ=255)

                    gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacgacg                                                                          >  1:261832/1‑93 (MQ=255)

                     cgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGc                                                                         <  1:1235066/93‑1 (MQ=255)

                      gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGcc                                                                        >  2:511017/1‑93 (MQ=255)

                      gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGcc                                                                        <  1:5184870/93‑1 (MQ=255)

                      gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGcc                                                                        <  1:8597145/93‑1 (MQ=255)

                         tcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaa                                                                     >  2:6546955/4‑93 (MQ=255)

                          caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa                                                                    >  2:3401072/3‑93 (MQ=255)

                          caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa                                                                    <  1:8777764/91‑1 (MQ=255)

                          caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa                                                                    >  1:8442106/3‑93 (MQ=255)

                          caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa                                                                    >  1:3273534/3‑93 (MQ=255)

                          caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa                                                                    <  2:412049/91‑1 (MQ=255)

                           aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt                                                                   >  2:1868207/2‑93 (MQ=255)

                           aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt                                                                   <  2:3778566/92‑1 (MQ=255)

                           aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt                                                                   <  1:2240486/92‑1 (MQ=255)

                           aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt                                                                   >  2:4042825/2‑93 (MQ=255)

                           aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt                                                                   >  2:5855353/2‑93 (MQ=255)

                            aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCGGAAATg                                                                  >  1:2685785/1‑93 (MQ=255)

                            aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg                                                                  <  1:1458219/93‑1 (MQ=255)

                            aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg                                                                  >  1:6726358/1‑93 (MQ=255)

                            aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg                                                                  >  2:3569397/1‑93 (MQ=255)

                             aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc                                                                 <  1:2268510/93‑1 (MQ=255)

                             aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc                                                                 <  1:2171973/93‑1 (MQ=255)

                              aGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt                                                                <  2:4728874/93‑1 (MQ=255)

                              aGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt                                                                <  2:7935961/93‑1 (MQ=255)

                               ggCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTg                                                               <  2:2683727/93‑1 (MQ=255)

                                                                actgggCTACAGCCTGAATGATTGG‑ATTGCGTTTGGTGACGCGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATggg                                <  2:5879708/89‑1 (MQ=255)

                                                                actgggCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGAATTATggg                                >  1:1000870/5‑93 (MQ=255)

                                                                actgggCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGCAAG‑GCTGCATTATggg                                >  1:5406261/5‑93 (MQ=255)

                                                                 ctgggCTACAGCCTGAAGGATT‑GTATTGCTTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGc                               <  1:2174925/90‑1 (MQ=255)

                                                                  tgggCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCa                              <  1:4046383/91‑1 (MQ=255)

                                                                  tgggCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCa                              <  2:1906387/91‑1 (MQ=255)

                                                                   gggCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAg                             >  1:1944792/2‑93 (MQ=255)

                                                                    ggCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAgg                            >  1:5448246/1‑92 (MQ=255)

                                                                    ggCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGt                            <  1:6995804/93‑1 (MQ=255)

                                                                    ggCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGt                            <  1:6302462/93‑1 (MQ=255)

                                                                    ggCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGt                            <  1:5706734/93‑1 (MQ=255)

                                                                     gCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGTTGAACGACGCCGAAATGCTGTCGATGGC‑GGGGCAAG‑GCTGCATTATGGGCAGTg                           >  1:7452218/1‑93 (MQ=255)

                                                                     gCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTg                           >  2:6718306/1‑93 (MQ=255)

                                                                     gCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTg                           <  2:4887168/93‑1 (MQ=255)

                                                                     gCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTg                           >  1:31130/1‑93 (MQ=255)

                                                                      cTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTgg                          >  2:1260453/1‑93 (MQ=255)

                                                                      cTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTgc                          <  2:8698306/93‑2 (MQ=255)

                                                                      cTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTgc                          >  2:6998544/1‑92 (MQ=255)

                                                                      cTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTgc                          >  1:6911350/1‑92 (MQ=255)

                                                                       tACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAATGCTGCATTATGGGCAGTgcg                         >  2:3150070/1‑91 (MQ=255)

                                                                           gccTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCgcacc                     <  1:1196693/91‑1 (MQ=255)

                                                                           gccTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCgcacc                     >  2:2499147/3‑93 (MQ=255)

                                                                           gccTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCgcacc                     >  1:3748342/3‑93 (MQ=255)

                                                                           gccTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCgcacc                     >  2:7257686/3‑93 (MQ=255)

                                                                             cTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAg                   <  2:8574727/93‑1 (MQ=255)

                                                                             cTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAg                   <  1:6765216/93‑1 (MQ=255)

                                                                             cTGAAGGAGT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAg                   <  1:1023537/93‑1 (MQ=255)

                                                                              tGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGc                  >  2:6822417/1‑93 (MQ=255)

                                                                              tGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGc                  <  2:7163346/93‑1 (MQ=255)

                                                                                aaGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGt                >  2:7606503/1‑93 (MQ=255)

                                                                                aaGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGt                <  2:2026811/93‑1 (MQ=255)

                                                                                 aGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTc               >  1:920898/1‑93 (MQ=255)

                                                                                 aGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTc               <  1:1578105/93‑1 (MQ=255)

                                                                                 aGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTc               >  2:5798731/1‑93 (MQ=255)

                                                                                  ggATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCt              >  1:4723247/1‑93 (MQ=255)

                                                                                  ggATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCt              >  2:1599206/1‑93 (MQ=255)

                                                                                  ggATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCt              <  2:3436388/93‑1 (MQ=255)

                                                                                  ggATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCt              <  2:5594563/93‑1 (MQ=255)

                                                                                             gtgTT‑‑GTGACGGGATGAACGACGCCGAAATTCTTGCGATTGCTGGGT‑AAT‑GCTGCATTATTGTCAGTACGCACCAGCTTCTGAAATATCTTCa  >  2:7886797/3‑93 (MQ=255)

||

TCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AA‑‑‑‑CT‑GGCTACAG‑CTGAAGGATT‑G‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑AAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCA  >  NC_000913/4008346‑4008515

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A