Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
744 |
338.8 |
17650688 |
97.8% |
17262372 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,051,144 |
Δ1 bp |
intergenic (+146/+305) |
hemN → / ← glnG |
O2‑independent coproporphyrinogen III oxidase/GlnG |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,051,143 | 0 | C | . | 100.0%
| 939.8
/ NA
| 282 | intergenic (+145/+306) | hemN/glnG | O2‑independent coproporphyrinogen III oxidase/GlnG |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (155/127); total (155/127) |
Only 100 of 304 total aligned reads displayed.
CTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCCATCTGAGCATGATGCCTGATGCGGC‑G‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAG > NC_000913/4051052‑4051230
|
cTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGca > 2:6887724/1‑92 (MQ=255)
gagaACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGcatc < 2:3210958/93‑4 (MQ=255)
agaACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGcatct > 1:3063515/1‑89 (MQ=255)
gaACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTg < 1:8526341/93‑1 (MQ=255)
aaCAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTgg > 2:5761651/1‑92 (MQ=255)
aCAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAg > 2:3057322/1‑93 (MQ=255)
cAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGc < 1:7397364/93‑1 (MQ=255)
aaGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCa > 1:5707189/1‑93 (MQ=255)
aaGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCa < 1:8710514/93‑1 (MQ=255)
aGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGCTAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCat > 1:1166376/1‑93 (MQ=255)
aGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCat > 1:4590959/1‑93 (MQ=255)
ttGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCatgat < 1:2871022/93‑1 (MQ=255)
ccTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGcc < 2:408294/93‑1 (MQ=255)
ccTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGcc < 1:6118726/93‑1 (MQ=255)
cTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAGGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCt < 2:6110128/93‑1 (MQ=255)
tGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTg > 1:2452154/1‑93 (MQ=255)
gATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGa > 1:1008519/1‑93 (MQ=255)
gATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGa < 1:2149305/93‑1 (MQ=255)
aTGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGAt > 1:8638208/1‑93 (MQ=255)
tGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATg > 2:5904950/1‑93 (MQ=255)
tGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATg < 1:1280146/93‑1 (MQ=255)
tGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATg < 1:3150457/93‑1 (MQ=255)
gcgcTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgc < 2:5591665/93‑1 (MQ=255)
gcgcTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgc < 2:7504630/93‑1 (MQ=255)
gcgcTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgc < 2:7268792/93‑1 (MQ=255)
gcTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcgg < 2:2642961/93‑1 (MQ=255)
gcTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcgg > 1:1562552/1‑93 (MQ=255)
gcTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcgg > 1:2701872/1‑93 (MQ=255)
cTGTGCAACAAAGCCTGTTGAAATTATTGCTTTTGTAGTCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcggc < 1:5054408/93‑1 (MQ=25)
gggCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcggc‑gc > 1:3391057/1‑92 (MQ=255)
gggCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcggc‑gc < 1:5375618/93‑2 (MQ=255)
gggCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcggc‑gc < 2:6622215/93‑2 (MQ=255)
gCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcggc‑gctg > 2:7554699/1‑90 (MQ=255)
gCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcggc‑gctg > 1:723732/1‑90 (MQ=255)
acaaAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTc > 2:1171493/1‑93 (MQ=21)
acaaAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTc > 1:8395528/1‑93 (MQ=21)
caaAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTcg > 2:4813793/1‑93 (MQ=25)
aaaaCCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTcgc > 1:3554677/1‑93 (MQ=25)
aaaaCCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTcgc > 1:7442560/1‑93 (MQ=25)
aaaaCCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTcgc > 2:7757538/1‑93 (MQ=25)
aaaCCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTcgcg > 1:4959022/1‑93 (MQ=21)
aaCCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGt > 1:294391/1‑93 (MQ=25)
aCCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTc > 2:2462086/1‑93 (MQ=21)
ccTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCt < 1:4668367/93‑1 (MQ=21)
ccTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCt < 2:229610/93‑1 (MQ=21)
cTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCtt > 2:3493408/1‑93 (MQ=21)
cTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCtt > 1:164985/1‑93 (MQ=21)
cTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCtt < 1:6679912/93‑1 (MQ=21)
cTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCtt > 2:3857893/1‑93 (MQ=21)
tGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTa < 2:1627686/93‑1 (MQ=21)
attGAAATTAATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCC‑TCTGAGCATGATTCCTGATTCGGC‑GCTGGGCGGGTTTTAt < 2:1343151/92‑1 (MQ=18)
ttGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATc < 2:8426770/93‑1 (MQ=21)
ttGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATc < 1:2349543/93‑1 (MQ=21)
ttGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATc > 1:8073153/1‑93 (MQ=21)
ttGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATc > 1:4205749/1‑93 (MQ=21)
ttGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATc > 1:5559293/1‑93 (MQ=21)
ttGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTCAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATc > 2:6790824/1‑93 (MQ=21)
tGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCa < 2:1848932/93‑1 (MQ=21)
attattGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGcc > 1:986686/1‑93 (MQ=18)
attGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTAc > 2:1955083/1‑93 (MQ=18)
ttGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTCCg > 2:2580445/1‑93 (MQ=17)
ttGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACg < 2:4894660/93‑1 (MQ=18)
gCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGACTACGAc > 2:5296076/1‑93 (MQ=17)
tttGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACttt > 1:249623/1‑93 (MQ=17)
gTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTtctc < 1:692328/93‑1 (MQ=18)
gCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCa < 1:2007214/93‑1 (MQ=18)
ggATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATcc > 2:8206804/1‑93 (MQ=18)
ggATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATcc > 2:1455240/1‑93 (MQ=18)
gATAAGGCGTTTACGTCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCg < 1:5858604/93‑1 (MQ=18)
gATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCg < 2:8365941/93‑1 (MQ=18)
gATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCg > 1:3881458/1‑93 (MQ=18)
gATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCg > 1:7938447/1‑93 (MQ=18)
gATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCg > 1:1525293/1‑93 (MQ=18)
aTAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCgg < 1:646461/93‑1 (MQ=18)
aTAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCgg < 2:8232671/93‑1 (MQ=18)
aTAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCgg > 1:4895122/1‑93 (MQ=18)
tAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGc > 2:3383766/1‑93 (MQ=21)
tAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGc > 2:8094725/1‑93 (MQ=21)
aaGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCa < 2:2346727/93‑1 (MQ=18)
aGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCAt > 1:7064707/1‑93 (MQ=21)
aGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCAt > 2:7391734/1‑93 (MQ=21)
ggCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATa > 1:196522/1‑93 (MQ=21)
cGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATaaa < 2:7963341/93‑1 (MQ=21)
cGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATaaa < 1:4014980/93‑1 (MQ=21)
tttACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAaaca > 2:865234/1‑93 (MQ=25)
tttACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAaaca > 2:3910655/1‑93 (MQ=25)
ttccgccgcATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAaacaa < 2:6279336/90‑1 (MQ=21)
ttACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAaacaa < 2:435767/93‑1 (MQ=21)
tACGCCGCATCAGG‑CATCTGAGCATGATGCGTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAaacaac < 2:714705/93‑1 (MQ=25)
cgccgcATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGa > 2:4302549/1‑93 (MQ=25)
ccgcATCAGG‑CATCTGAGCCGGATGCCTGATGCGGCTC‑TGGTCGCGTCTTATCAGGCCTACGACTTCCTCCGCATCCGGCATAAACAACGAGc < 1:8306210/93‑1 (MQ=21)
ccgcATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGc > 2:5834595/1‑93 (MQ=37)
gcATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCtt > 2:2397219/1‑93 (MQ=37)
gcATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCtt > 1:4279029/1‑93 (MQ=37)
gcATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCtt > 2:4562207/1‑93 (MQ=37)
gcATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCtt < 2:4434448/93‑1 (MQ=25)
cATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTc < 2:638547/93‑1 (MQ=37)
tCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGGGCTTCAg > 1:2599184/1‑93 (MQ=37)
tCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAg > 2:7877603/1‑93 (MQ=37)
tCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAg < 2:2737660/93‑1 (MQ=37)
|
CTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCCATCTGAGCATGATGCCTGATGCGGC‑G‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAG > NC_000913/4051052‑4051230
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCCATCTGAGCATGATGCCTGATGCGGC‑G‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAAC > NC_000913/4051054‑4051236
|
GAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCT > SRR4302541.3094566/1‑94 (MQ=60)
GAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCT < SRR4302541.3006130/94‑1 (MQ=60)
AGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTG < SRR4302541.3425690/94‑1 (MQ=60)
AGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTG < SRR4302541.4666727/94‑1 (MQ=60)
GAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGA < SRR4302541.8618075/94‑1 (MQ=60)
GAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGA < SRR4302541.5454986/94‑1 (MQ=60)
AACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAG < SRR4302541.5197074/94‑1 (MQ=60)
ACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGC > SRR4302541.4803538/1‑94 (MQ=60)
ACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGA > SRR4302541.7617735/1‑94 (MQ=60)
CAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCA > SRR4302541.5765372/1‑94 (MQ=60)
CAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCA < SRR4302541.7476470/94‑1 (MQ=60)
AAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGCTAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCAT > SRR4302541.1177587/1‑94 (MQ=60)
AAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCAT < SRR4302541.8803709/94‑1 (MQ=60)
AAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCAT > SRR4302541.1177588/1‑94 (MQ=60)
AAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCAT > SRR4302541.4637510/1‑94 (MQ=60)
AAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCAT > SRR4302541.8597280/1‑94 (MQ=60)
AGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATG < SRR4302541.5800743/94‑1 (MQ=60)
AGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATG < SRR4302541.2203973/94‑1 (MQ=60)
AGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATG < SRR4302541.134260/94‑1 (MQ=60)
ATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGAT < SRR4302541.4228340/94‑1 (MQ=60)
TTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATG < SRR4302541.2899846/94‑1 (MQ=60)
TGCCTGATTCTCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGC < SRR4302541.3287977/94‑1 (MQ=60)
GCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGGCGCATCAGG‑CATCTGATCATGATGCC > SRR4302541.4221101/1‑94 (MQ=60)
CCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCT < SRR4302541.6181221/94‑1 (MQ=60)
CCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCT < SRR4302541.8299226/94‑1 (MQ=60)
CCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCT < SRR4302541.8654378/94‑1 (MQ=60)
CCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCT < SRR4302541.5016142/94‑1 (MQ=60)
CTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTG < SRR4302541.8483098/94‑1 (MQ=60)
CTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTG > SRR4302541.2476543/1‑94 (MQ=60)
TGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGA > SRR4302541.1017865/1‑94 (MQ=60)
GATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGAT < SRR4302541.2170092/94‑1 (MQ=60)
GATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGAT > SRR4302541.8730748/1‑94 (MQ=60)
TGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC < SRR4302541.3182257/94‑1 (MQ=60)
TGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC < SRR4302541.1292846/94‑1 (MQ=60)
GCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCG < SRR4302541.5718439/94‑1 (MQ=60)
CGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG < SRR4302541.4023249/94‑1 (MQ=60)
CGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG > SRR4302541.6051663/1‑94 (MQ=60)
CGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG > SRR4302541.1578203/1‑94 (MQ=60)
CGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG > SRR4302541.2728714/1‑94 (MQ=60)
GCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑TATCTGAGCATGATGCCTGATGCGGC < SRR4302541.6821320/94‑1 (MQ=60)
CTGTGCAACAAAGCCTGTTGAAATTATTGCTTTTGTAGTCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑G < SRR4302541.5106406/94‑1 (MQ=60)
CTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑G > SRR4302541.588915/1‑94 (MQ=60)
TGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑G‑C < SRR4302541.2033801/94‑1 (MQ=60)
TGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑G‑C > SRR4302541.3424881/1‑94 (MQ=60)
GGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑Gct < SRR4302541.5430796/94‑3 (MQ=60)
GGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATATGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑Gctg < SRR4302541.3312068/94‑4 (MQ=60)
GGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑Gctg > SRR4302541.730581/1‑91 (MQ=60)
GGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑Gctg > SRR4302541.564848/1‑91 (MQ=60)
CAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑Gctggc > SRR4302541.4495348/1‑89 (MQ=60)
CAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGT > SRR4302541.4495347/1‑94 (MQ=60)
AACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTC < SRR4302541.1859843/94‑1 (MQ=60)
AACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTC > SRR4302541.8526097/1‑94 (MQ=60)
AACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTC > SRR4302541.8486393/1‑94 (MQ=60)
AACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTC < SRR4302541.5911964/94‑1 (MQ=60)
ACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCG > SRR4302541.7707853/1‑94 (MQ=60)
ACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCG < SRR4302541.6562406/94‑1 (MQ=60)
CAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGC > SRR4302541.3590636/1‑94 (MQ=60)
CAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGC > SRR4302541.7522091/1‑94 (MQ=60)
AAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCG > SRR4302541.5009769/1‑94 (MQ=60)
AAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCG > SRR4302541.5009771/1‑94 (MQ=60)
AAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCG > SRR4302541.3121565/1‑94 (MQ=60)
AAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGT > SRR4302541.296950/1‑94 (MQ=60)
ACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCT > SRR4302541.2970509/1‑94 (MQ=60)
CCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTT > SRR4302541.166219/1‑94 (MQ=60)
CCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTT < SRR4302541.4715913/94‑1 (MQ=60)
CTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTA < SRR4302541.6748920/94‑1 (MQ=60)
CTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTA > SRR4302541.883509/1‑94 (MQ=60)
CTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTA > SRR4302541.3731708/1‑94 (MQ=60)
CGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTAT < SRR4302541.2168833/94‑1 (MQ=60)
CGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTAT < SRR4302541.6383968/94‑1 (MQ=60)
GTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATC > SRR4302541.4247564/1‑94 (MQ=60)
GTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATC > SRR4302541.5616208/1‑94 (MQ=60)
GTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATC > SRR4302541.8161769/1‑94 (MQ=60)
TTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCA > SRR4302541.4662644/1‑94 (MQ=60)
TTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCA < SRR4302541.2372390/94‑1 (MQ=60)
TGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAG > SRR4302541.4444263/1‑94 (MQ=60)
TGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAG < SRR4302541.2002962/94‑1 (MQ=60)
TGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAG > SRR4302541.822406/1‑94 (MQ=60)
TGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAG < SRR4302541.7358901/94‑1 (MQ=60)
TGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAG > SRR4302541.712839/1‑94 (MQ=60)
GAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGG < SRR4302541.2480819/94‑1 (MQ=60)
GAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGG < SRR4302541.1590096/94‑1 (MQ=60)
GAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGG < SRR4302541.2661586/94‑1 (MQ=60)
AAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCCGGC > SRR4302541.3609509/1‑94 (MQ=60)
AAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGC < SRR4302541.1565604/94‑1 (MQ=60)
AATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCC < SRR4302541.3563267/94‑1 (MQ=60)
AATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCC > SRR4302541.995884/1‑94 (MQ=60)
ATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCT > SRR4302541.7053595/1‑94 (MQ=60)
ATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCT < SRR4302541.166206/94‑1 (MQ=60)
TTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTA < SRR4302541.6794377/94‑1 (MQ=60)
TTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTA < SRR4302541.1070109/94‑1 (MQ=60)
TATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTAC < SRR4302541.6606991/94‑1 (MQ=60)
ATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACC > SRR4302541.748720/1‑94 (MQ=60)
TTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGA > SRR4302541.5106611/1‑94 (MQ=60)
TGGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGA < SRR4302541.2791008/94‑1 (MQ=60)
TGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGAC > SRR4302541.5510107/1‑94 (MQ=60)
GCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACT < SRR4302541.1987115/94‑1 (MQ=60)
GTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTT < SRR4302541.2320358/94‑1 (MQ=60)
CTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTT > SRR4302541.8751533/1‑94 (MQ=60)
CTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTT > SRR4302541.1905274/1‑94 (MQ=60)
CTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTT > SRR4302541.2381407/1‑94 (MQ=60)
TTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTT > SRR4302541.315814/1‑94 (MQ=60)
TTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTT < SRR4302541.7283300/94‑1 (MQ=60)
TTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTT > SRR4302541.251621/1‑94 (MQ=60)
TGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTC < SRR4302541.4710928/94‑1 (MQ=60)
TGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTC < SRR4302541.2557579/94‑1 (MQ=60)
GTAGGCGGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCC < SRR4302541.698845/94‑1 (MQ=60)
AGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGC > SRR4302541.4451237/1‑94 (MQ=60)
GCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCAT < SRR4302541.2026659/94‑1 (MQ=60)
CCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATC < SRR4302541.88836/94‑1 (MQ=60)
CGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCC > SRR4302541.5990433/1‑94 (MQ=60)
CGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCC < SRR4302541.4313631/94‑1 (MQ=60)
GGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCG > SRR4302541.8025881/1‑94 (MQ=60)
GGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCG > SRR4302541.8103687/1‑94 (MQ=60)
GGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCG > SRR4302541.1540536/1‑94 (MQ=60)
GGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCG > SRR4302541.4976349/1‑94 (MQ=60)
GGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCG > SRR4302541.3920427/1‑94 (MQ=60)
gagacggtGTTTACGCCCCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATTAGGCCTCCGACTTTCTCCGCATCCGG < SRR4302541.6212794/86‑1 (MQ=60)
GATAAGGCGTTTACGTCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGG < SRR4302541.5918183/94‑1 (MQ=60)
GATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGG < SRR4302541.4029665/94‑1 (MQ=60)
GATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGG > SRR4302541.4945072/1‑94 (MQ=60)
GATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGG < SRR4302541.6213034/94‑1 (MQ=60)
ATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGC < SRR4302541.652570/94‑1 (MQ=60)
AAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCAT < SRR4302541.4250389/94‑1 (MQ=60)
AAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCAT > SRR4302541.4945758/1‑94 (MQ=60)
AAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCAT > SRR4302541.244107/1‑94 (MQ=60)
AAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCAT > SRR4302541.7139847/1‑94 (MQ=60)
AGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATA > SRR4302541.198009/1‑94 (MQ=60)
GCGTTTACGCCGCATCAGG‑CAGCTGAGCAGGATGCCTGATGCGGC‑GCAGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAA < SRR4302541.1219938/94‑1 (MQ=60)
CGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAAC < SRR4302541.4054679/94‑1 (MQ=60)
CGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAAC > SRR4302541.1667375/1‑94 (MQ=60)
CGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAAC < SRR4302541.8761279/94‑1 (MQ=60)
GTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACA > SRR4302541.8448565/1‑94 (MQ=60)
GTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACA < SRR4302541.3057510/94‑1 (MQ=60)
TTCCGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAAC < SRR4302541.1567908/94‑1 (MQ=60)
TTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAAC < SRR4302541.4858525/94‑1 (MQ=60)
CGCCGCATCAGG‑CATCTGAGGATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAG > SRR4302541.8625527/1‑94 (MQ=60)
GCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGC > SRR4302541.2641933/1‑94 (MQ=60)
GCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGC > SRR4302541.7509593/1‑94 (MQ=60)
CCGCATCAGG‑CATCTGAGCCGGATGCCTGATGCGGCTC‑TGGTCGCGTCTTATCAGGCCTACGACTTCCTCCGCATCCGGCATAAACAACGAGCT < SRR4302541.8396513/94‑1 (MQ=60)
CCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCT < SRR4302541.249140/94‑1 (MQ=60)
CCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCT > SRR4302541.2777516/1‑94 (MQ=60)
CGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTT < SRR4302541.8086440/94‑1 (MQ=60)
CGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTT > SRR4302541.4321771/1‑94 (MQ=60)
GCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTC > SRR4302541.7434431/1‑94 (MQ=60)
CATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCA < SRR4302541.2913013/94‑1 (MQ=60)
CATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCA > SRR4302541.2554400/1‑94 (MQ=60)
ATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGGGCTTCAG > SRR4302541.2625211/1‑94 (MQ=60)
ATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAG > SRR4302541.1120369/1‑94 (MQ=60)
TCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGC < SRR4302541.7190522/94‑1 (MQ=60)
TCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGC > SRR4302541.6554735/1‑94 (MQ=60)
TCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGC > SRR4302541.6755489/1‑94 (MQ=60)
CAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCT > SRR4302541.7998814/1‑94 (MQ=60)
CAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCT > SRR4302541.6221490/1‑94 (MQ=60)
CAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCT > SRR4302541.8729856/1‑94 (MQ=60)
CAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCT < SRR4302541.268277/94‑1 (MQ=60)
CAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCT > SRR4302541.5452877/1‑94 (MQ=60)
AGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTA < SRR4302541.7399144/94‑1 (MQ=60)
GGCATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAA > SRR4302541.3946676/1‑94 (MQ=60)
CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAAC > SRR4302541.4218842/1‑94 (MQ=60)
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GAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCCATCTGAGCATGATGCCTGATGCGGC‑G‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAAC > NC_000913/4051054‑4051236
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
