Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
744 |
338.8 |
17650688 |
97.8% |
17262372 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,051,170 |
+C |
intergenic (+172/+279) |
hemN → / ← glnG |
O2‑independent coproporphyrinogen III oxidase/GlnG |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,051,170 | 1 | . | C | 100.0%
| 782.7
/ NA
| 272 | intergenic (+172/+279) | hemN/glnG | O2‑independent coproporphyrinogen III oxidase/GlnG |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (149/123); total (149/123) |
Only 100 of 306 total aligned reads displayed.
TGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCCATCTGAGCATGATGCCTGATGCGGCG‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGCACA > NC_000913/4051077‑4051256
|
tGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcggcg > 1:583418/1‑93 (MQ=255)
tGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcggcg > 2:4965113/1‑93 (MQ=255)
gggCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcggcgc < 1:5375618/93‑2 (MQ=255)
gggCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcggcgc < 2:6622215/93‑2 (MQ=255)
gggCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcggcgc > 1:3391057/1‑92 (MQ=255)
ggCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcggcgct > 2:7399026/1‑91 (MQ=255)
gCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCTGCATCAGG‑CATCTGAGCATGATGCCTGATgcggcgctg > 2:7554700/1‑90 (MQ=25)
gCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcggcgctg > 1:723732/1‑90 (MQ=255)
gCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcggcgctg < 2:4727568/93‑4 (MQ=255)
gCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcggcgctg > 2:5872840/1‑90 (MQ=255)
acaaAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTc < 1:6496178/93‑1 (MQ=25)
caaAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTcg > 1:7626453/1‑93 (MQ=25)
aaaCCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTcgcg > 1:3090222/1‑93 (MQ=25)
aaaCCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTcgcg > 1:4959024/1‑93 (MQ=21)
ccTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCt > 1:2940931/1‑93 (MQ=21)
ccTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCt < 2:4195888/93‑1 (MQ=21)
cTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCtt > 2:3857893/1‑93 (MQ=21)
cTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCtt > 2:3493408/1‑93 (MQ=21)
cTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCtt > 1:164985/1‑93 (MQ=21)
cgTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTa < 1:6319360/92‑1 (MQ=21)
cgTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTa < 1:2148054/92‑1 (MQ=21)
ttGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATc < 2:7540509/93‑1 (MQ=21)
ttGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATc < 2:8426770/93‑1 (MQ=21)
ttGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATc > 1:5559293/1‑93 (MQ=21)
ttGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTCAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATc > 2:6790824/1‑93 (MQ=21)
tGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCa < 1:1983788/93‑1 (MQ=18)
tGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCa < 2:1848932/93‑1 (MQ=21)
gAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAg < 2:2482421/93‑1 (MQ=18)
gAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAg > 1:706196/1‑93 (MQ=18)
gAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAg > 1:4400252/1‑93 (MQ=18)
gAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAg < 1:2635315/93‑1 (MQ=21)
gAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAg > 1:814967/1‑93 (MQ=18)
aaTTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCCGGc > 1:3573310/1‑93 (MQ=18)
ttattGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCt < 1:1060256/93‑1 (MQ=18)
ttattGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCt < 1:6722634/93‑1 (MQ=18)
attGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTAc > 2:2327098/1‑93 (MQ=18)
ttGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTCCg > 2:2580445/1‑93 (MQ=17)
ttGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTAcc > 1:741679/1‑92 (MQ=17)
tggCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACg < 1:2763204/91‑1 (MQ=17)
ttttGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACtt > 1:1887150/1‑93 (MQ=17)
ttttGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACtt < 2:1251921/93‑1 (MQ=17)
ttttGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACtt > 1:8658847/1‑93 (MQ=17)
ttttGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACtt > 1:2358435/1‑93 (MQ=18)
tGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTtct > 2:7026670/1‑93 (MQ=18)
tGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTtct < 1:2532139/93‑1 (MQ=18)
tGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTtct < 1:4663443/93‑1 (MQ=18)
gCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCa < 2:7350997/93‑1 (MQ=18)
ccGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCAt < 1:88070/93‑1 (MQ=18)
cGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATc > 2:115867/1‑93 (MQ=18)
cGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATc < 1:4270960/93‑1 (MQ=18)
ggATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATcc > 2:1455240/1‑93 (MQ=18)
gATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCg > 2:3391237/1‑93 (MQ=18)
gATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCg < 2:8365941/93‑1 (MQ=18)
gATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCg > 2:2659002/1‑93 (MQ=18)
gATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCg > 1:1525293/1‑93 (MQ=18)
aGGCGTTTTCGTCGCAGTAGG‑CATCTGAGCATGATGCCTGATGCGGCGCAGGTCGCGTCTTATCATGCCTACGACGTTCTCCGCATTCGGCAt > 2:7817298/1‑93 (MQ=16)
aGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCAt > 1:4895800/1‑93 (MQ=21)
ggCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATa < 2:8221260/93‑1 (MQ=21)
cGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATaaa < 2:7963341/93‑1 (MQ=21)
tttACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAaaca > 2:865234/1‑93 (MQ=25)
tttACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAaaca > 1:8357896/1‑93 (MQ=25)
tttACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAaaca > 2:3910655/1‑93 (MQ=25)
ttACGCCGCATCAGG‑TATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATTAGGCCTATGACTTTCTCCGCATCCGGCATAaacaa > 2:4855759/1‑93 (MQ=25)
ttACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAaacaa < 2:435767/93‑1 (MQ=21)
tACGCCGCATCAGG‑CATCTGAGCATGATGCGTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAaacaac < 2:714705/93‑1 (MQ=25)
tACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAaacaac > 2:2372336/1‑93 (MQ=25)
cgccgcATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGa < 2:5303467/93‑1 (MQ=25)
cgccgcATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGa > 2:6280125/1‑93 (MQ=25)
cgccgcATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGa > 2:4302549/1‑93 (MQ=25)
ccgcATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGc < 1:247165/93‑1 (MQ=25)
cgcATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCt < 1:7998420/93‑1 (MQ=25)
cgcATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCt > 2:1621721/1‑93 (MQ=37)
gcATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCtt < 2:4434448/93‑1 (MQ=25)
gcATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCtt > 2:4562207/1‑93 (MQ=37)
cATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTc < 2:638547/93‑1 (MQ=37)
aTCAGG‑CATGTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCa > 2:5821573/1‑93 (MQ=37)
caggcATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGc > 2:1232041/5‑93 (MQ=38)
aggcATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCt > 2:322422/4‑93 (MQ=255)
ggcATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTa < 2:8764286/91‑1 (MQ=255)
gcATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTaa > 1:3907625/2‑93 (MQ=255)
aTCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAAc < 1:8072653/93‑1 (MQ=255)
aTCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAAc > 2:8085094/1‑93 (MQ=255)
aTCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAAc > 1:4177412/1‑93 (MQ=255)
tCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACa < 1:2852403/93‑1 (MQ=255)
tCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACa > 1:4734858/1‑93 (MQ=255)
tGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGc > 1:7331132/1‑93 (MQ=255)
tGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGc < 1:3130483/93‑1 (MQ=255)
aGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGccc < 1:5932745/93‑1 (MQ=255)
cATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCaa < 2:5251206/93‑1 (MQ=255)
cATGAGGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCaa < 1:65890/93‑1 (MQ=255)
atgatgCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAAt < 2:1969375/93‑1 (MQ=255)
tgattCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATc < 1:7150116/93‑1 (MQ=255)
gatgCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCa < 2:8112330/93‑1 (MQ=255)
atgCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCAt < 2:7893215/93‑1 (MQ=255)
tgCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCAtt < 2:2401663/93‑1 (MQ=255)
gCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTg > 2:2916093/1‑93 (MQ=255)
gATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCTGCATAAACACCGAGCTTCAGCTAAACAGCCCAATCATTGCGGc > 1:8495270/1‑93 (MQ=39)
aTGCGGCGATGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCAAAACAGCCCAATCATTGCGGca < 2:5000970/93‑1 (MQ=255)
tGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGcac < 2:217032/93‑1 (MQ=255)
tGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGcac < 1:1557811/93‑1 (MQ=255)
|
TGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCCATCTGAGCATGATGCCTGATGCGGCG‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGCACA > NC_000913/4051077‑4051256
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCCATCTGAGCATGATGCCTGATGCGGC‑G‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGCACACAGCACG > NC_000913/4051076‑4051263
|
CTGTGCAACAAAGCCTGTTGAAATTATTGCTTTTGTAGTCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑G < SRR4302541.5106406/94‑1 (MQ=60)
CTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑G > SRR4302541.588915/1‑94 (MQ=60)
TGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑G‑C > SRR4302541.3424881/1‑94 (MQ=60)
TGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑G‑C < SRR4302541.2033801/94‑1 (MQ=60)
GGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑Gct < SRR4302541.5430796/94‑3 (MQ=60)
GGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATATGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑Gctg < SRR4302541.3312068/94‑4 (MQ=60)
GGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑Gctg > SRR4302541.730581/1‑91 (MQ=60)
GGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑Gctg > SRR4302541.564848/1‑91 (MQ=60)
CAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑Gctggc > SRR4302541.4495348/1‑89 (MQ=60)
CAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGT > SRR4302541.4495347/1‑94 (MQ=60)
AACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTC > SRR4302541.8486393/1‑94 (MQ=60)
AACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTC > SRR4302541.8526097/1‑94 (MQ=60)
AACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTC < SRR4302541.1859843/94‑1 (MQ=60)
AACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTC < SRR4302541.5911964/94‑1 (MQ=60)
ACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCG > SRR4302541.7707853/1‑94 (MQ=60)
ACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCG < SRR4302541.6562406/94‑1 (MQ=60)
CAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGC > SRR4302541.7522091/1‑94 (MQ=60)
CAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGC > SRR4302541.3590636/1‑94 (MQ=60)
AAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCG > SRR4302541.5009769/1‑94 (MQ=60)
AAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCG > SRR4302541.5009771/1‑94 (MQ=60)
AAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCG > SRR4302541.3121565/1‑94 (MQ=60)
AAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGT > SRR4302541.296950/1‑94 (MQ=60)
ACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCT > SRR4302541.2970509/1‑94 (MQ=60)
CCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTT < SRR4302541.4715913/94‑1 (MQ=60)
CCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTT > SRR4302541.166219/1‑94 (MQ=60)
CTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTA > SRR4302541.3731708/1‑94 (MQ=60)
CTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTA < SRR4302541.6748920/94‑1 (MQ=60)
CTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTA > SRR4302541.883509/1‑94 (MQ=60)
CGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTAT < SRR4302541.2168833/94‑1 (MQ=60)
CGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTAT < SRR4302541.6383968/94‑1 (MQ=60)
GTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATC > SRR4302541.8161769/1‑94 (MQ=60)
GTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATC > SRR4302541.4247564/1‑94 (MQ=60)
GTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATC > SRR4302541.5616208/1‑94 (MQ=60)
TTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCA < SRR4302541.2372390/94‑1 (MQ=60)
TTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCA > SRR4302541.4662644/1‑94 (MQ=60)
TGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAG > SRR4302541.822406/1‑94 (MQ=60)
TGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAG > SRR4302541.712839/1‑94 (MQ=60)
TGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAG < SRR4302541.2002962/94‑1 (MQ=60)
TGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAG > SRR4302541.4444263/1‑94 (MQ=60)
TGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAG < SRR4302541.7358901/94‑1 (MQ=60)
GAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGG < SRR4302541.2661586/94‑1 (MQ=60)
GAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGG < SRR4302541.2480819/94‑1 (MQ=60)
GAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGG < SRR4302541.1590096/94‑1 (MQ=60)
AAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCCGGC > SRR4302541.3609509/1‑94 (MQ=60)
AAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGC < SRR4302541.1565604/94‑1 (MQ=60)
AATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCC < SRR4302541.3563267/94‑1 (MQ=60)
AATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCC > SRR4302541.995884/1‑94 (MQ=60)
ATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCT > SRR4302541.7053595/1‑94 (MQ=60)
ATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCT < SRR4302541.166206/94‑1 (MQ=60)
TTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTA < SRR4302541.1070109/94‑1 (MQ=60)
TTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTA < SRR4302541.6794377/94‑1 (MQ=60)
TATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTAC < SRR4302541.6606991/94‑1 (MQ=60)
ATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACC > SRR4302541.748720/1‑94 (MQ=60)
TTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGA > SRR4302541.5106611/1‑94 (MQ=60)
TGGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGA < SRR4302541.2791008/94‑1 (MQ=60)
TGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGAC > SRR4302541.5510107/1‑94 (MQ=60)
GCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACT < SRR4302541.1987115/94‑1 (MQ=60)
GTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTT < SRR4302541.2320358/94‑1 (MQ=60)
CTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTT > SRR4302541.8751533/1‑94 (MQ=60)
CTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTT > SRR4302541.2381407/1‑94 (MQ=60)
CTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTT > SRR4302541.1905274/1‑94 (MQ=60)
TTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTT < SRR4302541.7283300/94‑1 (MQ=60)
TTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTT > SRR4302541.251621/1‑94 (MQ=60)
TTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTT > SRR4302541.315814/1‑94 (MQ=60)
TGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTC < SRR4302541.2557579/94‑1 (MQ=60)
TGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTC < SRR4302541.4710928/94‑1 (MQ=60)
GTAGGCGGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCC < SRR4302541.698845/94‑1 (MQ=60)
AGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGC > SRR4302541.4451237/1‑94 (MQ=60)
GCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCAT < SRR4302541.2026659/94‑1 (MQ=60)
CCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATC < SRR4302541.88836/94‑1 (MQ=60)
CGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCC > SRR4302541.5990433/1‑94 (MQ=60)
CGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCC < SRR4302541.4313631/94‑1 (MQ=60)
GGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCG > SRR4302541.4976349/1‑94 (MQ=60)
GGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCG > SRR4302541.1540536/1‑94 (MQ=60)
GGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCG > SRR4302541.8103687/1‑94 (MQ=60)
GGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCG > SRR4302541.3920427/1‑94 (MQ=60)
GGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCG > SRR4302541.8025881/1‑94 (MQ=60)
gagacggtGTTTACGCCCCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATTAGGCCTCCGACTTTCTCCGCATCCGG < SRR4302541.6212794/86‑1 (MQ=60)
GATAAGGCGTTTACGTCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGG < SRR4302541.5918183/94‑1 (MQ=60)
GATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGG > SRR4302541.4945072/1‑94 (MQ=60)
GATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGG < SRR4302541.4029665/94‑1 (MQ=60)
GATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGG < SRR4302541.6213034/94‑1 (MQ=60)
ATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGC < SRR4302541.652570/94‑1 (MQ=60)
AAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCAT < SRR4302541.4250389/94‑1 (MQ=60)
AAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCAT > SRR4302541.4945758/1‑94 (MQ=60)
AAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCAT > SRR4302541.7139847/1‑94 (MQ=60)
AAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCAT > SRR4302541.244107/1‑94 (MQ=60)
AGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATA > SRR4302541.198009/1‑94 (MQ=60)
GCGTTTACGCCGCATCAGG‑CAGCTGAGCAGGATGCCTGATGCGGC‑GCAGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAA < SRR4302541.1219938/94‑1 (MQ=60)
CGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAAC > SRR4302541.1667375/1‑94 (MQ=60)
CGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAAC < SRR4302541.8761279/94‑1 (MQ=60)
CGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAAC < SRR4302541.4054679/94‑1 (MQ=60)
GTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACA < SRR4302541.3057510/94‑1 (MQ=60)
GTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACA > SRR4302541.8448565/1‑94 (MQ=60)
TTCCGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAAC < SRR4302541.1567908/94‑1 (MQ=60)
TTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAAC < SRR4302541.4858525/94‑1 (MQ=60)
CGCCGCATCAGG‑CATCTGAGGATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAG > SRR4302541.8625527/1‑94 (MQ=60)
GCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGC > SRR4302541.2641933/1‑94 (MQ=60)
GCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGC > SRR4302541.7509593/1‑94 (MQ=60)
CCGCATCAGG‑CATCTGAGCCGGATGCCTGATGCGGCTC‑TGGTCGCGTCTTATCAGGCCTACGACTTCCTCCGCATCCGGCATAAACAACGAGCT < SRR4302541.8396513/94‑1 (MQ=60)
CCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCT < SRR4302541.249140/94‑1 (MQ=60)
CCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCT > SRR4302541.2777516/1‑94 (MQ=60)
CGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTT < SRR4302541.8086440/94‑1 (MQ=60)
CGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTT > SRR4302541.4321771/1‑94 (MQ=60)
GCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTC > SRR4302541.7434431/1‑94 (MQ=60)
CATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCA > SRR4302541.2554400/1‑94 (MQ=60)
CATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCA < SRR4302541.2913013/94‑1 (MQ=60)
ATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGGGCTTCAG > SRR4302541.2625211/1‑94 (MQ=60)
ATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAG > SRR4302541.1120369/1‑94 (MQ=60)
TCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGC > SRR4302541.6755489/1‑94 (MQ=60)
TCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGC > SRR4302541.6554735/1‑94 (MQ=60)
TCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGC < SRR4302541.7190522/94‑1 (MQ=60)
CAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCT > SRR4302541.7998814/1‑94 (MQ=60)
CAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCT > SRR4302541.8729856/1‑94 (MQ=60)
CAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCT > SRR4302541.6221490/1‑94 (MQ=60)
CAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCT > SRR4302541.5452877/1‑94 (MQ=60)
CAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCT < SRR4302541.268277/94‑1 (MQ=60)
AGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTA < SRR4302541.7399144/94‑1 (MQ=60)
GGCATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAA > SRR4302541.3946676/1‑94 (MQ=60)
CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAAC > SRR4302541.4218842/1‑94 (MQ=60)
ATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACA < SRR4302541.5227658/94‑1 (MQ=60)
ATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACA > SRR4302541.4783186/1‑94 (MQ=60)
ATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACA < SRR4302541.8161267/94‑1 (MQ=60)
TCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAATAACGAGCTTCAGCTAAACAG < SRR4302541.5854650/94‑1 (MQ=60)
TCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAG < SRR4302541.2881085/94‑1 (MQ=60)
CTGAGCATGGTGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGC < SRR4302541.2818677/94‑1 (MQ=60)
CTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGC > SRR4302541.7409407/1‑94 (MQ=60)
CTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGC < SRR4302541.4392883/94‑1 (MQ=60)
CTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGC > SRR4302541.3576046/1‑94 (MQ=60)
TGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCC < SRR4302541.3162124/94‑1 (MQ=60)
TGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCC < SRR4302541.8156820/94‑1 (MQ=60)
TGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGAATAAACAACGAGCTTCAGCTAAACAGCC < SRR4302541.1806315/94‑1 (MQ=60)
AGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCA < SRR4302541.5993178/94‑1 (MQ=60)
GCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAA > SRR4302541.7314463/1‑94 (MQ=60)
CATGAGGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAAT < SRR4302541.66435/94‑1 (MQ=60)
ATTATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATC < SRR4302541.6803277/94‑1 (MQ=60)
ATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATC < SRR4302541.3179094/94‑1 (MQ=60)
TGATTCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCA < SRR4302541.7226334/94‑1 (MQ=60)
TGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCA > SRR4302541.287772/1‑94 (MQ=60)
GATGCCTGATGCGGC‑GCTGGTCGCGTCTTAGCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCAT < SRR4302541.3129161/94‑1 (MQ=60)
TGCCTGATGCGGC‑GCTGGTAGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTG < SRR4302541.7438166/94‑1 (MQ=60)
CCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCG > SRR4302541.2830125/1‑94 (MQ=60)
CCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCG < SRR4302541.8215576/94‑1 (MQ=60)
CCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCG < SRR4302541.6583658/94‑1 (MQ=60)
CTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGG > SRR4302541.8243377/1‑94 (MQ=60)
CTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGG < SRR4302541.4722455/94‑1 (MQ=60)
TGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCTGCATAAACACCGAGCTTCAGCTAAACAGCCCAATCATTGCGGC > SRR4302541.8586792/1‑94 (MQ=60)
ATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGCAC < SRR4302541.1370424/94‑1 (MQ=60)
TGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGCACA < SRR4302541.1573419/94‑1 (MQ=60)
GGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGCACACAG > SRR4302541.5643457/1‑94 (MQ=60)
GC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGCACACAGC < SRR4302541.6788285/94‑1 (MQ=60)
C‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGCACACAGCACG < SRR4302541.3083500/94‑1 (MQ=60)
C‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGCACACAGCACG > SRR4302541.7641468/1‑94 (MQ=60)
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CTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCCATCTGAGCATGATGCCTGATGCGGC‑G‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGCACACAGCACG > NC_000913/4051076‑4051263
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
