Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,302,454 |
(C)7→8 |
coding (1005/1245 nt) |
mtr ← |
tryptophan‑specific transport protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,302,447 | 1 | . | C | 98.6%
| 720.6
/ 1.2
| 212 | coding (1012/1245 nt) | mtr | tryptophan‑specific transport protein |
| Reads supporting (aligned to +/- strand): ref base . (2/1); new base C (116/92); total (119/93) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
Only 100 of 247 total aligned reads displayed.
ACGGGCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAG > NC_000913/3302355‑3302534
|
aCGGGCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAg < 1:5815498/93‑1 (MQ=255)
aCGGGCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAg < 1:3861599/93‑1 (MQ=255)
gggCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑cc > 2:4114087/1‑93 (MQ=255)
ggCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑ccc > 1:1392106/1‑93 (MQ=255)
ggCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑ccc < 2:3235422/93‑1 (MQ=255)
gCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑ccc‑c < 2:6204472/93‑1 (MQ=255)
cTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑ccc‑cc > 2:148755/1‑93 (MQ=255)
tAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑ccc‑ccc > 2:3449037/1‑93 (MQ=255)
aaCAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑ccc‑cccc < 1:4699766/93‑1 (MQ=255)
aCAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑ccc‑ccccc < 1:2105520/93‑2 (MQ=255)
cAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑ccc‑cccccc > 1:1461404/1‑91 (MQ=255)
cAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑ccc‑ccccca < 2:5523380/93‑3 (MQ=255)
gcCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAAc < 2:1875333/93‑1 (MQ=255)
gcCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAAc > 2:2344404/1‑93 (MQ=255)
ccGGAACACTTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACt < 1:831473/93‑1 (MQ=255)
ccGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACt < 1:1202215/93‑1 (MQ=255)
ccGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑CCCACCCCACAACt > 2:6114452/1‑93 (MQ=255)
ggAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTgg > 2:188967/1‑93 (MQ=255)
ggAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTgg > 2:6371687/1‑93 (MQ=255)
ggAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAAAGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTgg > 1:1016733/1‑93 (MQ=255)
gAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCC‑CCCCACAACTgg < 1:657179/93‑1 (MQ=255)
gAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGc < 1:2942488/93‑1 (MQ=255)
gAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGc > 1:4643140/1‑93 (MQ=255)
aaCAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCg < 1:1834884/93‑1 (MQ=255)
cAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCggg < 1:6461777/93‑1 (MQ=255)
cAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCggg > 2:5716261/1‑93 (MQ=255)
aTTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGc < 1:6410053/93‑1 (MQ=255)
aTTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGc > 2:5090106/1‑93 (MQ=255)
gccgccCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCaaa < 1:5097795/93‑1 (MQ=255)
gccgccCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCaaa < 1:2775466/93‑1 (MQ=255)
ccgccCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAg < 2:5081427/93‑1 (MQ=255)
gccCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGt > 2:3286072/1‑93 (MQ=255)
gccCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGt > 1:3283068/1‑93 (MQ=255)
cccAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTc < 1:1162160/93‑1 (MQ=255)
cccAGATGGTAGCCGCTAAACCAGCATAACCAAAGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTc > 2:6301350/1‑93 (MQ=255)
ccaaGATGGTAGCCGCTAAACCAGCATATCCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTc < 2:1197911/90‑1 (MQ=255)
ccAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCa > 2:5605479/1‑93 (MQ=255)
ccAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCa < 1:6072524/93‑1 (MQ=255)
aGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGc > 1:3667927/1‑93 (MQ=255)
gATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCa > 2:4472153/1‑93 (MQ=255)
aTGGTAGCCGCTAAGCCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCaa < 1:1295558/93‑1 (MQ=255)
tGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAAt > 1:3928016/1‑93 (MQ=255)
tGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAAt < 1:2299436/93‑1 (MQ=255)
tGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAAt > 2:2886313/1‑93 (MQ=255)
gTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGc < 1:4820519/93‑1 (MQ=255)
tAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGcc < 2:4483344/93‑1 (MQ=255)
aGCCGCTAAACCAGCATAACCAATAGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCCATGCCg > 1:4764619/1‑93 (MQ=255)
gCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGt > 2:5007716/1‑93 (MQ=255)
gCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGtttt < 2:4907888/93‑1 (MQ=255)
gCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGtttt > 2:3765542/1‑93 (MQ=255)
gCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGtttt > 1:5555689/1‑93 (MQ=255)
aaaCCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCaa > 2:715986/1‑93 (MQ=255)
aaaCCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCaa > 1:2432759/1‑93 (MQ=255)
aaCCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAg > 2:4301136/1‑93 (MQ=255)
aaCCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAg < 2:6035065/93‑1 (MQ=255)
aCCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCCGCAATGCCGTTTTCAAGc > 1:632793/1‑93 (MQ=255)
aCCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGc < 2:3705541/93‑1 (MQ=255)
aCCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGc > 1:2275856/1‑93 (MQ=255)
ccAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCg > 1:311211/1‑93 (MQ=255)
aGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGc < 2:2854525/93‑1 (MQ=255)
gCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCCAAGGTCAGCAATGCCGTTTTCAAGCGGcc > 1:371185/1‑93 (MQ=255)
cATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGccc > 2:3994835/1‑93 (MQ=255)
cATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGccc < 2:1101520/93‑1 (MQ=255)
tAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCcac > 2:2190136/1‑93 (MQ=255)
ccAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGc > 2:2635125/1‑93 (MQ=255)
cAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGcc < 2:1252586/93‑1 (MQ=255)
cAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGcc < 2:3131577/93‑1 (MQ=255)
aTGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCC‑CCCCACAACTGGCGGGGCAAATGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCg > 2:2098456/1‑93 (MQ=255)
aTGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGa < 1:3568180/93‑1 (MQ=255)
aTGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGa > 1:3440118/1‑93 (MQ=255)
aTGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGa > 2:3636299/1‑93 (MQ=255)
aTGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGa > 2:1807447/1‑93 (MQ=255)
gCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAgtc > 1:5001576/1‑93 (MQ=255)
gCGTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAgtc < 1:2085243/93‑1 (MQ=255)
gTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAgtcgt < 2:4994251/93‑1 (MQ=255)
gTACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAgtcgt < 1:1577572/93‑1 (MQ=255)
tACAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAgtcgtc < 2:5786384/93‑1 (MQ=255)
cAGGAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGa > 1:5460357/1‑93 (MQ=255)
ggAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGaaa > 2:4247011/1‑93 (MQ=255)
ggAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGaaa > 1:6205060/1‑93 (MQ=255)
gAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAAc < 1:931449/93‑1 (MQ=255)
gAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAAc < 1:297525/93‑1 (MQ=255)
gAATCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAAc < 2:5360364/93‑1 (MQ=255)
aTCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCa > 1:568291/1‑93 (MQ=255)
aTCCGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCa > 2:2753326/1‑93 (MQ=255)
accGTTCGGGAACAACAG‑‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCaaa < 2:6454143/92‑1 (MQ=255)
cGTTCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAAc > 2:5243902/1‑93 (MQ=255)
ttCGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAg > 1:4721659/1‑93 (MQ=255)
tgcGGGAACACCAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAg < 2:2925408/91‑1 (MQ=255)
cGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGAt < 2:4722702/93‑1 (MQ=255)
cGGGAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGAt < 1:1935721/93‑1 (MQ=255)
gggAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATc > 2:175049/1‑93 (MQ=255)
gggAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATc < 1:2560873/93‑1 (MQ=255)
ggAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCt > 1:5733553/1‑93 (MQ=255)
ggAACAACAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCt < 2:1795250/93‑1 (MQ=255)
aacaacAGCCCCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTg < 1:5426688/93‑1 (MQ=255)
aacaacAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGc > 2:5917211/1‑93 (MQ=255)
aacaacAGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGc < 1:5326704/93‑1 (MQ=255)
acaacaGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGcc < 1:4452616/93‑1 (MQ=255)
acaacaGC‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGcc > 2:5131081/1‑93 (MQ=255)
|
ACGGGCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑CCC‑CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAG > NC_000913/3302355‑3302534
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAACAA > NC_000913/3302361‑3302546
|
TAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCC > SRR4302534.5851789/1‑94 (MQ=60)
TAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCC < SRR4302534.1276510/94‑1 (MQ=60)
TAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCC > SRR4302534.1658474/1‑94 (MQ=60)
AACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCC > SRR4302534.5293365/1‑94 (MQ=60)
AACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCC > SRR4302534.4980145/1‑94 (MQ=60)
AACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCC < SRR4302534.4827349/94‑1 (MQ=60)
AACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCC > SRR4302534.237651/1‑94 (MQ=60)
ACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCca < SRR4302534.2160826/94‑3 (MQ=60)
ACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCCC > SRR4302534.1499833/1‑94 (MQ=60)
ACAGCCCCGAAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCca < SRR4302534.1912658/94‑3 (MQ=60)
CCGGAACACTTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTG < SRR4302534.852385/94‑1 (MQ=60)
CCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTG < SRR4302534.1233855/94‑1 (MQ=60)
CCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGA‑‑CCCCCCCACAACTG > SRR4302534.984342/1‑94 (MQ=60)
CGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAAAGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGG > SRR4302534.1042911/1‑94 (MQ=60)
CGCAAAAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGG < SRR4302534.4616242/94‑1 (MQ=60)
GGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC > SRR4302534.1574740/1‑94 (MQ=60)
GGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC > SRR4302534.4769171/1‑94 (MQ=60)
GGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC > SRR4302534.2455126/1‑94 (MQ=60)
GAACAATTGCCTCCCAGATGGTAGCCGCTAGACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGACCAACAGC‑‑CCCCCCCGCAACTGGCG < SRR4302534.5319907/94‑1 (MQ=60)
GAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCC‑CCCCCCCACAACTGGC < SRR4302534.673178/94‑1 (MQ=60)
GAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCG < SRR4302534.3019693/94‑1 (MQ=60)
AACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGG < SRR4302534.1250697/94‑1 (MQ=60)
AACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGG < SRR4302534.2277203/94‑1 (MQ=60)
AACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGG < SRR4302534.1882596/94‑1 (MQ=60)
CAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGG < SRR4302534.6635825/94‑1 (MQ=60)
CAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGG < SRR4302534.2678023/94‑1 (MQ=60)
CAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGCTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGG > SRR4302534.1200475/1‑94 (MQ=60)
AATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGC > SRR4302534.5977514/1‑94 (MQ=60)
ATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCA < SRR4302534.6583031/94‑1 (MQ=60)
GCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAG < SRR4302534.2848489/94‑1 (MQ=60)
GCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAG < SRR4302534.5235385/94‑1 (MQ=60)
CCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGG < SRR4302534.2230406/94‑1 (MQ=60)
CGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGT > SRR4302534.3370572/1‑94 (MQ=60)
CCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCA < SRR4302534.975808/94‑1 (MQ=60)
CCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCA < SRR4302534.1192657/94‑1 (MQ=60)
CCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAG < SRR4302534.6237634/94‑1 (MQ=60)
CCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAG > SRR4302534.3924897/1‑94 (MQ=60)
CCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTAAG > SRR4302534.2059132/1‑94 (MQ=60)
CAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGC > SRR4302534.3766519/1‑94 (MQ=60)
AGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCA > SRR4302534.5923054/1‑94 (MQ=60)
AGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCA > SRR4302534.4920943/1‑94 (MQ=60)
AGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCA > SRR4302534.4349957/1‑94 (MQ=60)
ATGGTAGCCGCTAAGCCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAAT < SRR4302534.1329694/94‑1 (MQ=60)
ATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAAT > SRR4302534.4033242/1‑94 (MQ=60)
TGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATG < SRR4302534.2360474/94‑1 (MQ=60)
GTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCC < SRR4302534.4951345/94‑1 (MQ=60)
TAGCCGCTAAACCAGCATAACCAATAGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCCATGCCG > SRR4302534.4894001/1‑94 (MQ=60)
CCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTT < SRR4302534.1486168/94‑1 (MQ=60)
CGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTT > SRR4302534.876109/1‑94 (MQ=60)
CGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTT > SRR4302534.5705685/1‑94 (MQ=60)
CTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCA > SRR4302534.1357905/1‑94 (MQ=60)
CTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCA > SRR4302534.2548337/1‑94 (MQ=60)
TAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAA > SRR4302534.2497432/1‑94 (MQ=60)
TAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAA > SRR4302534.3815781/1‑94 (MQ=60)
AAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAG > SRR4302534.3455925/1‑94 (MQ=60)
AAACCAGCATAACAAATCGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTTGCGGGGTACAGGTCAGCAATGCCGTTTTCGAG > SRR4302534.3633077/1‑94 (MQ=60)
AACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCCGCAATGCCGTTTTCAAGC > SRR4302534.648149/1‑94 (MQ=60)
AACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGC < SRR4302534.6632163/94‑1 (MQ=60)
AACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGC < SRR4302534.6632164/94‑1 (MQ=60)
AACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGC > SRR4302534.3502650/1‑94 (MQ=60)
AACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGC > SRR4302534.2336243/1‑94 (MQ=60)
ACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCG < SRR4302534.5852334/94‑1 (MQ=60)
ACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCG > SRR4302534.319243/1‑94 (MQ=60)
CCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGG < SRR4302534.1106534/94‑1 (MQ=60)
CAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGC > SRR4302534.3281307/1‑94 (MQ=60)
AGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCCAAGGTCAGCAATGCCGTTTTCAAGCGGCC > SRR4302534.380651/1‑94 (MQ=60)
AGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCC > SRR4302534.1780426/1‑94 (MQ=60)
AGAATAACCAGTGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCC < SRR4302534.2346821/94‑1 (MQ=60)
GCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCC > SRR4302534.2059090/1‑94 (MQ=60)
GCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCC < SRR4302534.6650935/94‑1 (MQ=60)
CATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCA < SRR4302534.3647995/94‑1 (MQ=60)
CATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCA > SRR4302534.5484406/1‑94 (MQ=60)
ATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCC > SRR4302534.5605509/1‑94 (MQ=60)
ACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCC‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAG > SRR4302534.4993966/1‑94 (MQ=60)
ACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGC < SRR4302534.6387719/94‑1 (MQ=60)
CAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCG > SRR4302534.6415579/1‑94 (MQ=60)
CAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCCGCCCACAGCCG > SRR4302534.5801332/1‑94 (MQ=60)
aaggcCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGA < SRR4302534.2535756/89‑1 (MQ=60)
AATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGA > SRR4302534.3532580/1‑94 (MQ=60)
AATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGA < SRR4302534.4867729/94‑1 (MQ=60)
ATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAG > SRR4302534.4009525/1‑94 (MQ=60)
ATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAG < SRR4302534.751964/94‑1 (MQ=60)
ATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAG < SRR4302534.3664157/94‑1 (MQ=60)
TGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGT > SRR4302534.6068189/1‑94 (MQ=60)
GGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTC > SRR4302534.5674135/1‑94 (MQ=60)
GGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTC > SRR4302534.5136790/1‑94 (MQ=60)
GCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCG < SRR4302534.2139886/94‑1 (MQ=60)
GTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTC < SRR4302534.1618847/94‑1 (MQ=60)
GTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTC < SRR4302534.3730604/94‑1 (MQ=60)
TACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCG < SRR4302534.1431892/94‑1 (MQ=60)
TACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCG > SRR4302534.482731/1‑94 (MQ=60)
TACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCG < SRR4302534.5478133/94‑1 (MQ=60)
TACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCG < SRR4302534.3094599/94‑1 (MQ=60)
TACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCG < SRR4302534.3773735/94‑1 (MQ=60)
ACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGA > SRR4302534.5607527/1‑94 (MQ=60)
acggacTCCGTCCGGGAAAAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCAGTTTTCAAGCGGCCCACGGCTGAGTCGTCGAA < SRR4302534.5064070/88‑1 (MQ=60)
AGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAA > SRR4302534.6373780/1‑94 (MQ=60)
GAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACC < SRR4302534.305215/94‑1 (MQ=60)
GAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACC < SRR4302534.955142/94‑1 (MQ=60)
AATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCA < SRR4302534.4883527/94‑1 (MQ=60)
AATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCA > SRR4302534.4779987/1‑94 (MQ=60)
AATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCA > SRR4302534.582247/1‑94 (MQ=60)
AATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCA > SRR4302534.3024758/1‑94 (MQ=60)
ATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAA > SRR4302534.5672280/1‑94 (MQ=60)
TCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAA > SRR4302534.3126041/1‑94 (MQ=60)
GTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAG > SRR4302534.4849898/1‑94 (MQ=60)
GTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAG < SRR4302534.4593119/94‑1 (MQ=60)
CGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATC < SRR4302534.1986333/94‑1 (MQ=60)
CGGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATC > SRR4302534.3666624/1‑94 (MQ=60)
GGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCT < SRR4302534.2628748/94‑1 (MQ=60)
GGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCT > SRR4302534.5888925/1‑94 (MQ=60)
GGGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCT > SRR4302534.5181917/1‑94 (MQ=60)
GGAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTG < SRR4302534.2941563/94‑1 (MQ=60)
GAACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGGCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGC > SRR4302534.4460109/1‑94 (MQ=60)
AACAACAGCC‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGC < SRR4302534.5572749/94‑1 (MQ=60)
AACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCC < SRR4302534.5470376/94‑1 (MQ=60)
AACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCC > SRR4302534.2144611/1‑94 (MQ=60)
ACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCA > SRR4302534.673563/1‑94 (MQ=60)
ACAACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCA < SRR4302534.4572967/94‑1 (MQ=60)
AACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGGCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGA > SRR4302534.4559994/1‑94 (MQ=60)
ACAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGAT < SRR4302534.4900/94‑1 (MQ=60)
CAGC‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATA > SRR4302534.1844787/1‑94 (MQ=60)
caccCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATA < SRR4302534.280655/90‑1 (MQ=60)
agcCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACCGATCTGCCAGATAG > SRR4302534.3830423/4‑94 (MQ=60)
agcCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAG > SRR4302534.5278796/4‑94 (MQ=60)
agcCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAG > SRR4302534.4175287/4‑94 (MQ=60)
agcCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGCCGCCGCAACCAAACAGATCTGCCAGATAG > SRR4302534.2865885/4‑94 (MQ=60)
gcCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGCAACCAAACAGATCTGCCAGATAGT < SRR4302534.5322663/92‑1 (MQ=60)
gcCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGT < SRR4302534.512714/92‑1 (MQ=60)
gcCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGT < SRR4302534.3846595/92‑1 (MQ=60)
CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCA > SRR4302534.5464530/1‑94 (MQ=60)
CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCA < SRR4302534.1015296/94‑1 (MQ=60)
CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAA > SRR4302534.422649/1‑94 (MQ=60)
CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAA < SRR4302534.279192/94‑1 (MQ=60)
CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAA < SRR4302534.3526610/94‑1 (MQ=60)
CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAA > SRR4302534.3303185/1‑94 (MQ=60)
CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAA > SRR4302534.4539557/1‑94 (MQ=60)
CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAA > SRR4302534.2371071/1‑94 (MQ=60)
CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAA < SRR4302534.1473548/94‑1 (MQ=60)
CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAAC > SRR4302534.5832085/1‑94 (MQ=60)
CCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAACA < SRR4302534.5269026/94‑1 (MQ=60)
CCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAACA > SRR4302534.6019573/1‑94 (MQ=60)
CCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAACAA > SRR4302534.4173752/1‑94 (MQ=60)
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TAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAACAA > NC_000913/3302361‑3302546
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
