Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,548,005	C→T	G701D (GGT→GAT)	malP ←	maltodextrin phosphorylase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,548,005	0	C	T	99.5%	830.8 / NA	216	G701D (GGT→GAT)	malP	maltodextrin phosphorylase
Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (102/113); minor base G (0/1); total (102/114)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 253 total aligned reads displayed.

TACTGTGCAGCATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTACCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATATTTTCT  >  NC_000913/3547916‑3548094

tACTGTGCAGCATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCaccttatctt                                                                                        <  1:4825424/93‑1 (MQ=255)

tACTGTGCAGCATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCaccttatctt                                                                                        >  2:4334511/1‑93 (MQ=255)

  cTGTGCAGCATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTttc                                                                                      >  1:1166124/1‑93 (MQ=255)

  cTGTGCAGCATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTttc                                                                                      <  1:242643/93‑1 (MQ=255)

    gtgCAGCATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTAtctttctt                                                                                    <  2:4862927/93‑1 (MQ=255)

     tgCAGCATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTttcttc                                                                                   >  1:1222393/1‑93 (MQ=255)

        agcaTCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGc                                                                                <  1:4894440/93‑1 (MQ=255)

        agcaTCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGc                                                                                >  1:4060300/1‑93 (MQ=255)

            tCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCAtt                                                                            <  1:1703812/93‑1 (MQ=255)

            tCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCAtt                                                                            >  1:2396972/1‑93 (MQ=255)

            tCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCAtt                                                                            >  2:5307843/1‑93 (MQ=255)

             cTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCAttt                                                                           >  1:4542008/1‑93 (MQ=255)

              tGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTc                                                                          >  2:2215395/1‑93 (MQ=255)

              tGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTc                                                                          <  1:5441106/93‑1 (MQ=255)

                 tCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCAcc                                                                       <  2:6221613/93‑1 (MQ=255)

                  cGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCg                                                                      <  2:4854893/93‑1 (MQ=255)

                  cGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCg                                                                      <  1:513940/93‑1 (MQ=255)

                   gAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCgg                                                                     >  1:5933527/1‑93 (MQ=255)

                   gAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCgg                                                                     >  1:3110195/1‑93 (MQ=255)

                    aaGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCggg                                                                    >  2:3048539/1‑93 (MQ=255)

                     aGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGt                                                                   <  2:3542085/93‑1 (MQ=255)

                      ggCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCTGGTc                                                                  >  1:2007415/1‑93 (MQ=255)

                      ggCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTc                                                                  >  1:420227/1‑93 (MQ=255)

                      ggCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTc                                                                  <  2:5534098/93‑1 (MQ=255)

                        cATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGt                                                                <  2:669546/93‑1 (MQ=255)

                        cATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGt                                                                >  1:428492/1‑93 (MQ=255)

                          tGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAg                                                              >  1:5279484/1‑93 (MQ=255)

                            cTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGcc                                                            >  1:2908462/1‑93 (MQ=255)

                             ttATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCt                                                           <  2:478789/93‑1 (MQ=255)

                             ttATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCt                                                           >  1:5815008/1‑93 (MQ=255)

                             ttATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCt                                                           >  2:5204455/1‑93 (MQ=255)

                             ttATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCt                                                           <  2:1439054/93‑1 (MQ=255)

                              tATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCtt                                                          <  2:4474039/93‑1 (MQ=255)

                              tATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCtt                                                          <  2:2026582/93‑1 (MQ=255)

                                tCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTg                                                        >  1:3361914/1‑93 (MQ=255)

                                tCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTg                                                        <  2:1394793/93‑1 (MQ=255)

                                 cGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTgg                                                       <  2:3935208/93‑1 (MQ=255)

                                  gCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTTGc                                                      >  1:4718916/1‑93 (MQ=255)

                                  gCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGc                                                      >  1:5406936/1‑93 (MQ=255)

                                   ccGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGcc                                                     <  1:280960/93‑1 (MQ=255)

                                    cGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTACGCCATTTCACCGGGTCGTAGCCTTTGGCCa                                                    >  1:1091898/1‑93 (MQ=255)

                                     gTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAg                                                   <  1:44137/93‑1 (MQ=255)

                                     gTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAg                                                   >  1:2449905/1‑93 (MQ=255)

                                       cGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGaa                                                 >  2:4445829/1‑93 (MQ=255)

                                       cGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGaa                                                 >  2:6465783/1‑93 (MQ=255)

                                        gCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAAt                                                <  2:4202249/93‑1 (MQ=255)

                                         cTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAAtt                                               <  1:295391/93‑1 (MQ=255)

                                         cTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAAtt                                               >  1:504356/1‑93 (MQ=255)

                                          tGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTg                                              >  1:2566582/1‑93 (MQ=255)

                                           gTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCATCCGCCATTTCACCGGGTCGTAGCCTGTGGCCAGAATTGc                                             >  1:6472572/1‑93 (MQ=255)

                                            tATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGcc                                            >  2:2539833/1‑93 (MQ=255)

                                            tATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGcc                                            <  2:1863269/93‑1 (MQ=255)

                                             aTTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCt                                           <  2:5788274/93‑1 (MQ=255)

                                              tttACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCtt                                          >  1:395525/1‑93 (MQ=255)

                                               ttACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTc                                         <  2:2730786/93‑1 (MQ=255)

                                                tACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTcg                                        <  2:3608650/93‑2 (MQ=255)

                                                tACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCa                                        <  1:3837958/93‑1 (MQ=255)

                                                 aCCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCAc                                       >  2:4662779/1‑93 (MQ=255)

                                                   cGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACtt                                     <  2:3330806/93‑1 (MQ=255)

                                                    gCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTg                                    >  2:2367551/1‑93 (MQ=255)

                                                     cTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGt                                   <  1:1013682/93‑1 (MQ=255)

                                                      tttCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGtt                                  <  2:367273/93‑1 (MQ=255)

                                                      tttCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGtt                                  >  1:1301900/1‑93 (MQ=255)

                                                           aGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACg                             <  1:2188948/93‑1 (MQ=255)

                                                            gCTCTTTCAATACTGCGTCCAGCTCCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACgg                            >  1:5194041/1‑93 (MQ=255)

                                                            gCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACgg                            <  2:2865735/93‑1 (MQ=255)

                                                            gCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACgg                            >  2:4069146/1‑93 (MQ=255)

                                                            gCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACgg                            <  1:2619275/93‑1 (MQ=255)

                                                            gCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACgg                            >  1:4562527/1‑93 (MQ=255)

                                                             ctctTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGt                           >  2:3326626/1‑93 (MQ=255)

                                                              tctTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTa                          <  2:5635625/93‑1 (MQ=255)

                                                               ctTTCAATACTGCGTCCAGCACGTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTAt                         <  1:6063973/93‑1 (MQ=255)

                                                               ctTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTAt                         <  2:4515670/93‑1 (MQ=255)

                                                                tttCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCCCGGTATg                        <  1:3570878/93‑1 (MQ=255)

                                                                tttCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATg                        <  2:510108/93‑1 (MQ=255)

                                                                tttCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATg                        >  1:2473628/1‑93 (MQ=255)

                                                                  tCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGAc                      <  2:2003254/93‑1 (MQ=255)

                                                                  tCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGAc                      <  2:3177263/93‑1 (MQ=255)

                                                                  tCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGAc                      <  1:4476676/93‑1 (MQ=255)

                                                                  tCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGAc                      <  2:2459186/93‑1 (MQ=255)

                                                                   cAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGAcc                     >  2:1727823/1‑93 (MQ=255)

                                                                    aaTACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCa                    <  2:3392008/93‑1 (MQ=255)

                                                                    aaTACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCa                    >  1:6329606/1‑93 (MQ=255)

                                                                    aaTACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCa                    >  2:2312042/1‑93 (MQ=255)

                                                                     aTACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCaa                   >  1:3335470/1‑93 (MQ=255)

                                                                     aTACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCaa                   >  1:3312804/1‑93 (MQ=255)

                                                                         tGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAAt               >  2:1052619/1‑93 (MQ=255)

                                                                             tCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAg           >  1:3791128/1‑93 (MQ=255)

                                                                             tCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAg           <  1:304068/93‑1 (MQ=255)

                                                                              ccAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGa          <  2:1606254/93‑1 (MQ=255)

                                                                              ccAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGa          <  2:6130024/93‑1 (MQ=255)

                                                                               cAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGat         <  1:6158484/93‑1 (MQ=255)

                                                                                aGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGata        <  2:2755403/93‑1 (MQ=255)

                                                                                 gCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGatat       <  2:842615/93‑1 (MQ=255)

                                                                                   cccttatcttTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATAttt     <  1:784092/92‑1 (MQ=255)

                                                                                   accttatcttTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATAttt     <  2:2089655/93‑1 (MQ=255)

                                                                                   accttatcttTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATAttt     <  2:5497964/93‑1 (MQ=255)

                                                                                   accttatcttTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATAttt     <  1:6188704/93‑1 (MQ=255)

                                                                                      ttatcttTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATATTttct  <  2:2389356/93‑1 (MQ=255)

                                                                                      ttatcttTCTTCCGCCATCTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATATTttct  <  2:5846694/93‑1 (MQ=255)

TACTGTGCAGCATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTACCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATATTTTCT  >  NC_000913/3547916‑3548094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGATACTGTGCAGCATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTACCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATATTTTCTTCAC  >  NC_000913/3547913‑3548098

CGATACTGTGCAGCATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATC                                                                                              <  SRR4302534.4841768/94‑1 (MQ=60)

  ATACTGTGCAGCATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTT                                                                                            >  SRR4302534.2485933/1‑94 (MQ=60)

   TACTGTGCAGCATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTT                                                                                           <  SRR4302534.4956370/94‑1 (MQ=60)

   TACTGTGCAGCATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTT                                                                                           <  SRR4302534.3320442/94‑1 (MQ=60)

   TACTGTGCAGCATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTT                                                                                           <  SRR4302534.301279/94‑1 (MQ=60)

    ACTGTGCAGCATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTC                                                                                          >  SRR4302534.1196750/1‑94 (MQ=60)

     CTGTGCAGCATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCT                                                                                         >  SRR4302534.5385887/1‑94 (MQ=60)

     CTGTGCAGCATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCT                                                                                         <  SRR4302534.248993/94‑1 (MQ=60)

      TGTGCAGCATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTT                                                                                        <  SRR4302534.6116671/94‑1 (MQ=60)

       GTGCAGCATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTC                                                                                       <  SRR4302534.6340092/94‑1 (MQ=60)

       GTGCAGCATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTC                                                                                       >  SRR4302534.1254583/1‑94 (MQ=60)

       GTGCAGCATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTC                                                                                       >  SRR4302534.499317/1‑94 (MQ=60)

       GTGCAGCATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTC                                                                                       <  SRR4302534.4342859/94‑1 (MQ=60)

        TGCAGAATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCC                                                                                      <  SRR4302534.1065860/94‑1 (MQ=60)

         GCAGCATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCG                                                                                     <  SRR4302534.5821562/94‑1 (MQ=60)

          CAGCATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGC                                                                                    >  SRR4302534.4169213/1‑94 (MQ=60)

           AGCATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCC                                                                                   <  SRR4302534.5027139/94‑1 (MQ=60)

           AGCATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCC                                                                                   >  SRR4302534.4882397/1‑94 (MQ=60)

            GCATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCA                                                                                  <  SRR4302534.421881/94‑1 (MQ=60)

             CATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCAT                                                                                 >  SRR4302534.4835248/1‑94 (MQ=60)

              ATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATT                                                                                >  SRR4302534.2460667/1‑94 (MQ=60)

               TCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTT                                                                               >  SRR4302534.4665133/1‑94 (MQ=60)

               TCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTT                                                                               <  SRR4302534.1748082/94‑1 (MQ=60)

                 TGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCA                                                                             <  SRR4302534.5587671/94‑1 (MQ=60)

                    TCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCA                                                                          <  SRR4302534.2633068/94‑1 (MQ=60)

                     CGAAGGCATTCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGG                                                                         <  SRR4302534.461577/94‑1 (MQ=60)

                     CGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGG                                                                         >  SRR4302534.1254598/1‑94 (MQ=60)

                     CGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGG                                                                         <  SRR4302534.526726/94‑1 (MQ=60)

                     CGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGG                                                                         >  SRR4302534.3191985/1‑94 (MQ=60)

                     CGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGG                                                                         >  SRR4302534.6094655/1‑94 (MQ=60)

                      GAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGG                                                                        >  SRR4302534.3939478/1‑94 (MQ=60)

                        AGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCTGGTC                                                                      >  SRR4302534.2059946/1‑94 (MQ=60)

                        AGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTC                                                                      <  SRR4302534.5147994/94‑1 (MQ=60)

                        AGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTC                                                                      <  SRR4302534.3685457/94‑1 (MQ=60)

                        AGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTC                                                                      >  SRR4302534.1248805/1‑94 (MQ=60)

                        AGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTC                                                                      >  SRR4302534.430979/1‑94 (MQ=60)

                        AGGCATGCTTATCGCCGTCGCTGTATCTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCGCCGGGTC                                                                      <  SRR4302534.6576712/94‑1 (MQ=60)

                         GGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATCCTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCG                                                                     <  SRR4302534.1403397/94‑1 (MQ=60)

                          GCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGT                                                                    >  SRR4302534.2877310/1‑94 (MQ=60)

                          GCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGT                                                                    >  SRR4302534.439431/1‑94 (MQ=60)

                            ATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAG                                                                  >  SRR4302534.3427529/1‑94 (MQ=60)

                            ATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAG                                                                  >  SRR4302534.5422038/1‑94 (MQ=60)

                             TGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGC                                                                 >  SRR4302534.2534829/1‑94 (MQ=60)

                              GCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCC                                                                >  SRR4302534.5188944/1‑94 (MQ=60)

                              GCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCC                                                                >  SRR4302534.2984808/1‑94 (MQ=60)

                               CTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCT                                                               >  SRR4302534.5972838/1‑94 (MQ=60)

                                 TATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTT                                                             >  SRR4302534.1123231/1‑94 (MQ=60)

                                 TATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTT                                                             <  SRR4302534.529335/94‑1 (MQ=60)

                                 TATCGCAGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTT                                                             >  SRR4302534.4182737/1‑94 (MQ=60)

                                  ATTGCGGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCGGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTG                                                            <  SRR4302534.4408036/94‑1 (MQ=60)

                                  ATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTG                                                            <  SRR4302534.3432053/94‑1 (MQ=60)

                                  ATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTG                                                            >  SRR4302534.3451960/1‑94 (MQ=60)

                                  ATCGCCGTCGCTGTATGTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCTCCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTG                                                            <  SRR4302534.3065643/94‑1 (MQ=60)

                                    CGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTTGC                                                          >  SRR4302534.4847075/1‑94 (MQ=60)

                                    CGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGC                                                          >  SRR4302534.5552420/1‑94 (MQ=60)

                                     GCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCC                                                         >  SRR4302534.3166032/1‑94 (MQ=60)

                                      CCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCA                                                        <  SRR4302534.288219/94‑1 (MQ=60)

                                      CCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTACGCCATTTCACCGGGTCGTAGCCTTTGGCCA                                                        >  SRR4302534.1120300/1‑94 (MQ=60)

                                       CGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAG                                                       <  SRR4302534.4057033/94‑1 (MQ=60)

                                       CGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAG                                                       >  SRR4302534.2515000/1‑94 (MQ=60)

                                        GTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGA                                                      >  SRR4302534.5504067/1‑94 (MQ=60)

                                        GTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGA                                                      <  SRR4302534.45312/94‑1 (MQ=60)

                                        CTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTAGCTTTCTTCCGCCATTTCGCCGGGTCGTAGCCTTTGGCCAGA                                                      <  SRR4302534.5289887/94‑1 (MQ=60)

                                           GCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGACTT                                                   <  SRR4302534.6345013/94‑1 (MQ=60)

                                           GCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATT                                                   <  SRR4302534.2709294/94‑1 (MQ=60)

                                           GCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATT                                                   >  SRR4302534.516903/1‑94 (MQ=60)

                                           GCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATT                                                   <  SRR4302534.4013704/94‑1 (MQ=60)

                                            CTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTG                                                  >  SRR4302534.2634587/1‑94 (MQ=60)

                                            CTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTG                                                  <  SRR4302534.303027/94‑1 (MQ=60)

                                             TGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGC                                                 <  SRR4302534.3416195/94‑1 (MQ=60)

                                             TGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCATCCGCCATTTCACCGGGTCGTAGCCTGTGGCCAGAATTGC                                                 >  SRR4302534.6646925/1‑94 (MQ=60)

                                              GTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCC                                                >  SRR4302534.4837201/1‑94 (MQ=60)

                                                ATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTT                                              >  SRR4302534.405637/1‑94 (MQ=60)

                                                 TTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTTACCGGGTCGTtgcccttttgccgaattgtcttc                                             >  SRR4302534.6161736/1‑71 (MQ=60)

                                                  TTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCA                                            >  SRR4302534.4665217/1‑94 (MQ=60)

                                                   TACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCAC                                           <  SRR4302534.3941044/94‑1 (MQ=60)

                                                    ACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACT                                          <  SRR4302534.4948882/94‑1 (MQ=60)

                                                    ACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACT                                          >  SRR4302534.2218838/1‑94 (MQ=60)

                                                    ACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACT                                          <  SRR4302534.5038712/94‑1 (MQ=60)

                                                    ACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACT                                          >  SRR4302534.2987617/1‑94 (MQ=60)

                                                    ACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACT                                          <  SRR4302534.964771/94‑1 (MQ=60)

                                                        CTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTT                                      <  SRR4302534.1039769/94‑1 (MQ=60)

                                                        CTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTT                                      >  SRR4302534.1336233/1‑94 (MQ=60)

                                                           TCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCA                                   >  SRR4302534.4660094/1‑94 (MQ=60)

                                                            CCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCAC                                  <  SRR4302534.1867881/94‑1 (MQ=60)

                                                            CCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTCGCCAGAACTGCCTTCACTTGTTCCAC                                  >  SRR4302534.250342/1‑94 (MQ=60)

                                                             CAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACG                                 >  SRR4302534.2409991/1‑94 (MQ=60)

                                                              AGCTCTTTCAATACTGCGTCCAGCTCCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGG                                >  SRR4302534.5334097/1‑94 (MQ=60)

                                                              AGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCTTAGCCTTTTGCCAGAAGTGACTTCACTTGCTCCACGG                                >  SRR4302534.6040426/1‑94 (MQ=60)

                                                              AGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGG                                <  SRR4302534.2246828/94‑1 (MQ=60)

                                                              AGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGG                                >  SRR4302534.4686227/1‑94 (MQ=60)

                                                               GCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCTCGGT                               >  SRR4302534.4555398/1‑94 (MQ=60)

                                                               GCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGT                               <  SRR4302534.2688585/94‑1 (MQ=60)

                                                                CTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTA                              <  SRR4302534.6237243/94‑1 (MQ=60)

                                                                CTCTTTCAAGACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTA                              >  SRR4302534.6535062/1‑94 (MQ=60)

                                                                 TCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTAT                             <  SRR4302534.883407/94‑1 (MQ=60)

                                                                  CTTTCAATACTGCGTCCAGCACGTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATG                            <  SRR4302534.6228849/94‑1 (MQ=60)

                                                                  CTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATG                            >  SRR4302534.2539359/1‑94 (MQ=60)

                                                                   TTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCCCGGTATGA                           <  SRR4302534.3666925/94‑1 (MQ=60)

                                                                   TTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGA                           <  SRR4302534.1169294/94‑1 (MQ=60)

                                                                   TTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGA                           <  SRR4302534.250943/94‑1 (MQ=60)

                                                                     TCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACC                         <  SRR4302534.4597785/94‑1 (MQ=60)

                                                                      CAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCA                        >  SRR4302534.3658610/1‑94 (MQ=60)

                                                                      CAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCA                        >  SRR4302534.5513543/1‑94 (MQ=60)

                                                                      CAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCA                        >  SRR4302534.6500623/1‑94 (MQ=60)

                                                                       AATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTTCACGGTATGACCAA                       >  SRR4302534.3079911/1‑94 (MQ=60)

                                                                       AATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAA                       >  SRR4302534.3424717/1‑94 (MQ=60)

                                                                       AATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAA                       >  SRR4302534.3401304/1‑94 (MQ=60)

                                                                        ATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAA                      <  SRR4302534.5856031/94‑1 (MQ=60)

                                                                           CTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAAT                   >  SRR4302534.4439489/1‑94 (MQ=60)

                                                                           CTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAAT                   <  SRR4302534.2918628/94‑1 (MQ=60)

                                                                              CGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAA                >  SRR4302534.4435057/1‑94 (MQ=60)

                                                                               GTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAG               >  SRR4302534.3892908/1‑94 (MQ=60)

                                                                               GTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAG               >  SRR4302534.764854/1‑94 (MQ=60)

                                                                                TCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGA              <  SRR4302534.3865838/94‑1 (MQ=60)

                                                                                TCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGA              <  SRR4302534.311909/94‑1 (MQ=60)

                                                                                  CAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATA            <  SRR4302534.6325987/94‑1 (MQ=60)

                                                                                   AGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATAT           <  SRR4302534.2386192/94‑1 (MQ=60)

                                                                                    GCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATATT          <  SRR4302534.3216253/94‑1 (MQ=60)

                                                                                     CACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATATTT         >  SRR4302534.1296504/1‑94 (MQ=60)

                                                                                     CACCTTATCCTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATATTT         >  SRR4302534.6488362/1‑94 (MQ=60)

                                                                                      CCCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATATTTT        <  SRR4302534.803660/94‑1 (MQ=60)

                                                                                      ACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATATTTT        <  SRR4302534.2649680/94‑1 (MQ=60)

                                                                                      ACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATATTTT        >  SRR4302534.2606618/1‑94 (MQ=60)

                                                                                      ACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATATTTT        <  SRR4302534.6357128/94‑1 (MQ=60)

                                                                                       CCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATATTTTC       <  SRR4302534.195466/94‑1 (MQ=60)

                                                                                       CCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATATTTTC       >  SRR4302534.4064233/1‑94 (MQ=60)

                                                                                        CTTATCTTTCTTCCGCCATTTCACCGGGTCGTATCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATATTTTCT      <  SRR4302534.5585801/94‑1 (MQ=60)

                                                                                         TTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATATTTTCTT     >  SRR4302534.4091570/1‑94 (MQ=60)

                                                                                         TTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATATTTTCTT     >  SRR4302534.3680307/1‑94 (MQ=60)

                                                                                         TTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGAATGACCATAAATAAAGATATTTTCTT     >  SRR4302534.2767494/1‑94 (MQ=60)

                                                                                          TATCTTTCTTCCGCCATTTCACCGGGTCTTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATATTTTCTTC    >  SRR4302534.569573/1‑94 (MQ=60)

                                                                                          TATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATATTTTCTTC    <  SRR4302534.2576418/94‑1 (MQ=60)

                                                                                          TATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATATTTTCTTC    >  SRR4302534.6577892/1‑94 (MQ=60)

                                                                                          TATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATATTTTCTTC    <  SRR4302534.5969437/94‑1 (MQ=60)

                                                                                          TATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATATTTTCTTC    >  SRR4302534.900738/1‑94 (MQ=60)

                                                                                          TATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATATTTTCTTC    >  SRR4302534.4633307/1‑94 (MQ=60)

                                                                                          TATCTTTCTCCCGCTATTTCACCGGGTCGTAGCTTTTGGCCAGAATTGCATTCACTTGTACCACGATATGACCAAAAATAAAGATATGTTCTTC    <  SRR4302534.5745224/94‑1 (MQ=60)

                                                                                           ATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATATTTTCTTCA   >  SRR4302534.4581372/1‑94 (MQ=60)

                                                                                            TCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATATTTTCTTCAC  <  SRR4302534.3425675/94‑1 (MQ=60)

CGATACTGTGCAGCATCTGGTCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTACCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAAAAATAAAGATATTTTCTTCAC  >  NC_000913/3547913‑3548098

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`