Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,554,088 |
+C |
coding (2/624 nt) |
yhgKJ ← |
RNA phosphage cyclase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,554,088 | 1 | . | C | 100.0%
| 632.4
/ NA
| 188 | S133W (TCG→TGG) | yhgKJ | RNA phosphage cyclase |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (108/80); total (108/80) |
Only 100 of 219 total aligned reads displayed.
CGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCG‑AGGCGGCGCCGACGGGTTATCGGTCGCCG‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTT > NC_000913/3553996‑3554174
|
cGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCg > 1:5124222/1‑93 (MQ=255)
cGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCg > 2:4200908/1‑93 (MQ=255)
ggCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAAACCgc > 1:5583145/1‑92 (MQ=255)
gCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCgca < 2:883335/93‑3 (MQ=255)
gCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCgca > 1:1592153/1‑91 (MQ=255)
aGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCgcagg > 2:1230993/1‑89 (MQ=255)
aGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCgcagg > 1:1471493/1‑89 (MQ=255)
aGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCgcagg > 2:2914527/1‑89 (MQ=255)
aGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCgcacg > 1:5241663/1‑89 (MQ=255)
aGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATACgcagg > 2:6104824/1‑89 (MQ=255)
ggTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAggcg > 2:5217645/1‑93 (MQ=255)
tAAAAACCGTGGCTTAACAGCGTGTTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCTCCCGGCGGATAAAATCCGCAggcggc < 1:420674/93‑1 (MQ=255)
tAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAggcggc > 2:593379/1‑93 (MQ=255)
aaaaCCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGgcgc < 1:6352418/93‑1 (MQ=255)
agccGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCg < 2:3999951/91‑1 (MQ=255)
aaCCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCg > 1:47820/1‑93 (MQ=255)
ccGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAc > 2:3860898/1‑93 (MQ=255)
ccGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAc < 2:5354649/93‑1 (MQ=255)
cGTGGCGTAACAGCGTAGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACg < 2:1793650/93‑1 (MQ=255)
tGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACggg > 1:4864423/1‑93 (MQ=255)
gTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTAt > 1:6094609/1‑93 (MQ=255)
gTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTAt < 2:581106/93‑1 (MQ=255)
gTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGGTAt > 1:828130/1‑93 (MQ=255)
tAACAGCGTGGTTTGCTGATGAAGTCCTATTTTCGCCAGCAGCGGCTCCAGCGGCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATc < 2:2513232/93‑1 (MQ=255)
aaCAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCg > 1:3733421/1‑93 (MQ=255)
aaCAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCg > 2:4908006/1‑93 (MQ=255)
cAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGt < 2:5164713/93‑1 (MQ=255)
aGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGtg > 1:1991857/1‑92 (MQ=255)
aGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGtg > 2:5761513/1‑92 (MQ=255)
gCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGtgc > 2:4343919/1‑91 (MQ=255)
gCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGtgc > 2:661121/1‑91 (MQ=255)
gCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGtgc < 1:5432398/93‑3 (MQ=255)
gCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGtgc < 1:2860963/93‑3 (MQ=255)
gCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGtgc > 1:3898669/1‑91 (MQ=255)
cGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGtgcc < 1:5749945/93‑4 (MQ=255)
ggTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑cc > 1:2011230/1‑92 (MQ=255)
ggTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTggcgcc > 2:463756/1‑90 (MQ=255)
gTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑ccg > 2:2438865/1‑91 (MQ=255)
ttGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑ccgct < 1:1096755/93‑5 (MQ=255)
tgatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACt > 2:6020763/1‑93 (MQ=255)
tgatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACt > 2:3942883/1‑93 (MQ=255)
gatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACtt > 1:2759401/1‑93 (MQ=255)
atgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTc < 2:4993785/93‑1 (MQ=255)
tgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCa > 1:2547920/1‑93 (MQ=255)
tgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGGTATCGGT‑GCCGCCGCTCACTTCa > 2:213417/1‑93 (MQ=255)
aaTTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAac > 1:3305822/1‑93 (MQ=255)
aTTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAaca > 2:839653/1‑93 (MQ=255)
ttCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAacac > 1:5463871/1‑93 (MQ=255)
ttCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAacac > 2:2817341/1‑93 (MQ=255)
ccTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACAcgc > 2:4603073/1‑93 (MQ=255)
cTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACAcgcg > 1:2797909/1‑93 (MQ=255)
tATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGa > 1:5922204/1‑93 (MQ=255)
tATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGa > 2:3653284/1‑93 (MQ=255)
tATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGa > 2:2855598/1‑93 (MQ=255)
aTTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCTC‑CGCTCACTTCAACACGCGaa < 1:5631147/93‑1 (MQ=255)
aTTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGaa < 1:3823403/93‑1 (MQ=255)
ttCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGt < 1:2334048/93‑1 (MQ=255)
cgcgAGCAGCGGCTCCAGCACCCGGCGGATAAAGTCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTcc < 2:1154584/93‑1 (MQ=255)
cGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTcc > 1:3394840/1‑93 (MQ=255)
cGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTcc < 2:5842689/93‑1 (MQ=255)
gCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCa > 1:1951941/1‑93 (MQ=255)
ccAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCAt > 1:1201592/1‑93 (MQ=255)
cagcagCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATc < 1:3520429/93‑1 (MQ=255)
cagcagCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATc < 1:930756/93‑1 (MQ=255)
agcagcGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCg > 2:4802773/1‑93 (MQ=255)
agcaccGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCg < 1:4326327/93‑1 (MQ=255)
agcGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCa > 1:5259730/1‑93 (MQ=255)
gcGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCaa > 2:2783244/1‑93 (MQ=255)
gcGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCaa > 2:1881167/1‑93 (MQ=255)
cGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCaaa < 1:4422891/93‑1 (MQ=255)
gccTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAAc < 2:6161572/91‑1 (MQ=255)
gCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTAACGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAAcc > 1:3205282/1‑93 (MQ=255)
ctgcAGCCCCCGGCAGATAAAAACCGCCTGCGGGGCCGCCTGGTTTACGGGTCCGC‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACca < 1:2026094/90‑1 (MQ=255)
tCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACcac > 2:5504474/1‑93 (MQ=255)
ccAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACcaca < 2:5653024/93‑1 (MQ=255)
ccAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACcaca > 2:1522341/1‑93 (MQ=255)
ccAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACcaca > 1:2148228/1‑93 (MQ=255)
cAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAg > 1:1318593/1‑93 (MQ=255)
cAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGAT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAg < 1:5226284/93‑1 (MQ=255)
aGCCCCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAgc < 2:104702/93‑1 (MQ=255)
aGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAgc > 1:3513141/1‑93 (MQ=255)
gCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAgcg > 1:3263347/1‑93 (MQ=255)
cACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAgcgc < 2:6393934/93‑1 (MQ=255)
cACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAgcgc < 2:4778157/93‑1 (MQ=255)
ccccGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGcgcg < 2:457501/92‑1 (MQ=255)
cccGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCgg < 1:5838846/93‑1 (MQ=255)
ccGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGG‑GGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGgggg > 2:1949706/1‑93 (MQ=255)
cggcggATAAAACCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgc < 1:3910415/93‑1 (MQ=255)
ggcggATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCAATTCAACACGCGAAGGTCCATCGGCAAACCACACCGCGGgca > 2:273109/1‑93 (MQ=255)
gcggATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGTCGCTCACTTCAACACGCGACAGTCCATCGGCAAACCACATAGCGGgcag > 1:1527719/1‑93 (MQ=255)
gcggATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgcag > 2:2212730/1‑93 (MQ=255)
ggATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgcagca > 2:318246/1‑93 (MQ=255)
gATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAc < 2:1966401/93‑1 (MQ=255)
aaaaTCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGt > 1:39986/1‑93 (MQ=255)
aaaaTCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGt > 1:5166347/1‑93 (MQ=255)
aaaaTCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGt < 1:530792/93‑1 (MQ=255)
aaaaTCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGt < 2:172815/93‑1 (MQ=255)
aaaaTCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGt < 2:6344931/93‑1 (MQ=255)
aaaTCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGtt > 2:3540471/1‑93 (MQ=255)
aaaTCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGtt < 2:2678416/93‑1 (MQ=255)
|
CGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCG‑AGGCGGCGCCGACGGGTTATCGGTCGCCG‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTT > NC_000913/3553996‑3554174
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCG‑AGGCGGCGCCGACGGGTTATCGGT‑‑CGCC‑G‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGC > NC_000913/3553995‑3554176
|
CCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCG > SRR4302534.5262584/1‑94 (MQ=60)
GGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGca > SRR4302534.1633784/1‑92 (MQ=60)
GCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGcag < SRR4302534.2923910/94‑4 (MQ=60)
GCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGcag < SRR4302534.5941489/94‑4 (MQ=60)
CAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGcacg > SRR4302534.5383206/1‑90 (MQ=60)
CAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGG > SRR4302534.3783482/1‑94 (MQ=60)
CAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGG > SRR4302534.1510196/1‑94 (MQ=60)
AGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGC > SRR4302534.2079450/1‑94 (MQ=60)
AGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGC > SRR4302534.4931189/1‑94 (MQ=60)
GGGTAAAACCCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCG < SRR4302534.37442/94‑1 (MQ=60)
GGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCG < SRR4302534.3255138/94‑1 (MQ=60)
GGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGG < SRR4302534.1628244/94‑1 (MQ=60)
GTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGC < SRR4302534.3880128/94‑1 (MQ=60)
TAAAAACCGTGGCTTAACAGCGTGTTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCTCCCGGCGGATAAAATCCGCAGGCGGCG < SRR4302534.431431/94‑1 (MQ=60)
AAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGC > SRR4302534.2388651/1‑94 (MQ=60)
AAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCC < SRR4302534.6523971/94‑1 (MQ=60)
AAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCC > SRR4302534.869898/1‑94 (MQ=60)
AAAACCGTGACGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCC > SRR4302534.4032360/1‑94 (MQ=60)
AAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCG > SRR4302534.49101/1‑94 (MQ=60)
CGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCCCCCGGCGGATAAAATCCGCAGGCGGCGCCGACGG < SRR4302534.4953598/94‑1 (MQ=60)
GTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGG > SRR4302534.4996379/1‑94 (MQ=60)
CGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTAT > SRR4302534.382794/1‑94 (MQ=60)
CGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTAT > SRR4302534.6260347/1‑94 (MQ=60)
CGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGGTAT > SRR4302534.848971/1‑94 (MQ=60)
CGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCCGCGGATAAAATCCGCAGGCGGCGCCGGCGGGTTAT > SRR4302534.1148681/1‑94 (MQ=60)
TAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGGGGGGGTATCG > SRR4302534.400942/1‑94 (MQ=60)
TAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCG > SRR4302534.3833728/1‑94 (MQ=60)
TAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCG > SRR4302534.4318041/1‑94 (MQ=60)
TAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCG < SRR4302534.186953/94‑1 (MQ=60)
AACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGG > SRR4302534.227318/1‑94 (MQ=60)
ACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT > SRR4302534.3975001/1‑94 (MQ=60)
ACAGCGTGATTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT < SRR4302534.4679870/94‑1 (MQ=60)
CAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑G > SRR4302534.2074354/1‑94 (MQ=60)
CAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑G > SRR4302534.2044010/1‑94 (MQ=60)
AGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTgc > SRR4302534.4003275/1‑92 (MQ=60)
GCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCCCCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC < SRR4302534.85404/94‑1 (MQ=60)
GCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC > SRR4302534.1719240/1‑94 (MQ=60)
GCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC < SRR4302534.5578655/94‑1 (MQ=60)
GCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC < SRR4302534.5760395/94‑1 (MQ=60)
GCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC < SRR4302534.2936106/94‑1 (MQ=60)
CGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑G > SRR4302534.5588313/1‑94 (MQ=60)
CGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑G < SRR4302534.5905862/94‑1 (MQ=60)
CGTGGTATGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGAGCCGACGGGATATCGGT‑‑‑GCC‑G > SRR4302534.2501117/1‑94 (MQ=60)
TGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCC > SRR4302534.2063844/1‑94 (MQ=60)
TTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTgccgccgctc < SRR4302534.1125308/94‑11 (MQ=60)
TGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCA < SRR4302534.4764092/94‑1 (MQ=60)
TGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCA > SRR4302534.2711091/1‑94 (MQ=60)
GCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCAC < SRR4302534.3098765/94‑1 (MQ=60)
TGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCTGATAAAATCCGcacgacgcgcccagacgttatcggtgtcgccgcttcctc > SRR4302534.5847662/1‑55 (MQ=60)
TGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTT < SRR4302534.4128208/94‑1 (MQ=60)
TGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTT > SRR4302534.2832086/1‑94 (MQ=60)
ATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCA > SRR4302534.2615480/1‑94 (MQ=60)
GAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAAC > SRR4302534.3394083/1‑94 (MQ=60)
ATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACAC > SRR4302534.5611146/1‑94 (MQ=60)
ATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACAC < SRR4302534.6588016/94‑1 (MQ=60)
CCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCG > SRR4302534.2871493/1‑94 (MQ=60)
CCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCG > SRR4302534.1387568/1‑94 (MQ=60)
CTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGA > SRR4302534.5435017/1‑94 (MQ=60)
CTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGA > SRR4302534.6083003/1‑94 (MQ=60)
TATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACCCGAA > SRR4302534.6067344/1‑94 (MQ=60)
ATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑GCCT‑C‑CGCTCACTTCAACACGCGAAG < SRR4302534.5783552/94‑1 (MQ=60)
ATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAG > SRR4302534.501389/1‑94 (MQ=60)
ATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAG < SRR4302534.3926110/94‑1 (MQ=60)
TTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGG > SRR4302534.333667/1‑94 (MQ=60)
TTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTC < SRR4302534.5644584/94‑1 (MQ=60)
TTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTC < SRR4302534.2395963/94‑1 (MQ=60)
TTCCCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTC < SRR4302534.5235143/94‑1 (MQ=60)
TCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCC > SRR4302534.3485931/1‑94 (MQ=60)
TCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCC > SRR4302534.5956941/1‑94 (MQ=60)
CGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCA > SRR4302534.3519383/1‑94 (MQ=60)
CGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCA > SRR4302534.2003024/1‑94 (MQ=60)
GCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCAT > SRR4302534.1233212/1‑94 (MQ=60)
GCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCAT < SRR4302534.637952/94‑1 (MQ=60)
CCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATC > SRR4302534.3393394/1‑94 (MQ=60)
CAGGAGCGTCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGGCGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCG < SRR4302534.5330635/94‑1 (MQ=60)
CAGCAGCGGCTCCAGCCCCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGG‑‑‑CGCCAC‑CGCTCACTTCAACACGCGAAGGTCCATCG < SRR4302534.4353875/94‑1 (MQ=60)
CAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCG < SRR4302534.3615123/94‑1 (MQ=60)
CAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCG > SRR4302534.1541410/1‑94 (MQ=60)
CAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCG < SRR4302534.954434/94‑1 (MQ=60)
AGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGG > SRR4302534.2044306/1‑94 (MQ=60)
AGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGGCCATCGG > SRR4302534.5548341/1‑94 (MQ=60)
AGCACCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGG < SRR4302534.4443365/94‑1 (MQ=60)
CAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCA > SRR4302534.5401851/1‑94 (MQ=60)
AGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGAGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGGCCATCGGCAA > SRR4302534.4411591/1‑94 (MQ=60)
CGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAAC < SRR4302534.4542305/94‑1 (MQ=60)
GGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACC < SRR4302534.2855433/94‑1 (MQ=60)
GGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTAACGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACC > SRR4302534.3290281/1‑94 (MQ=60)
TCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACA < SRR4302534.3018864/94‑1 (MQ=60)
TCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACA > SRR4302534.2204914/1‑94 (MQ=60)
TCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACA < SRR4302534.3614184/94‑1 (MQ=60)
CCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAG > SRR4302534.1353365/1‑94 (MQ=60)
CAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGC > SRR4302534.3607650/1‑94 (MQ=60)
CAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGAT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGC < SRR4302534.5367361/94‑1 (MQ=60)
ATCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCG < SRR4302534.2042303/94‑1 (MQ=60)
AGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCG < SRR4302534.5285295/94‑1 (MQ=60)
AGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCG > SRR4302534.3350247/1‑94 (MQ=60)
CCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGG < SRR4302534.5997351/94‑1 (MQ=60)
CGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCA > SRR4302534.5883203/1‑94 (MQ=60)
CGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCA > SRR4302534.4461538/1‑94 (MQ=60)
CGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCA > SRR4302534.3420166/1‑94 (MQ=60)
CGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCA > SRR4302534.5391380/1‑94 (MQ=60)
CGGCGGATAAAACCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCA < SRR4302534.4015268/94‑1 (MQ=60)
GGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAG > SRR4302534.1347068/1‑94 (MQ=60)
GGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAG < SRR4302534.2095726/94‑1 (MQ=60)
CGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GTCGCTCACTTCAACACGCGACAGTCCATCGGCAAACCACATAGCGGGCAG > SRR4302534.1567820/1‑94 (MQ=55)
CGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCA > SRR4302534.5411111/1‑94 (MQ=60)
ATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCG > SRR4302534.6154306/1‑94 (MQ=60)
TAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGT > SRR4302534.4866040/1‑94 (MQ=60)
TAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGT > SRR4302534.41055/1‑94 (MQ=60)
TAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGT > SRR4302534.5305604/1‑94 (MQ=60)
AAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTT < SRR4302534.543973/94‑1 (MQ=60)
AAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTT < SRR4302534.5382404/94‑1 (MQ=60)
AATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTG < SRR4302534.3554958/94‑1 (MQ=60)
ATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGC > SRR4302534.1356418/1‑94 (MQ=60)
ATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC‑GCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGC > SRR4302534.980745/1‑94 (MQ=60)
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CCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCG‑AGGCGGCGCCGACGGGTTATCGGT‑‑CGCC‑G‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGC > NC_000913/3553995‑3554176
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
