Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,575,446	+G	coding (912/942 nt)	gntR ←	GntR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,575,445	1	.	G	100.0%	759.1 / NA	218	C305R (TGC→CGC)	gntR	GntR
Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (125/93); total (125/93)

Only 100 of 241 total aligned reads displayed.

ATTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑GCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACC  >  NC_000913/3575353‑3575532

aTTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca                                                                                          >  2:4381528/1‑93 (MQ=255)

 tttGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca‑g                                                                                        <  1:4897518/93‑1 (MQ=255)

   tgtgGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca‑ggc                                                                                      >  1:5636186/1‑91 (MQ=255)

   tgtgGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca‑ggc                                                                                      <  2:5469120/93‑3 (MQ=255)

    gtgGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca‑ggcg                                                                                     >  2:2342855/1‑90 (MQ=255)

    gtgGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca‑ggcg                                                                                     <  2:3706238/93‑4 (MQ=255)

    gtgGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca‑ggcg                                                                                     >  1:1898209/1‑90 (MQ=255)

       ggCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTc                                                                                   <  1:354132/93‑1 (MQ=255)

        gCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCa                                                                                  <  2:5022554/93‑1 (MQ=255)

        gCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCa                                                                                  <  1:3182360/93‑1 (MQ=255)

          ttAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAgc                                                                                >  2:1106712/1‑93 (MQ=255)

           tAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAgcg                                                                               >  1:3080122/1‑93 (MQ=255)

            aaaTAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAgcgc                                                                              <  2:6428333/93‑1 (MQ=255)

            aaaTAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAgcgc                                                                              >  2:2377599/1‑93 (MQ=255)

             aaTAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACTAATACGCGCCAGCAGGCGTTCAGCGcc                                                                             >  1:3910118/1‑93 (MQ=255)

             aaTAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGcc                                                                             >  2:5070821/1‑93 (MQ=255)

             aaTAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGcc                                                                             <  1:4719312/93‑1 (MQ=255)

             aaTAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGcc                                                                             >  2:160475/1‑93 (MQ=255)

              aTAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCa                                                                            <  1:3246503/93‑1 (MQ=255)

              aTAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCa                                                                            >  2:5210895/1‑93 (MQ=255)

                aGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAAt                                                                          >  1:4989827/1‑93 (MQ=255)

                aGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAAt                                                                          <  2:851162/93‑1 (MQ=255)

                 gATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATa                                                                         <  2:4022219/93‑1 (MQ=255)

                   tCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACt                                                                       >  2:379619/1‑93 (MQ=255)

                   tCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACt                                                                       >  2:3352991/1‑93 (MQ=255)

                   tCCGCCCGGGGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACt                                                                       >  1:4266996/1‑93 (MQ=255)

                     cGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTGCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGc                                                                     <  2:1052977/93‑1 (MQ=255)

                      gCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATCCGCGCCAGCAGGCGTTCAGCGCCAATACTGcc                                                                    <  2:3309234/93‑1 (MQ=255)

                        ccGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCa                                                                  >  1:1021754/1‑93 (MQ=255)

                         cGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCAt                                                                 <  1:5694757/93‑1 (MQ=255)

                           gTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATcc                                                               <  1:1432806/93‑1 (MQ=255)

                           gTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATcc                                                               <  1:6403248/93‑1 (MQ=255)

                           gTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATcc                                                               <  1:3124856/93‑1 (MQ=255)

                            taaCAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCg                                                              <  1:1604719/91‑1 (MQ=255)

                            tGACAAGGTGAAACCTAAATCGAACATATTCGGTGTCACAGAATCGCCACGAATACGCGCCAGCAGGCGGTCAGCGCCAATACTGCCCATCCg                                                              >  1:6470993/1‑93 (MQ=255)

                               cAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTc                                                           <  1:3007686/93‑1 (MQ=255)

                                aaGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCa                                                          >  2:1964360/1‑93 (MQ=255)

                                 aGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAc                                                         >  1:96846/1‑93 (MQ=255)

                                 aGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAc                                                         >  2:4467393/1‑93 (MQ=255)

                                  ggTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAcg                                                        >  2:3145543/1‑93 (MQ=255)

                                      aaaCCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACgcggc                                                    <  1:4489377/93‑1 (MQ=255)

                                       aaCCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACgcggcg                                                   >  1:4383912/1‑93 (MQ=255)

                                        aCCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGt                                                  <  2:2127583/93‑1 (MQ=255)

                                          cTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCa                                                >  2:4894623/1‑93 (MQ=255)

                                          cTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCa                                                >  2:5686896/1‑93 (MQ=255)

                                          cTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCa                                                <  2:6286569/93‑1 (MQ=255)

                                           tAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCac                                               >  1:2031322/1‑92 (MQ=255)

                                            aaaTCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGc                                              >  1:5449030/1‑93 (MQ=255)

                                            aaaTCTAACATTTTCGGTGTCACAGATTAGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCCTCAGc                                              >  1:5210755/1‑93 (MQ=255)

                                             aaTCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCa                                             <  2:4730576/93‑1 (MQ=255)

                                             aaTCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCa                                             >  2:1368428/1‑93 (MQ=255)

                                              aTCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCGAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCAc                                            >  2:3448931/1‑93 (MQ=255)

                                              aTCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCAc                                            <  2:2075818/93‑1 (MQ=255)

                                               tCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACg                                           >  2:4707212/1‑93 (MQ=255)

                                               tCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACg                                           <  2:5601220/93‑1 (MQ=255)

                                                 tAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCt                                         >  1:4065385/1‑93 (MQ=255)

                                                      ttttCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCaa                                    <  2:5954353/93‑1 (MQ=255)

                                                      ttttCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCaa                                    <  2:2176483/93‑1 (MQ=255)

                                                       tttCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAg                                   >  2:422018/1‑93 (MQ=255)

                                                        ttCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGt                                  <  2:2755728/93‑1 (MQ=255)

                                                         tCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTc                                 <  1:4328037/93‑1 (MQ=255)

                                                         tCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTc                                 >  1:2675243/1‑93 (MQ=255)

                                                            gtgtCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCATCGCCAATACTGCCCATACGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTg                              >  2:928960/1‑93 (MQ=255)

                                                            gtgtCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTg                              <  2:2643706/93‑1 (MQ=255)

                                                            gtgtCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTg                              <  1:3919628/93‑1 (MQ=255)

                                                            gtgtCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTg                              >  2:2858173/1‑93 (MQ=255)

                                                               tCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCt                           >  1:1234380/1‑93 (MQ=255)

                                                                  caGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCa                        >  2:4867123/1‑93 (MQ=255)

                                                                  caGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCa                        <  2:1247667/93‑1 (MQ=255)

                                                                  caGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCa                        >  1:805266/1‑93 (MQ=255)

                                                                   aGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCAt                       >  1:5973659/1‑93 (MQ=255)

                                                                    gATGCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATc                      <  1:3263620/93‑1 (MQ=255)

                                                                     aTTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCa                     >  2:3879204/1‑93 (MQ=255)

                                                                     aTTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCa                     <  2:6380588/93‑1 (MQ=255)

                                                                      ttCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATAATGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCAc                    >  1:5178045/1‑93 (MQ=255)

                                                                       tCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCGcc                   >  1:2733369/1‑93 (MQ=255)

                                                                       tCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCAcc                   <  1:6287200/93‑1 (MQ=255)

                                                                       tCGCCACGAATACGCGCCACCAGGCGTTCAGCGCCAATACTGCCCATCCGCGCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCAcc                   <  1:1748672/93‑1 (MQ=255)

                                                                        cGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCt                  <  1:5353593/93‑1 (MQ=255)

                                                                         gCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTg                 >  1:136272/1‑93 (MQ=255)

                                                                          ccACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGa                <  1:435103/93‑1 (MQ=255)

                                                                           cACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGAc               <  1:344525/93‑1 (MQ=255)

                                                                            aCGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGAcc              >  1:1991847/1‑93 (MQ=255)

                                                                            aCGAATACGCGCCAGCAGGCGTTCAGAGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGAcc              >  2:2279785/1‑93 (MQ=255)

                                                                             cGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCa             >  2:773815/1‑93 (MQ=255)

                                                                              gAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCaa            <  2:2473242/93‑1 (MQ=255)

                                                                               aaTACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAAt           <  2:892151/93‑1 (MQ=255)

                                                                                aTACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCTATg          >  1:2932004/1‑93 (MQ=255)

                                                                                aTACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCCATg          >  1:4626212/1‑93 (MQ=255)

                                                                                aTACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATg          <  2:2455918/93‑1 (MQ=255)

                                                                                 tACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGt         <  1:2426836/93‑1 (MQ=255)

                                                                                 tACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGt         >  1:2100082/1‑93 (MQ=255)

                                                                                  aCGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTc        >  2:1695502/1‑93 (MQ=255)

                                                                                   cgcgCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCa       <  2:1853179/93‑1 (MQ=255)

                                                                                    gcgcCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGCCTCCATCACCTGACCAATGTCAt      <  1:440238/93‑1 (MQ=255)

                                                                                      gcCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGa    <  1:5293872/93‑1 (MQ=255)

                                                                                      gcCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGa    >  1:5896154/1‑93 (MQ=255)

                                                                                       ccAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGAc   <  2:5589500/93‑1 (MQ=255)

                                                                                       ccAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGAc   >  2:2007087/1‑93 (MQ=255)

                                                                                        cagcagGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGAcc  <  2:3179064/93‑1 (MQ=255)

ATTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑GCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACC  >  NC_000913/3575353‑3575532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑G‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGGAA  >  NC_000913/3575354‑3575538

TTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑G‑G                                                                                             >  SRR4302534.1456406/1‑94 (MQ=60)

TTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑G‑G                                                                                             <  SRR4302534.5030294/94‑1 (MQ=60)

 TTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑Ggc                                                                                             >  SRR4302534.5788737/1‑92 (MQ=60)

  TGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑Ggcg                                                                                            >  SRR4302534.1947712/1‑91 (MQ=60)

    TGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTT                                                                                          >  SRR4302534.3504504/1‑94 (MQ=60)

    TGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTT                                                                                          >  SRR4302534.5084676/1‑94 (MQ=60)

      GGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCA                                                                                        >  SRR4302534.1163921/1‑94 (MQ=60)

      GGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCA                                                                                        <  SRR4302534.363195/94‑1 (MQ=60)

       GCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAG                                                                                       <  SRR4302534.3266462/94‑1 (MQ=60)

        CTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGC                                                                                      <  SRR4302534.2358004/94‑1 (MQ=60)

         TTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCG                                                                                     >  SRR4302534.3161050/1‑94 (MQ=60)

           AAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACTAATACGCGCCAGCAGG‑CGTTCAGCGCC                                                                                   >  SRR4302534.4014961/1‑94 (MQ=60)

            AATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCA                                                                                  <  SRR4302534.4847478/94‑1 (MQ=60)

             ATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAA                                                                                 <  SRR4302534.3332942/94‑1 (MQ=60)

              TAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAAT                                                                                >  SRR4302534.5124825/1‑94 (MQ=60)

               AGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATA                                                                               >  SRR4302534.2454050/1‑94 (MQ=60)

               AGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATA                                                                               >  SRR4302534.2971683/1‑94 (MQ=60)

               AGATCCGCCCGGTGACAAGGCGAAACCTAAATCTAACATTTTGGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑GTGGTTCAGCGCCAATC                                                                               >  SRR4302534.1490573/1‑94 (MQ=60)

                 ATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACT                                                                             <  SRR4302534.96537/94‑1 (MQ=60)

                 ATCCGCCCGGGGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACT                                                                             >  SRR4302534.4382271/1‑94 (MQ=60)

                   CCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGC                                                                           >  SRR4302534.140416/1‑94 (MQ=60)

                    CGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCC                                                                          <  SRR4302534.4562365/94‑1 (MQ=60)

                    CGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGAC                                                                          >  SRR4302534.2768300/1‑94 (MQ=60)

                      CCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCA                                                                        >  SRR4302534.1048067/1‑94 (MQ=60)

                       CCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCAT                                                                       >  SRR4302534.3702284/1‑94 (MQ=60)

                       CCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCAT                                                                       >  SRR4302534.5372249/1‑94 (MQ=60)

                        CGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATC                                                                      <  SRR4302534.5849027/94‑1 (MQ=60)

                        CGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATC                                                                      >  SRR4302534.3121520/1‑94 (MQ=60)

                         GGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCC                                                                     <  SRR4302534.1016193/94‑1 (MQ=60)

                         GGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCC                                                                     <  SRR4302534.714950/94‑1 (MQ=60)

                          GTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCG                                                                    <  SRR4302534.6576116/94‑1 (MQ=60)

                          GTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCG                                                                    <  SRR4302534.3207009/94‑1 (MQ=60)

                          GTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCG                                                                    <  SRR4302534.1470515/94‑1 (MQ=60)

                          GTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCG                                                                    >  SRR4302534.6118066/1‑94 (MQ=60)

                          GTGACAAGGTGAAACCTAAATCGAACATATTCGGTGTCACAGAATCGCCACGAATACGCGCCAGCAGG‑CGGTCAGCGCCAATACTGCCCATCCG                                                                    >  SRR4302534.6645293/1‑94 (MQ=60)

                           TAACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGC                                                                   <  SRR4302534.1646634/94‑1 (MQ=60)

                            GACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCT                                                                  >  SRR4302534.3021374/1‑94 (MQ=60)

                              CAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCA                                                                <  SRR4302534.3086375/94‑1 (MQ=60)

                               AAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCAC                                                               >  SRR4302534.4408319/1‑94 (MQ=60)

                               AAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCAC                                                               >  SRR4302534.99435/1‑94 (MQ=60)

                                   TGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGG                                                           <  SRR4302534.1827104/94‑1 (MQ=60)

                                     AAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCG                                                         <  SRR4302534.4610858/94‑1 (MQ=60)

                                     AAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCG                                                         >  SRR4302534.4502102/1‑94 (MQ=60)

                                      AACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGT                                                        >  SRR4302534.5638908/1‑94 (MQ=60)

                                      AACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGT                                                        <  SRR4302534.6554795/94‑1 (MQ=60)

                                         CTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAC                                                     >  SRR4302534.2084441/1‑94 (MQ=60)

                                          TAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGC                                                    >  SRR4302534.5595839/1‑94 (MQ=60)

                                          TAAATCTAACATTTTCGGTGTCACAGATTAGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCCTCAGC                                                    >  SRR4302534.5351387/1‑94 (MQ=60)

                                            AATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCAC                                                  >  SRR4302534.5622363/1‑94 (MQ=60)

                                            AATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCAC                                                  >  SRR4302534.3956812/1‑94 (MQ=60)

                                               CTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCT                                               >  SRR4302534.4512154/1‑94 (MQ=60)

                                               CTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCT                                               >  SRR4302534.4174457/1‑94 (MQ=60)

                                               CTAACATTGTCGGTGTCACGCATTCGCCACGAATGCGCGCCACCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGACAGCACGCT                                               <  SRR4302534.2513806/94‑1 (MQ=60)

                                                TAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTC                                              >  SRR4302534.474956/1‑94 (MQ=60)

                                                 AACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCG                                             >  SRR4302534.3195696/1‑94 (MQ=60)

                                                     TTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAG                                         <  SRR4302534.785119/94‑1 (MQ=60)

                                                       TTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTC                                       >  SRR4302534.2745980/1‑94 (MQ=60)

                                                        TCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCG                                      <  SRR4302534.4445107/94‑1 (MQ=60)

                                                         CGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGT                                     >  SRR4302534.5210485/1‑94 (MQ=60)

                                                           GTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGG                                   >  SRR4302534.5413317/1‑94 (MQ=60)

                                                           GTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGG                                   <  SRR4302534.4024672/94‑1 (MQ=60)

                                                             GTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCT                                 <  SRR4302534.5562779/94‑1 (MQ=60)

                                                             GTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCT                                 <  SRR4302534.2870596/94‑1 (MQ=60)

                                                             GTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCT                                 >  SRR4302534.1266909/1‑94 (MQ=60)

                                                             GTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCT                                 <  SRR4302534.3093455/94‑1 (MQ=60)

                                                              TCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTC                                <  SRR4302534.3246775/94‑1 (MQ=60)

                                                              TCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTC                                >  SRR4302534.4624153/1‑94 (MQ=60)

                                                                ACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCA                              >  SRR4302534.825498/1‑94 (MQ=60)

                                                                ACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCA                              >  SRR4302534.1745461/1‑94 (MQ=60)

                                                                ACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCA                              <  SRR4302534.5854633/94‑1 (MQ=60)

                                                                ACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCA                              >  SRR4302534.1997413/1‑94 (MQ=60)

                                                                 CAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCAT                             >  SRR4302534.6135908/1‑94 (MQ=60)

                                                                  AGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCAca                            >  SRR4302534.658042/1‑92 (MQ=60)

                                                                  AGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATC                            >  SRR4302534.5836762/1‑94 (MQ=60)

                                                                   GATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCA                           >  SRR4302534.132481/1‑94 (MQ=60)

                                                                   GATGCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCA                           <  SRR4302534.3350531/94‑1 (MQ=60)

                                                                    ATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATAATGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCAC                          >  SRR4302534.5317560/1‑94 (MQ=60)

                                                                     TTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCGCC                         >  SRR4302534.2805434/1‑94 (MQ=60)

                                                                     TCCGCCACGAATCCGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACC                         <  SRR4302534.3377778/94‑1 (MQ=60)

                                                                      TCGCCACGAATACGCGCCAGCAGG‑CGTTCAGGGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCT                        >  SRR4302534.157585/1‑94 (MQ=60)

                                                                      TCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCT                        <  SRR4302534.6457307/94‑1 (MQ=60)

                                                                      TCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCT                        >  SRR4302534.4445655/1‑94 (MQ=60)

                                                                      TCGCCACGAATACGCGCCACCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCGCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCT                        <  SRR4302534.1794054/94‑1 (MQ=60)

                                                                       CGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTG                       <  SRR4302534.3572205/94‑1 (MQ=60)

                                                                       CGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTG                       <  SRR4302534.4480433/94‑1 (MQ=60)

                                                                       CGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTG                       <  SRR4302534.1709232/94‑1 (MQ=60)

                                                                       CGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTG                       >  SRR4302534.139840/1‑94 (MQ=60)

                                                                       CGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTG                       <  SRR4302534.5497925/94‑1 (MQ=60)

                                                                        GCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGA                      >  SRR4302534.3321870/1‑94 (MQ=60)

                                                                         CCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGAC                     >  SRR4302534.5471883/1‑94 (MQ=60)

                                                                         CCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGAC                     <  SRR4302534.4767887/94‑1 (MQ=60)

                                                                         CCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGAC                     <  SRR4302534.446200/94‑1 (MQ=60)

                                                                          CACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACC                    >  SRR4302534.4561101/1‑94 (MQ=60)

                                                                          CACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACC                    >  SRR4302534.2044000/1‑94 (MQ=60)

                                                                          CACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACC                    >  SRR4302534.4115480/1‑94 (MQ=60)

                                                                          CACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACC                    >  SRR4302534.401518/1‑94 (MQ=60)

                                                                          CACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACC                    >  SRR4302534.2139386/1‑94 (MQ=60)

                                                                          CACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACC                    >  SRR4302534.6224996/1‑94 (MQ=60)

                                                                          CACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACC                    <  SRR4302534.353353/94‑1 (MQ=60)

                                                                           ACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCA                   <  SRR4302534.4363580/94‑1 (MQ=60)

                                                                           ACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCA                   <  SRR4302534.4259271/94‑1 (MQ=60)

                                                                             GAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCCAT                 >  SRR4302534.3368412/1‑94 (MQ=60)

                                                                             GAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAAT                 <  SRR4302534.2074307/94‑1 (MQ=60)

                                                                             GAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAAT                 >  SRR4302534.5327483/1‑94 (MQ=60)

                                                                              AATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCTATG                >  SRR4302534.3008973/1‑94 (MQ=60)

                                                                              AATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCCATG                >  SRR4302534.4751734/1‑94 (MQ=60)

                                                                              AATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATG                <  SRR4302534.5143279/94‑1 (MQ=60)

                                                                               ATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGT               >  SRR4302534.2155199/1‑94 (MQ=60)

                                                                               ATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGT               >  SRR4302534.3266589/1‑94 (MQ=60)

                                                                                TACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTC              <  SRR4302534.2491363/94‑1 (MQ=60)

                                                                                 ACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCA             >  SRR4302534.2072999/1‑94 (MQ=60)

                                                                                 ACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCA             <  SRR4302534.3346868/94‑1 (MQ=60)

                                                                                 ACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCA             <  SRR4302534.4465284/94‑1 (MQ=60)

                                                                                 ACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCA             <  SRR4302534.6251103/94‑1 (MQ=60)

                                                                                  CGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCAT            <  SRR4302534.4864634/94‑1 (MQ=60)

                                                                                   GCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATG           >  SRR4302534.5858420/1‑94 (MQ=60)

                                                                                   GCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGCCTCCATCACCTGACCAATGTCATG           <  SRR4302534.451433/94‑1 (MQ=60)

                                                                                    CGCCAGCAGG‑CGTTCAGCGCGAATACTGACCATCCGCTCACGCGGCGTCAGCACGCCCGCAAGCCGTCGCTCCATCACCTGACCAATGTCATGT          >  SRR4302534.3135605/1‑94 (MQ=60)

                                                                                    CGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGA          >  SRR4302534.6056250/1‑94 (MQ=60)

                                                                                    CGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGA          <  SRR4302534.2533214/94‑1 (MQ=60)

                                                                                     GCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGAC         <  SRR4302534.5436766/94‑1 (MQ=60)

                                                                                       CAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTTATGACCG       >  SRR4302534.704617/1‑94 (MQ=60)

                                                                                       CAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCG       >  SRR4302534.2669413/1‑94 (MQ=60)

                                                                                       CAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCG       >  SRR4302534.5929546/1‑94 (MQ=60)

                                                                                       CAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCG       >  SRR4302534.2658572/1‑94 (MQ=60)

                                                                                       CAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCG       <  SRR4302534.505703/94‑1 (MQ=60)

                                                                                       CAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCG       >  SRR4302534.5526669/1‑94 (MQ=60)

                                                                                         GCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTG     <  SRR4302534.2673656/94‑1 (MQ=60)

                                                                                         GCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTG     <  SRR4302534.650023/94‑1 (MQ=60)

                                                                                          cagG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGG    >  SRR4302534.1254570/4‑94 (MQ=60)

                                                                                          cagG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGG    >  SRR4302534.3962614/4‑94 (MQ=60)

                                                                                          cagG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGG    <  SRR4302534.2076897/91‑1 (MQ=60)

                                                                                           agG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTTACCAATGTCATGACCGTGGA   <  SRR4302534.6443100/92‑1 (MQ=60)

                                                                                           agG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGGA   <  SRR4302534.1367112/92‑1 (MQ=60)

                                                                                           agG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGGA   >  SRR4302534.2149079/3‑94 (MQ=60)

                                                                                           G‑G‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGGAA  <  SRR4302534.765504/94‑1 (MQ=60)

                                                                                           G‑G‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGGAA  <  SRR4302534.4562095/94‑1 (MQ=60)

TTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑G‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGGAA  >  NC_000913/3575354‑3575538

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`