Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,623,600	T→C	T279A (ACG→GCG)	b3485 ←	putative transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,623,600	0	T	C	100.0%	916.2 / NA	264	T279A (ACG→GCG)	b3485	putative transporter
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (133/131); total (133/131)

Only 100 of 274 total aligned reads displayed.

CGCGCGGCGTGGAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGTCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAATCGGTACGC  >  NC_000913/3623510‑3623689

cgcgcgGCGTGGAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGccc                                                                                         >  2:625086/1‑93 (MQ=255)

   gcggcgTGGAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCa                                                                                      >  2:2954457/1‑93 (MQ=255)

    cggcgTGGAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGCACGCGCTATCGCCCCCAt                                                                                     >  2:3037427/1‑93 (MQ=255)

    cggcgTGGAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCAt                                                                                     >  2:2658116/1‑93 (MQ=255)

     ggcgTGGAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCGGTTGCGGCATTGAACGCGCTATCGCCCCCATa                                                                                    >  2:365475/1‑93 (MQ=255)

      gcgTGGAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATaa                                                                                   >  2:5229761/1‑93 (MQ=255)

        gTGGAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATaaaa                                                                                 >  2:2087586/1‑93 (MQ=255)

        gTGGAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATaaaa                                                                                 >  1:6166854/1‑93 (MQ=255)

          ggAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAAt                                                                               <  2:411443/93‑1 (MQ=255)

          ggAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAAt                                                                               >  2:151891/1‑93 (MQ=255)

          ggAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAAt                                                                               >  1:5028001/1‑93 (MQ=255)

          ggAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAAt                                                                               >  1:4724523/1‑93 (MQ=255)

            aaCCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGc                                                                             >  1:2238975/1‑93 (MQ=255)

            aaCCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGc                                                                             <  1:4945361/93‑1 (MQ=255)

             accaccGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGcc                                                                            <  2:3858963/93‑1 (MQ=255)

             accaccGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGcc                                                                            <  2:5079756/93‑1 (MQ=255)

             accaccGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGcc                                                                            >  1:1227131/1‑93 (MQ=255)

               caccGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGa                                                                          >  2:769425/1‑93 (MQ=255)

               caccGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGa                                                                          >  2:2243166/1‑93 (MQ=255)

               caccGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGa                                                                          >  1:4251204/1‑93 (MQ=255)

               caccGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGa                                                                          >  1:1472408/1‑93 (MQ=255)

                accGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCTGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGAt                                                                         >  2:3678866/1‑93 (MQ=255)

                accGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGAt                                                                         >  2:5993500/1‑93 (MQ=255)

                  cGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTg                                                                       >  1:2138055/1‑93 (MQ=255)

                   ggAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGa                                                                      >  2:2582983/1‑93 (MQ=255)

                   ggAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGa                                                                      >  2:1233651/1‑93 (MQ=255)

                   ggAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGa                                                                      >  1:1405897/1‑93 (MQ=255)

                     aaaGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACg                                                                    >  1:3790573/1‑93 (MQ=255)

                      aaGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACgt                                                                   <  2:5782952/93‑1 (MQ=255)

                      aaGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACgt                                                                   <  1:4592592/93‑1 (MQ=255)

                       aGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACgtg                                                                  >  2:3805301/1‑93 (MQ=255)

                       aGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACgtg                                                                  >  2:2875937/1‑93 (MQ=255)

                       aGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCCATTGACgtg                                                                  >  1:3371524/1‑93 (MQ=255)

                         cATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACgtggt                                                                <  1:291467/93‑1 (MQ=255)

                         cATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACgtggt                                                                <  2:5373915/93‑1 (MQ=255)

                         cATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACgtggt                                                                <  1:5579850/93‑1 (MQ=255)

                          aTTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACgtggtg                                                               <  2:492735/93‑1 (MQ=255)

                          aTTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACgtggtg                                                               <  2:4441172/93‑1 (MQ=255)

                          aTTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACgtggtg                                                               <  1:6035873/93‑1 (MQ=255)

                          aTTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACgtggtg                                                               <  2:4090265/93‑1 (MQ=255)

                           tttGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGtggtgg                                                              >  2:5014293/1‑93 (MQ=255)

                               cAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCaaa                                                          <  2:201820/93‑1 (MQ=255)

                                aGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAAc                                                         >  2:2151809/1‑93 (MQ=255)

                                   ggCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGa                                                      >  1:2051778/1‑93 (MQ=255)

                                    gcagcagcaCCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGAc                                                     >  1:2713528/1‑93 (MQ=255)

                                    gcagcagcaCCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGAc                                                     <  2:5534238/93‑1 (MQ=255)

                                    gcagcagcaCCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGAc                                                     <  2:1482517/93‑1 (MQ=255)

                                      agcagcaCCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTg                                                   <  1:44245/93‑1 (MQ=255)

                                      agcagcaCCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTg                                                   <  1:3822521/93‑1 (MQ=255)

                                      agcagcaCCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTg                                                   <  1:3625783/93‑1 (MQ=255)

                                       gcagcaCCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGa                                                  >  1:5957460/1‑93 (MQ=255)

                                       gcagcaCCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGa                                                  <  2:689204/93‑1 (MQ=255)

                                        cagcaCCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAg                                                 <  1:2873352/93‑1 (MQ=255)

                                          gcaCCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAgcg                                               >  1:6258274/1‑93 (MQ=255)

                                           caCCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATAGACGTGGTGGCAAACAGACTGAgcgc                                              <  1:4105713/93‑1 (MQ=255)

                                            aCCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGcc                                             <  2:2796831/93‑1 (MQ=255)

                                             ccAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCa                                            >  1:2473255/1‑93 (MQ=255)

                                               aGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACg                                          >  1:940800/1‑93 (MQ=255)

                                               aGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACg                                          >  2:3960430/1‑93 (MQ=255)

                                                 aaTCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGcc                                        <  1:4021449/93‑1 (MQ=255)

                                                 aaTCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGcc                                        >  1:5374804/1‑93 (MQ=255)

                                                 aaTCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGcc                                        >  1:4223404/1‑93 (MQ=255)

                                                   tCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCa                                      >  1:5754781/1‑93 (MQ=255)

                                                      ccAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCa                                   <  2:4702640/93‑1 (MQ=255)

                                                       cagcagCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCaa                                  >  2:1322819/1‑92 (MQ=255)

                                                         gcagcCCGAGTGGCGCCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATGTACGTGATGGCAAACAGACTGAGCGCCACGCCCGGCATaa                                <  1:1004414/93‑1 (MQ=255)

                                                         gcagcCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATaa                                >  1:3115772/1‑93 (MQ=255)

                                                           agcCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAAc                              <  1:391948/93‑1 (MQ=255)

                                                            gcCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACa                             <  2:4382423/93‑1 (MQ=255)

                                                             ccccAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAg                            <  1:5241527/93‑1 (MQ=255)

                                                              cccAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGc                           <  2:2773646/93‑1 (MQ=255)

                                                               ccAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCg                          >  2:3361733/1‑93 (MQ=255)

                                                                cAGTTGCGGCATTGAACGCGTTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCgg                         <  1:1017954/93‑1 (MQ=255)

                                                                cAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCgg                         <  2:6402416/93‑1 (MQ=255)

                                                                  gTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGa                       >  2:6040170/1‑93 (MQ=255)

                                                                   tcgcgcCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGAt                      <  1:3059727/91‑1 (MQ=255)

                                                                   gtGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGAt                      <  2:5267862/92‑1 (MQ=255)

                                                                     gCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCg                    >  1:3245787/1‑93 (MQ=255)

                                                                          aTTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCt               <  1:1818245/93‑1 (MQ=255)

                                                                          aTTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCt               >  2:2324640/1‑93 (MQ=255)

                                                                          aTTGAACGCGCTAGCGCCCCCATAAAAATACCGATTGACGTGGTGGCAAACAGACGGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCt               <  1:2653303/93‑1 (MQ=255)

                                                                           ttGAGCGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCtt              <  2:1675396/93‑1 (MQ=255)

                                                                            tGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTc             <  2:2051795/93‑1 (MQ=255)

                                                                             gAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCa            >  2:2999405/1‑93 (MQ=255)

                                                                             gAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCa            <  1:3664313/93‑1 (MQ=255)

                                                                             gAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCa            >  1:1637802/1‑93 (MQ=255)

                                                                             gAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCa            <  2:383345/93‑1 (MQ=255)

                                                                              aaCGCGCTATCGCCCCCATAAAAATGCCGATTGACGTTGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCaa           >  2:4544384/1‑93 (MQ=255)

                                                                              aaCGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCaa           >  1:4298097/1‑93 (MQ=255)

                                                                               aCGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAAt          <  2:4597463/93‑1 (MQ=255)

                                                                                cgcgCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAATc         <  2:4169035/93‑1 (MQ=255)

                                                                                cgcgCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAATc         >  2:1759401/1‑93 (MQ=255)

                                                                                   gcTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAATCGGt      <  1:6112461/93‑1 (MQ=255)

                                                                                   gcTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGACTTCAATCGGt      >  2:5702254/1‑93 (MQ=255)

                                                                                     tATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAATCGGTAc    <  1:690895/93‑1 (MQ=255)

                                                                                     tATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAATCGGTAc    >  2:6313122/1‑93 (MQ=255)

                                                                                     tATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAATCGGTAc    <  2:3590025/93‑1 (MQ=255)

                                                                                      aTCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAATCGGTAcc   >  1:4538455/1‑92 (MQ=255)

                                                                                       tCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAATCGGTACGc  <  1:6350059/93‑1 (MQ=255)

                                                                                       tCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGACACGCCCAGCATAAACAGCGGGATCGAGACTTCAATCGGTACGc  >  2:3937538/1‑93 (MQ=255)

CGCGCGGCGTGGAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGTCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAATCGGTACGC  >  NC_000913/3623510‑3623689

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTTCGCGCGGCGTGGAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGTCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAATCGGTACGCCCAG  >  NC_000913/3623507‑3623693

TTTCGCGCGGCGTGGAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGC                                                                                               <  SRR4302534.3567305/94‑1 (MQ=60)

   CGCGCGGCGTGGAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCC                                                                                            <  SRR4302534.4185117/94‑1 (MQ=60)

   CGCGCGGCGTGGAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCC                                                                                            >  SRR4302534.4335110/1‑94 (MQ=60)

     CGCGGCGTGGAACCACCGGAAAGCATATGCAGCGACAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCAATGAACGCGCTATCGCCCCCA                                                                                          <  SRR4302534.6472559/94‑1 (MQ=60)

      GCGGCGTGGAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCAT                                                                                         <  SRR4302534.6226244/94‑1 (MQ=60)

       CGGCGTGGAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATA                                                                                        <  SRR4302534.4406960/94‑1 (MQ=60)

         GCGTGGAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAA                                                                                      >  SRR4302534.2983152/1‑94 (MQ=60)

          CGTGGAACCGCCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGACCGCGCTATCGCCCCCATAAAA                                                                                     <  SRR4302534.6359111/94‑1 (MQ=60)

          CGTGGAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAA                                                                                     >  SRR4302534.5967780/1‑94 (MQ=60)

          CGTGGAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAA                                                                                     >  SRR4302534.6334586/1‑94 (MQ=60)

            TGGAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAAT                                                                                   >  SRR4302534.4852832/1‑94 (MQ=60)

            TGGAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAAT                                                                                   >  SRR4302534.5163803/1‑94 (MQ=60)

              GAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGC                                                                                 >  SRR4302534.3923292/1‑94 (MQ=60)

              GAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGC                                                                                 >  SRR4302534.2298307/1‑94 (MQ=60)

              GAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACCCGCTATCGCCCCCCTAAAAATGC                                                                                 >  SRR4302534.260239/1‑94 (MQ=60)

               AACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCC                                                                                >  SRR4302534.1259432/1‑94 (MQ=60)

               AACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCC                                                                                <  SRR4302534.5841032/94‑1 (MQ=60)

               AACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCC                                                                                <  SRR4302534.3808697/94‑1 (MQ=60)

               AACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCC                                                                                <  SRR4302534.5079345/94‑1 (MQ=60)

                ACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCG                                                                               >  SRR4302534.2708331/1‑94 (MQ=60)

                 CCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGA                                                                              >  SRR4302534.4365892/1‑94 (MQ=60)

                 CCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGA                                                                              >  SRR4302534.1511141/1‑94 (MQ=60)

                 CCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGA                                                                              <  SRR4302534.3779591/94‑1 (MQ=60)

                  CACCGGAAAGCATTTGCAGCGGCAGCAGCAGCAGAATCACCAGCAGCCCCAGCTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGAT                                                                             >  SRR4302534.1698001/1‑94 (MQ=60)

                  CACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGAT                                                                             <  SRR4302534.4535679/94‑1 (MQ=60)

                   ACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGTCATTGAACGCGCTATCGCCCCCTTAAAAATGCCGATT                                                                            <  SRR4302534.2337496/94‑1 (MQ=60)

                   ACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATT                                                                            <  SRR4302534.3185116/94‑1 (MQ=60)

                   ACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATT                                                                            <  SRR4302534.2167382/94‑1 (MQ=60)

                   ACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATT                                                                            >  SRR4302534.3659276/1‑94 (MQ=60)

                    CCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTG                                                                           >  SRR4302534.2194426/1‑94 (MQ=60)

                     CGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGA                                                                          >  SRR4302534.1442878/1‑94 (MQ=60)

                       GAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACG                                                                        >  SRR4302534.3892334/1‑94 (MQ=60)

                         AAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTG                                                                      <  SRR4302534.4717231/94‑1 (MQ=60)

                         AAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTG                                                                      >  SRR4302534.3747129/1‑94 (MQ=60)

                         AAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCCATTGACGTG                                                                      >  SRR4302534.3461859/1‑94 (MQ=60)

                          AGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGG                                                                     <  SRR4302534.4329937/94‑1 (MQ=60)

                            CATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTG                                                                   <  SRR4302534.298998/94‑1 (MQ=60)

                            CATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTG                                                                   <  SRR4302534.5730595/94‑1 (MQ=60)

                            CATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTG                                                                   <  SRR4302534.4958196/94‑1 (MQ=60)

                             ATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGG                                                                  <  SRR4302534.6199914/94‑1 (MQ=60)

                             ATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGG                                                                  >  SRR4302534.4533257/1‑94 (MQ=60)

                                   AGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACA                                                            <  SRR4302534.3387501/94‑1 (MQ=60)

                                   AGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACA                                                            >  SRR4302534.4621511/1‑94 (MQ=60)

                                    GCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAG                                                           <  SRR4302534.399354/94‑1 (MQ=60)

                                    GCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAG                                                           <  SRR4302534.3217984/94‑1 (MQ=60)

                                    GCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAG                                                           <  SRR4302534.2779869/94‑1 (MQ=60)

                                     CGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGA                                                          >  SRR4302534.2105391/1‑94 (MQ=60)

                                      GGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGAC                                                         <  SRR4302534.958670/94‑1 (MQ=60)

                                      GGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGAC                                                         >  SRR4302534.2785168/1‑94 (MQ=60)

                                       GCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACT                                                        <  SRR4302534.2276955/94‑1 (MQ=60)

                                         AGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGA                                                      <  SRR4302534.45424/94‑1 (MQ=60)

                                         AGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGA                                                      <  SRR4302534.3925207/94‑1 (MQ=60)

                                         AGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGA                                                      >  SRR4302534.6119219/1‑94 (MQ=60)

                                         AGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGA                                                      <  SRR4302534.3723250/94‑1 (MQ=60)

                                          GCAGCACCAGAATCACCAGCACCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAG                                                     <  SRR4302534.6300144/94‑1 (MQ=60)

                                           CAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGC                                                    <  SRR4302534.2948804/94‑1 (MQ=60)

                                           CAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGC                                                    <  SRR4302534.3384576/94‑1 (MQ=60)

                                           CAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGC                                                    <  SRR4302534.6126839/94‑1 (MQ=60)

                                            AGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCG                                                   >  SRR4302534.6427855/1‑94 (MQ=60)

                                            AGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCG                                                   >  SRR4302534.3296045/1‑94 (MQ=60)

                                             GCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGC                                                  >  SRR4302534.5084748/1‑94 (MQ=60)

                                              CACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCC                                                 >  SRR4302534.4675405/1‑94 (MQ=60)

                                              CACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCC                                                 >  SRR4302534.5241975/1‑94 (MQ=60)

                                              CACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATAGACGTGGTGGCAAACAGACTGAGCGCC                                                 <  SRR4302534.4216140/94‑1 (MQ=60)

                                               ACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCA                                                <  SRR4302534.2908955/94‑1 (MQ=60)

                                               ACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCA                                                >  SRR4302534.2538981/1‑94 (MQ=60)

                                                CGAGAAGCACCAGCAGCCCCAGTGGCGGCATTGAACGCGCTAGCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCAC                                               <  SRR4302534.3612851/94‑1 (MQ=60)

                                                 CAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACG                                              >  SRR4302534.964724/1‑94 (MQ=60)

                                                 CAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACG                                              <  SRR4302534.5602318/94‑1 (MQ=60)

                                                   GAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCC                                            >  SRR4302534.5519636/1‑94 (MQ=60)

                                                   GAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCC                                            >  SRR4302534.4337243/1‑94 (MQ=60)

                                                    AATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCC                                           >  SRR4302534.5801628/1‑94 (MQ=60)

                                                    AATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCC                                           <  SRR4302534.4129261/94‑1 (MQ=60)

                                                     ATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCA                                          <  SRR4302534.6211749/94‑1 (MQ=60)

                                                     ATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCA                                          >  SRR4302534.5910867/1‑94 (MQ=60)

                                                      TCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAG                                         <  SRR4302534.4784046/94‑1 (MQ=60)

                                                      TCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAG                                         <  SRR4302534.626308/94‑1 (MQ=60)

                                                          CAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATA                                     >  SRR4302534.4409282/1‑94 (MQ=60)

                                                          CAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGCGGCAAACAGACTGAGCGCCACGCCCAGCATA                                     >  SRR4302534.3022190/1‑94 (MQ=60)

                                                           AGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAA                                    >  SRR4302534.4816804/1‑94 (MQ=60)

                                                           AGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAA                                    <  SRR4302534.5106742/94‑1 (MQ=60)

                                                           AGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAA                                    >  SRR4302534.3197701/1‑94 (MQ=60)

                                                           AGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAA                                    <  SRR4302534.4349875/94‑1 (MQ=60)

                                                            GCAGCCCGAGTGGCGCCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATGTACGTGATGGCAAACAGACTGAGCGCCACGCCCGGCATAAA                                   <  SRR4302534.1030181/94‑1 (MQ=60)

                                                            GCAGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAA                                   <  SRR4302534.1113701/94‑1 (MQ=60)

                                                              AGCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACA                                 <  SRR4302534.401973/94‑1 (MQ=60)

                                                               GCCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAG                                >  SRR4302534.1519887/1‑94 (MQ=60)

                                                                CCCCAGTTGCGGCATTGAACGCGCTCTAGCCCCCATAAAAATGCCGATTGACGTGCTGGCACAAAGACTGAGCGCCACGCCCAGCATAAACAGC                               >  SRR4302534.418204/1‑94 (MQ=60)

                                                                CCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCGACGCCCAGCATAAACAGC                               >  SRR4302534.1337564/1‑94 (MQ=60)

                                                                CCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGC                               >  SRR4302534.834332/1‑94 (MQ=60)

                                                                CCCCAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGC                               <  SRR4302534.5383066/94‑1 (MQ=60)

                                                                   CAGTTGCGGCATTGAACGCGTTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGG                            <  SRR4302534.1044158/94‑1 (MQ=60)

                                                                   CAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGG                            <  SRR4302534.6616214/94‑1 (MQ=60)

                                                                   CAGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGG                            >  SRR4302534.1039274/1‑94 (MQ=60)

                                                                    AGTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGA                           >  SRR4302534.4607173/1‑94 (MQ=60)

                                                                     GTTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGAT                          <  SRR4302534.3907449/94‑1 (MQ=60)

                                                                      TTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATC                         <  SRR4302534.4012931/94‑1 (MQ=60)

                                                                      TTGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATC                         <  SRR4302534.3133914/94‑1 (MQ=60)

                                                                      TCGCGCCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATC                         <  SRR4302534.3140024/94‑1 (MQ=60)

                                                                       TGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCG                        >  SRR4302534.1980312/1‑94 (MQ=60)

                                                                       TGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCG                        >  SRR4302534.2975661/1‑94 (MQ=60)

                                                                       TGCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCG                        >  SRR4302534.3332200/1‑94 (MQ=60)

                                                                        GCGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGA                       <  SRR4302534.5559757/94‑1 (MQ=60)

                                                                         CGGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAG                      <  SRR4302534.5476310/94‑1 (MQ=60)

                                                                          GGCATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGC                     >  SRR4302534.2276382/1‑94 (MQ=60)

                                                                            CATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACGGAGCGCCACGCCCAGCATAAACAGCCGGACCGAGCCT                   >  SRR4302534.2919034/1‑94 (MQ=60)

                                                                             ATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAACCAGCGGGATCGAGCCTC                  >  SRR4302534.1833981/1‑94 (MQ=60)

                                                                             ATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTT                  <  SRR4302534.1523115/94‑1 (MQ=60)

                                                                             ATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTT                  <  SRR4302534.6184532/94‑1 (MQ=60)

                                                                             ATTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTT                  <  SRR4302534.1865483/94‑1 (MQ=60)

                                                                             ATTGAACGCGCTAGCGCCCCCATAAAAATACCGATTGACGTGGTGGCAAACAGACGGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTT                  <  SRR4302534.2723472/94‑1 (MQ=60)

                                                                              TTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTC                 <  SRR4302534.2423309/94‑1 (MQ=60)

                                                                              TTGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTC                 <  SRR4302534.6587032/94‑1 (MQ=60)

                                                                               TGAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCA                >  SRR4302534.1680516/1‑94 (MQ=60)

                                                                                GAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAA               <  SRR4302534.3762788/94‑1 (MQ=60)

                                                                                GAACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAA               >  SRR4302534.4414561/1‑94 (MQ=60)

                                                                                  ACGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAATC             >  SRR4302534.1471118/1‑94 (MQ=60)

                                                                                   CGCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAATCG            <  SRR4302534.6507219/94‑1 (MQ=60)

                                                                                    GCGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAATCGG           >  SRR4302534.1180383/1‑94 (MQ=60)

                                                                                     CGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAATCGGT          <  SRR4302534.2005763/94‑1 (MQ=60)

                                                                                     CGCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAATCGGT          >  SRR4302534.5442203/1‑94 (MQ=60)

                                                                                      GCTATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAATCGGTA         <  SRR4302534.6278739/94‑1 (MQ=60)

                                                                                        TATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAATCGGTACG       <  SRR4302534.4860740/94‑1 (MQ=60)

                                                                                        TATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAATCGGTACG       >  SRR4302534.1353903/1‑94 (MQ=60)

                                                                                        TATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAATCGGTACG       <  SRR4302534.707800/94‑1 (MQ=60)

                                                                                        TATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAATCGGTACC       >  SRR4302534.4661462/1‑94 (MQ=60)

                                                                                         ATCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAATCGGTACGC      >  SRR4302534.41215/1‑94 (MQ=60)

                                                                                          TCGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAATCGGTACGCC     <  SRR4302534.6521546/94‑1 (MQ=60)

                                                                                           CGCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAATCGGTACGCCC    <  SRR4302534.1555884/94‑1 (MQ=60)

                                                                                            GCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAATCGGTACGCCCA   >  SRR4302534.1317178/1‑94 (MQ=60)

                                                                                            GCCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAATCGGTACGCCCA   >  SRR4302534.5039652/1‑94 (MQ=60)

                                                                                             CCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAATCGGTACGCCCAG  <  SRR4302534.1218810/94‑1 (MQ=60)

TTTCGCGCGGCGTGGAACCACCGGAAAGCATTTGCAGCGGCAGCAGCACCAGAATCACCAGCAGCCCCAGTTGCGGCATTGAACGCGCTATCGTCCCCATAAAAATGCCGATTGACGTGGTGGCAAACAGACTGAGCGCCACGCCCAGCATAAACAGCGGGATCGAGCCTTCAATCGGTACGCCCAG  >  NC_000913/3623507‑3623693

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`