Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 884 257.2 12958910 96.9% 12557183 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,692,572 C→T T98T (ACG→ACA)  b3533 ← putative cellulose synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,692,5720CT99.6% 856.1 / NA 227T98T (ACG→ACA) b3533putative cellulose synthase
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base T (104/122);  total (105/122)
Fisher's exact test for biased strand distribution p-value = 4.63e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 232 total aligned reads displayed.

GCTAACGCGCTCAGGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGCGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGTTGAT  >  NC_000913/3692482‑3692661
                                                                                          |                                                                                         
 cTAACGCGCTCAGGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGtt                                                                                        >  2:181022/1‑93 (MQ=255)
   aaCGCGCTCAGGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTc                                                                                      <  1:2083374/93‑1 (MQ=255)
   aaCGCGCTCAGGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTc                                                                                      >  1:65123/1‑93 (MQ=255)
    aCGCGCTCAGGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCt                                                                                     >  2:6354533/1‑93 (MQ=255)
      gcgcTCAGGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCttt                                                                                   <  2:878636/93‑1 (MQ=255)
      gcgcTCAGGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCttt                                                                                   <  2:2292312/93‑1 (MQ=255)
      gcgcTCAGGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCttt                                                                                   <  2:68208/93‑1 (MQ=255)
             ggCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGAt                                                                            >  2:3798264/1‑93 (MQ=255)
             ggCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGAt                                                                            >  1:3204104/1‑93 (MQ=255)
              gCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATg                                                                           >  1:1011653/1‑93 (MQ=255)
                aGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGCTGcc                                                                         >  2:2227241/1‑92 (MQ=255)
                 gCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCAc                                                                        >  2:2851709/1‑93 (MQ=255)
                 gCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCAc                                                                        <  1:3528656/93‑1 (MQ=255)
                  cTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCAcc                                                                       <  1:4638072/93‑1 (MQ=255)
                  cTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCAcc                                                                       <  1:3103181/93‑1 (MQ=255)
                   tCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCg                                                                      <  1:3600223/93‑1 (MQ=255)
                     gTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGAt                                                                    >  2:4006860/1‑93 (MQ=255)
                      ttCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATc                                                                   <  1:5850820/93‑1 (MQ=255)
                       tCATCCATTTATGGTAACGTCCACGAATATTTAGCAGTCCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCa                                                                  <  1:3307925/93‑1 (MQ=255)
                        cATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCaa                                                                 >  1:3886977/1‑93 (MQ=255)
                         aTCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAAt                                                                >  2:2064089/1‑93 (MQ=255)
                         aTCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAAt                                                                <  1:5192947/93‑1 (MQ=255)
                            cATTGATGGTACCGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAAc                                                             <  2:1128420/93‑1 (MQ=255)
                               tGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAg                                                          >  2:3579328/1‑93 (MQ=255)
                                 aTGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCa                                                        <  2:1502119/93‑1 (MQ=255)
                                  tGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCAt                                                       >  2:4126535/1‑93 (MQ=255)
                                   ggTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATg                                                      >  1:4365490/1‑93 (MQ=255)
                                   ggTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATg                                                      >  1:5103540/1‑93 (MQ=255)
                                      aaCGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGttt                                                   >  1:2739135/1‑93 (MQ=255)
                                      aaCGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGttt                                                   <  2:3739690/93‑1 (MQ=255)
                                      aaCGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGttt                                                   >  2:5459189/1‑93 (MQ=255)
                                      aaCGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGttt                                                   >  2:3511666/1‑93 (MQ=255)
                                       aCGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTg                                                  >  1:4352549/1‑93 (MQ=255)
                                       aCGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTg                                                  <  1:145887/93‑1 (MQ=255)
                                       aCGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTg                                                  <  1:3818241/93‑1 (MQ=255)
                                          tCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAAt                                               <  1:1816453/93‑1 (MQ=255)
                                           ccACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATg                                              >  1:4915635/1‑93 (MQ=255)
                                           ccACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATg                                              >  1:2158937/1‑93 (MQ=255)
                                            cACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATga                                             <  1:2438546/93‑1 (MQ=255)
                                            cACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATga                                             <  2:2163042/93‑1 (MQ=255)
                                            cACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATga                                             >  1:481149/1‑93 (MQ=255)
                                             aCGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATgag                                            >  2:4983452/1‑93 (MQ=255)
                                             aCGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATgag                                            <  1:88575/93‑1 (MQ=255)
                                             aCGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATgag                                            <  2:4808187/93‑1 (MQ=255)
                                              cGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATgaga                                           >  1:5510485/1‑93 (MQ=255)
                                              cGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATgaga                                           <  2:626494/93‑1 (MQ=255)
                                              cGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATgaga                                           <  1:187954/93‑1 (MQ=255)
                                              cGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATgaga                                           <  1:4442145/93‑1 (MQ=255)
                                                 atatTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATaa                                        <  2:5033117/93‑1 (MQ=255)
                                                 atatTGTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATaa                                        <  1:1370198/93‑1 (MQ=255)
                                                   atTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACg                                      >  2:1009377/1‑93 (MQ=255)
                                                   atTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACg                                      >  2:773818/1‑93 (MQ=255)
                                                   atTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACg                                      <  1:5391201/93‑1 (MQ=255)
                                                      ttGCAGACCTGAAAATGCCCGCCTGCGCGGTGTCGGTGTTTCTTTGCGCGATGCACCGATCAATAGCCAGCATGTTTGAATGAGATAACGGAc                                   <  2:6149288/93‑1 (MQ=255)
                                                          aGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCggg                               >  1:3683464/1‑93 (MQ=255)
                                                          aGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCggg                               >  1:4001836/1‑93 (MQ=255)
                                                           gACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGt                              <  1:1551731/93‑1 (MQ=255)
                                                           gACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGt                              >  2:1536222/1‑93 (MQ=255)
                                                           gACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGt                              >  1:6328707/1‑93 (MQ=255)
                                                           gACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGt                              >  2:455106/1‑93 (MQ=255)
                                                           gACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGt                              >  2:4190134/1‑93 (MQ=255)
                                                            aCCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTc                             <  2:4676727/93‑1 (MQ=255)
                                                            aCCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTc                             <  1:5917594/93‑1 (MQ=255)
                                                            aCCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTc                             >  2:3141617/1‑93 (MQ=255)
                                                                gAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAgc                         >  2:4326357/1‑93 (MQ=255)
                                                                gAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAgc                         <  2:2747391/93‑1 (MQ=255)
                                                                 aaaaTGCCAGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAgcg                        >  1:6304812/1‑93 (MQ=255)
                                                                   aaTGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAgcgga                      >  2:6458791/1‑93 (MQ=255)
                                                                    aTGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAgcggac                     <  2:500265/93‑1 (MQ=255)
                                                                    aTGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAgcggac                     <  2:1228065/93‑1 (MQ=255)
                                                                      gCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAgcggacgc                   <  2:5215677/93‑1 (MQ=255)
                                                                       cccGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAgcggacgcg                  >  2:19769/1‑93 (MQ=255)
                                                                        ccGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAgcggacgcgg                 >  1:5434157/1‑93 (MQ=255)
                                                                         cGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAgcggacgcgga                <  1:2580966/93‑1 (MQ=255)
                                                                         cGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAgcggacgcgga                >  1:4869147/1‑93 (MQ=255)
                                                                          gCCTGCGGGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAgcggacgcggac               >  1:6131269/1‑93 (MQ=255)
                                                                          gCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAgcggacgcggac               >  2:5576502/1‑93 (MQ=255)
                                                                          gCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAgcggacgcggac               <  2:3004276/93‑1 (MQ=255)
                                                                           ccTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGcggacgcggacg              >  2:1860063/1‑93 (MQ=255)
                                                                           ccTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGcggacgcggacg              <  2:5416855/93‑1 (MQ=255)
                                                                           ccTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGcggacgcggacg              >  1:1997180/1‑93 (MQ=255)
                                                                             tGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGgacgcggacgcg            >  1:2645917/1‑93 (MQ=255)
                                                                             tGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGgacgcggacgcg            >  1:1244879/1‑93 (MQ=255)
                                                                              gcgcGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGa           <  1:4250299/93‑1 (MQ=255)
                                                                               cgcgGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAg          <  2:3452809/93‑1 (MQ=255)
                                                                               cgcgGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAg          <  2:5684943/93‑1 (MQ=255)
                                                                               cgcgGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAg          <  1:2824279/93‑1 (MQ=255)
                                                                                gcgGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAgg         <  2:584400/93‑1 (MQ=255)
                                                                                 cgGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGc        <  2:3695201/93‑1 (MQ=255)
                                                                                 cgGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGc        <  1:1392279/93‑1 (MQ=255)
                                                                                 cgGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGc        <  2:65123/93‑1 (MQ=255)
                                                                                  ggTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCg       >  1:6436565/1‑93 (MQ=255)
                                                                                   gTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGt      <  2:5164802/93‑1 (MQ=255)
                                                                                   gTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGt      >  1:596049/1‑93 (MQ=255)
                                                                                   gTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGt      <  2:2523689/93‑1 (MQ=255)
                                                                                    tttCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGtt     <  1:3473979/93‑1 (MQ=255)
                                                                                    tttCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGtt     <  1:1719912/93‑1 (MQ=255)
                                                                                    tttCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGtt     >  2:1399378/1‑93 (MQ=255)
                                                                                     ttCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGTTg    <  2:3252678/93‑1 (MQ=255)
                                                                                       cGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGTTGat  <  1:2219945/93‑1 (MQ=255)
                                                                                          |                                                                                         
GCTAACGCGCTCAGGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGCGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGTTGAT  >  NC_000913/3692482‑3692661

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGGCTAACGCGCTCAGGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGCGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGTTGATATGC  >  NC_000913/3692480‑3692665
                                                                                            |                                                                                             
TGGCTAACGCGCTCAGGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTG                                                                                              >  SRR4302534.3446902/1‑94 (MQ=60)
TGGCTAACGCGCTCAGGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTG                                                                                              <  SRR4302534.4809053/94‑1 (MQ=60)
TGGCTAACGCGCTCAGGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTG                                                                                              <  SRR4302534.617380/94‑1 (MQ=60)
 GGCTAACGCGCTCAGGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGT                                                                                             >  SRR4302534.2350949/1‑94 (MQ=60)
 GGCTAACGCGCTCAGGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGT                                                                                             <  SRR4302534.1371396/94‑1 (MQ=60)
 GGCTAACGCGCTCAGGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGT                                                                                             <  SRR4302534.2085489/94‑1 (MQ=60)
   CTAACGCGCTCAGGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTT                                                                                           <  SRR4302534.1816916/94‑1 (MQ=60)
    TAACGCGCTCAGGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTC                                                                                          >  SRR4302534.956444/1‑94 (MQ=60)
    TAACGCGCTCAGGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTC                                                                                          >  SRR4302534.6050678/1‑94 (MQ=60)
    TAACGCGCTCAGGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTC                                                                                          >  SRR4302534.66900/1‑94 (MQ=60)
     AACGCGCTCAGGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCT                                                                                         <  SRR4302534.4014235/94‑1 (MQ=60)
     AACGCGCTCAGGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCT                                                                                         <  SRR4302534.2137952/94‑1 (MQ=60)
      ACGCGCTCAGGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTT                                                                                        >  SRR4302534.5475392/1‑94 (MQ=60)
       CGCGCTCAGGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTT                                                                                       <  SRR4302534.5488277/94‑1 (MQ=60)
       CGCGCTCAGGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTT                                                                                       <  SRR4302534.3240151/94‑1 (MQ=60)
          GCTCAGGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCG                                                                                    >  SRR4302534.4958254/1‑94 (MQ=60)
              AGGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGAT                                                                                >  SRR4302534.3289067/1‑94 (MQ=60)
               GGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATG                                                                               >  SRR4302534.3152152/1‑94 (MQ=60)
               GGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATG                                                                               >  SRR4302534.1037674/1‑94 (MQ=60)
               GGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATG                                                                               <  SRR4302534.140800/94‑1 (MQ=60)
                GCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGC                                                                              >  SRR4302534.4257886/1‑94 (MQ=60)
                 CAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCA                                                                             >  SRR4302534.1674529/1‑94 (MQ=60)
                 CAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCA                                                                             >  SRR4302534.521765/1‑94 (MQ=60)
                 CAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCA                                                                             >  SRR4302534.5952537/1‑94 (MQ=60)
                  AGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCAC                                                                            >  SRR4302534.3983876/1‑94 (MQ=60)
                   GCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACC                                                                           <  SRR4302534.3623568/94‑1 (MQ=60)
                    CTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCG                                                                          <  SRR4302534.4763920/94‑1 (MQ=60)
                    CTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCG                                                                          <  SRR4302534.3184811/94‑1 (MQ=60)
                     TCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCTATGCACCGA                                                                         <  SRR4302534.6447754/94‑1 (MQ=60)
                     TCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGA                                                                         <  SRR4302534.3697048/94‑1 (MQ=60)
                      CGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGAT                                                                        >  SRR4302534.366068/1‑94 (MQ=60)
                       GTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATC                                                                       >  SRR4302534.6116973/1‑94 (MQ=60)
                       GTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATC                                                                       <  SRR4302534.2804767/94‑1 (MQ=60)
                        TTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCA                                                                      <  SRR4302534.6009690/94‑1 (MQ=60)
                         TCATCCATTTATGGTAACGTCCACGAATATTTAGCAGTCCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAA                                                                     <  SRR4302534.3396261/94‑1 (MQ=60)
                         TCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAA                                                                     >  SRR4302534.4482835/1‑94 (MQ=60)
                         TCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAA                                                                     >  SRR4302534.3991320/1‑94 (MQ=60)
                          CATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAAT                                                                    >  SRR4302534.3543964/1‑94 (MQ=60)
                           ATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATA                                                                   <  SRR4302534.5332955/94‑1 (MQ=60)
                               ATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCA                                                               <  SRR4302534.700736/94‑1 (MQ=60)
                                  GATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCA                                                            <  SRR4302534.3580911/94‑1 (MQ=60)
                                  GATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCA                                                            <  SRR4302534.4669114/94‑1 (MQ=60)
                                  GATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCA                                                            <  SRR4302534.5687616/94‑1 (MQ=60)
                                   ATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCAT                                                           >  SRR4302534.4518103/1‑94 (MQ=60)
                                    TGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATG                                                          >  SRR4302534.5241285/1‑94 (MQ=60)
                                    TGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATG                                                          >  SRR4302534.3866478/1‑94 (MQ=60)
                                    TGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATG                                                          >  SRR4302534.4483185/1‑94 (MQ=60)
                                       TAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTT                                                       >  SRR4302534.1873595/1‑94 (MQ=60)
                                       TAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTT                                                       >  SRR4302534.2811316/1‑94 (MQ=60)
                                        AACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTG                                                      >  SRR4302534.4470049/1‑94 (MQ=60)
                                        AACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTG                                                      >  SRR4302534.5025766/1‑94 (MQ=60)
                                         ACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGA                                                     <  SRR4302534.149683/94‑1 (MQ=60)
                                         ACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGA                                                     <  SRR4302534.3920820/94‑1 (MQ=60)
                                           GTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAAT                                                   >  SRR4302534.938578/1‑94 (MQ=60)
                                            TCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATG                                                  >  SRR4302534.2215936/1‑94 (MQ=60)
                                            TCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATG                                                  <  SRR4302534.1863653/94‑1 (MQ=60)
                                            TCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATG                                                  >  SRR4302534.5048867/1‑94 (MQ=60)
                                             CCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGA                                                 >  SRR4302534.493223/1‑94 (MQ=60)
                                              CACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAG                                                <  SRR4302534.2503350/94‑1 (MQ=60)
                                              CACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAG                                                <  SRR4302534.611738/94‑1 (MQ=60)
                                               ACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGA                                               <  SRR4302534.1333281/94‑1 (MQ=60)
                                               ACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGA                                               >  SRR4302534.5659135/1‑94 (MQ=60)
                                               ACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGA                                               <  SRR4302534.90937/94‑1 (MQ=60)
                                                CGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGAT                                              <  SRR4302534.1270718/94‑1 (MQ=60)
                                                CGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGAT                                              <  SRR4302534.192897/94‑1 (MQ=60)
                                                CGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGAT                                              <  SRR4302534.4562146/94‑1 (MQ=60)
                                                CGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGAT                                              <  SRR4302534.5585293/94‑1 (MQ=60)
                                                 GAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATA                                             <  SRR4302534.2664983/94‑1 (MQ=60)
                                                 CAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATA                                             <  SRR4302534.2160832/94‑1 (MQ=60)
                                                  AATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAA                                            >  SRR4302534.5042727/1‑94 (MQ=60)
                                                   ATATTTTGCAGACCTGAAAATGTCCGCCTGCGCGGTTTCGGCGTTTCTTTGCTCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAAC                                           >  SRR4302534.6640597/1‑94 (MQ=60)
                                                   ATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGTTTTCGGGGTTTCTTTGCGCGATGTACCGATCAATAACCAGCATGTTTGAATGAGATAAC                                           >  SRR4302534.1489372/1‑94 (MQ=60)
                                                   ATATTGTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAAC                                           <  SRR4302534.1406304/94‑1 (MQ=60)
                                                     ATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGG                                         <  SRR4302534.5536379/94‑1 (MQ=60)
                                                     ATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGG                                         <  SRR4302534.357751/94‑1 (MQ=60)
                                                     ATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGG                                         <  SRR4302534.6487562/94‑1 (MQ=60)
                                                          GCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGG                                    >  SRR4302534.1503583/1‑94 (MQ=60)
                                                           CAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGG                                   >  SRR4302534.3782499/1‑94 (MQ=60)
                                                           CAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGG                                   >  SRR4302534.4108979/1‑94 (MQ=60)
                                                           CAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGG                                   >  SRR4302534.3766824/1‑94 (MQ=60)
                                                           CAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGG                                   >  SRR4302534.3325317/1‑94 (MQ=60)
                                                            AGACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGT                                  >  SRR4302534.6499688/1‑94 (MQ=60)
                                                             GACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTC                                 <  SRR4302534.1592382/94‑1 (MQ=60)
                                                             GACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTC                                 <  SRR4302534.2865552/94‑1 (MQ=60)
                                                              ACCTGAAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCC                                <  SRR4302534.6078273/94‑1 (MQ=60)
                                                                  GAAAATGCCAGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCG                            >  SRR4302534.6475305/1‑94 (MQ=60)
                                                                   AAAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGG                           >  SRR4302534.6268658/1‑94 (MQ=60)
                                                                    AAATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGA                          <  SRR4302534.2747461/94‑1 (MQ=60)
                                                                     AATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGAC                         >  SRR4302534.4456493/1‑94 (MQ=60)
                                                                     AATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGAC                         >  SRR4302534.5277485/1‑94 (MQ=60)
                                                                     AATGCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGCTTGAATGAGCTAACGGACCGGGTCCAGCGGcg                         >  SRR4302534.2035557/1‑92 (MQ=60)
                                                                        GCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCG                      >  SRR4302534.5561839/1‑94 (MQ=60)
                                                                        GCCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCG                      <  SRR4302534.1484507/94‑1 (MQ=60)
                                                                         CCCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGG                     >  SRR4302534.5580478/1‑94 (MQ=60)
                                                                          CCGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGA                    >  SRR4302534.5001223/1‑94 (MQ=60)
                                                                           CGCCTGCGGGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGAC                   >  SRR4302534.6298051/1‑94 (MQ=60)
                                                                           CGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGAC                   <  SRR4302534.2649311/94‑1 (MQ=60)
                                                                           CGCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGAC                   <  SRR4302534.4718455/94‑1 (MQ=60)
                                                                            GCCTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACG                  >  SRR4302534.2049483/1‑94 (MQ=60)
                                                                            GCCTGCGCGGTTTCGGTCTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTCAATGAGATAACGGACCGGGTCCAGCGGACGCGGACG                  <  SRR4302534.3215697/94‑1 (MQ=60)
                                                                              CTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCG                >  SRR4302534.2715883/1‑94 (MQ=60)
                                                                              CTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCG                >  SRR4302534.1277685/1‑94 (MQ=60)
                                                                              CTGCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCG                <  SRR4302534.6582183/94‑1 (MQ=60)
                                                                                GCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAG              <  SRR4302534.4364959/94‑1 (MQ=60)
                                                                                GCGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAG              >  SRR4302534.3794094/1‑94 (MQ=60)
                                                                                 CGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGG             <  SRR4302534.2898523/94‑1 (MQ=60)
                                                                                 CGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGG             <  SRR4302534.2135498/94‑1 (MQ=60)
                                                                                 CGCGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGG             <  SRR4302534.1487548/94‑1 (MQ=60)
                                                                                   CGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCG           >  SRR4302534.6610053/1‑94 (MQ=60)
                                                                                   CGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCG           >  SRR4302534.2098859/1‑94 (MQ=60)
                                                                                   CGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCG           >  SRR4302534.1833647/1‑94 (MQ=60)
                                                                                   CGGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCG           <  SRR4302534.1428925/94‑1 (MQ=60)
                                                                                    GGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGT          >  SRR4302534.4427032/1‑94 (MQ=60)
                                                                                    GGTTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGT          >  SRR4302534.610590/1‑94 (MQ=60)
                                                                                      TTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTTAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGTTG        <  SRR4302534.6608689/94‑1 (MQ=60)
                                                                                      TTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGTTG        <  SRR4302534.2320509/94‑1 (MQ=60)
                                                                                      TTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGTTG        <  SRR4302534.1764586/94‑1 (MQ=60)
                                                                                      TTTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGTTG        <  SRR4302534.3567363/94‑1 (MQ=60)
                                                                                       TTCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGTTGA       <  SRR4302534.4883220/94‑1 (MQ=60)
                                                                                        TCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGTTGAT      <  SRR4302534.2547000/94‑1 (MQ=60)
                                                                                        TCGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGTTGAT      <  SRR4302534.2220290/94‑1 (MQ=60)
                                                                                         CGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGTTGATA     >  SRR4302534.384763/1‑94 (MQ=60)
                                                                                         CGGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGTTGATA     <  SRR4302534.2278748/94‑1 (MQ=60)
                                                                                          GGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGTTGATAT    >  SRR4302534.1146223/1‑94 (MQ=60)
                                                                                          GGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGTTGATAT    <  SRR4302534.2676242/94‑1 (MQ=60)
                                                                                          GGTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGTTGATAT    >  SRR4302534.2852932/1‑94 (MQ=60)
                                                                                           GTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGTTGATATG   >  SRR4302534.1526748/1‑94 (MQ=60)
                                                                                           GTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGTTGATATG   <  SRR4302534.6065876/94‑1 (MQ=60)
                                                                                           GTGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGTTGATATG   <  SRR4302534.2153750/94‑1 (MQ=60)
                                                                                            TGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGTTGATATGG  >  SRR4302534.1261051/1‑94 (MQ=60)
                                                                                            TGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGTTGATATGC  <  SRR4302534.5843813/94‑1 (MQ=60)
                                                                                            TGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGTTGATATGC  >  SRR4302534.2715900/1‑94 (MQ=60)
                                                                                            TGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGTTGATATGC  >  SRR4302534.4464026/1‑94 (MQ=60)
                                                                                            |                                                                                             
TGGCTAACGCGCTCAGGCAGCTCGTTCATCCATTGATGGTAACGTCCACGAATATTTTGCAGACCTGAAAATGCCCGCCTGCGCGGTTTCGGCGTTTCTTTGCGCGATGCACCGATCAATAACCAGCATGTTTGAATGAGATAACGGACCGGGTCCAGCGGACGCGGACGCGAGGCGTTGATATGC  >  NC_000913/3692480‑3692665

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑