Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,859,397	A→G	V73A (GTG→GCG)	glvG ←	putative 6‑phospho‑beta‑glucosidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,859,397	0	A	G	100.0%	839.9 / NA	238	V73A (GTG→GCG)	glvG	putative 6‑phospho‑beta‑glucosidase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (113/125); total (113/125)

Only 100 of 244 total aligned reads displayed.

TGGCGCAGCGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCACTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACTTCCTGCCGC  >  NC_000913/3859307‑3859486

tGGCGCAGCGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCt                                                                                         <  1:3816187/93‑1 (MQ=255)

tGGCGCAGCGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCt                                                                                         <  1:4329895/93‑1 (MQ=255)

  gcgcAGCGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTc                                                                                       <  1:1179821/93‑1 (MQ=255)

   cgcAGCGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCa                                                                                      <  1:2328032/93‑1 (MQ=255)

      aGCGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGa                                                                                   >  1:5166967/1‑93 (MQ=255)

       gCGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGAt                                                                                  <  2:6213710/93‑1 (MQ=255)

       gCGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGAt                                                                                  >  2:3876178/1‑93 (MQ=255)

        cGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATc                                                                                 <  2:5023537/93‑1 (MQ=255)

         gggATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCg                                                                                <  2:3793450/93‑1 (MQ=255)

          ggATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCgg                                                                               >  2:5927067/1‑93 (MQ=255)

           gATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCggt                                                                              <  1:4329725/93‑1 (MQ=255)

            aTTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCggtg                                                                             >  1:1996932/1‑93 (MQ=255)

            aTTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCggtg                                                                             <  1:4917226/93‑1 (MQ=255)

             ttttttCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCggtgg                                                                            >  2:3627880/1‑93 (MQ=255)

              tttttCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCggtggt                                                                           <  1:5374241/93‑1 (MQ=255)

                tttCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGgtgt                                                                         >  1:1139837/1‑93 (MQ=255)

                 ttCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTa                                                                        >  1:6349458/1‑93 (MQ=255)

                 ttCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTa                                                                        <  1:270350/93‑1 (MQ=255)

                  tCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTaa                                                                       >  1:1956504/1‑93 (MQ=255)

                   cATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAAc                                                                      >  2:4356049/1‑93 (MQ=255)

                    aTCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACt                                                                     >  1:3055811/1‑93 (MQ=255)

                    aTCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACt                                                                     >  1:705643/1‑93 (MQ=255)

                     tCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTa                                                                    >  2:2116602/1‑93 (MQ=255)

                       cAGTTCGCTCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTaaa                                                                  <  1:6018615/93‑1 (MQ=255)

                       cAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTaaa                                                                  <  1:5059864/93‑1 (MQ=255)

                        aGTTCGCACATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAAc                                                                 <  1:2072503/93‑1 (MQ=255)

                         gTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGGGTAACTAAACg                                                                >  2:5525642/1‑93 (MQ=255)

                          ttCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGc                                                               <  1:2411294/93‑1 (MQ=255)

                               gcATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATGAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGt                                                          >  2:3443145/1‑93 (MQ=255)

                                cATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTc                                                         <  1:4699920/93‑1 (MQ=255)

                                cATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTc                                                         <  1:4239096/93‑1 (MQ=255)

                                cATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTc                                                         <  2:4427817/93‑1 (MQ=255)

                                 aTCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTcc                                                        <  2:2590467/93‑1 (MQ=255)

                                 aTCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTcc                                                        <  1:5181764/93‑1 (MQ=255)

                                 aTCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTcc                                                        >  2:2992268/1‑93 (MQ=255)

                                 aTCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTcc                                                        >  2:5784215/1‑93 (MQ=255)

                                 aTCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTcc                                                        <  1:860146/93‑1 (MQ=255)

                                  tCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCg                                                       >  2:6430940/1‑93 (MQ=255)

                                  tCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCg                                                       <  1:3736480/93‑1 (MQ=255)

                                   cGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCgg                                                      <  1:2278565/93‑1 (MQ=255)

                                   cGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCgg                                                      >  2:1167751/1‑93 (MQ=255)

                                    gggTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGgc                                                     <  1:3394238/93‑1 (MQ=255)

                                     ggTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGgcg                                                    >  1:5033469/1‑93 (MQ=255)

                                     ggTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGgcg                                                    >  1:2884891/1‑93 (MQ=255)

                                      gTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGgcgc                                                   <  2:257064/93‑1 (MQ=255)

                                      gTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGgcgc                                                   >  2:2814131/1‑93 (MQ=255)

                                      gTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGgcgc                                                   <  2:3222685/93‑1 (MQ=255)

                                        atgtGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCtt                                                 <  2:6287553/90‑1 (MQ=255)

                                        aTTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCtt                                                 >  2:3272409/1‑93 (MQ=255)

                                         tttGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCttt                                                <  1:4104999/93‑1 (MQ=255)

                                         tttGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCAGGCGCttt                                                <  2:2180946/93‑1 (MQ=255)

                                           tGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCttttt                                              <  2:3908118/93‑1 (MQ=255)

                                           tGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCttttt                                              <  2:1725531/93‑1 (MQ=255)

                                            gCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTc                                             <  1:2457685/93‑1 (MQ=255)

                                             ccGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCt                                            <  2:4211146/93‑1 (MQ=255)

                                             ccGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGGAACTAAACGCAATGTCCGGCGCTTTTTCt                                            >  2:4719612/1‑93 (MQ=255)

                                               gACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCttt                                          >  2:3919864/1‑93 (MQ=255)

                                                 cgcgGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTaa                                        >  1:2586175/1‑93 (MQ=255)

                                                  gcgGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAg                                       <  1:1621749/93‑1 (MQ=255)

                                                  gcgGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAg                                       <  1:6209716/93‑1 (MQ=255)

                                                   cgGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAgg                                      <  2:2952485/93‑1 (MQ=255)

                                                    ggATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGa                                     <  2:4800983/93‑1 (MQ=255)

                                                     gATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGAt                                    >  2:1996663/1‑93 (MQ=255)

                                                     gATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGAt                                    <  2:52641/93‑1 (MQ=255)

                                                      aTGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATg                                   >  1:2936115/1‑93 (MQ=255)

                                                      aTGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATg                                   <  1:4030725/93‑1 (MQ=255)

                                                          gcgcCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACtt                               <  2:5866600/93‑1 (MQ=255)

                                                           cgcCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACttt                              >  1:1775980/1‑93 (MQ=255)

                                                              cATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGGTCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACa                           >  1:3649983/1‑93 (MQ=255)

                                                              cATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACa                           <  2:2351079/93‑1 (MQ=255)

                                                              cATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACa                           >  2:1413190/1‑93 (MQ=255)

                                                               aTGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAg                          >  1:2667191/1‑93 (MQ=255)

                                                               aTGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAg                          >  1:6276646/1‑93 (MQ=255)

                                                                tGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAgg                         >  1:3025251/1‑93 (MQ=255)

                                                                 gACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGc                        >  1:5837326/1‑93 (MQ=255)

                                                                 gACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGc                        <  1:3316848/93‑1 (MQ=255)

                                                                  aCAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCt                       >  1:371343/1‑93 (MQ=255)

                                                                    aaaaTCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTc                     <  1:418120/93‑1 (MQ=255)

                                                                    aaaaTCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTc                     >  2:5994215/1‑93 (MQ=255)

                                                                     aaaTCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCg                    >  1:5673270/1‑93 (MQ=255)

                                                                        tCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCa                 <  1:3233407/93‑1 (MQ=255)

                                                                         cAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCaa                >  2:1743996/1‑93 (MQ=255)

                                                                          aaCGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAAt               <  1:1517363/93‑1 (MQ=255)

                                                                          aaCGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAAt               <  2:411416/93‑1 (MQ=255)

                                                                          aaCGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAAt               >  1:3581235/1‑93 (MQ=255)

                                                                           aCGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATc              >  2:1374386/1‑93 (MQ=255)

                                                                           aCGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATc              <  2:2478760/93‑1 (MQ=255)

                                                                           aCGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTCCTTTAAGGATGACTTTACAGGCTTCGGCAATc              >  2:892834/1‑93 (MQ=255)

                                                                            cGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCa             <  2:4514991/93‑1 (MQ=255)

                                                                              tCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACt           >  2:4630301/1‑93 (MQ=255)

                                                                               cGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACtt          >  1:1758190/1‑93 (MQ=255)

                                                                                gCTGAATGCCGCTTCAGGATCGGTTGTGTAACTGAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCCGCAATCACTTc         <  1:996982/93‑1 (MQ=255)

                                                                                gCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACTTc         >  2:398848/1‑93 (MQ=255)

                                                                                 cTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACTTcc        <  1:2452293/93‑1 (MQ=255)

                                                                                  tGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACTTCCt       <  1:5285195/93‑1 (MQ=255)

                                                                                   gAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACTTCCTg      >  2:3686144/1‑93 (MQ=255)

                                                                                   gAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACTTCCTg      >  1:2748099/1‑93 (MQ=255)

                                                                                     aTGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACTTCCTGcc    <  2:5229047/93‑1 (MQ=255)

                                                                                     aTGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACTTCCTGcc    <  2:456085/93‑1 (MQ=255)

                                                                                     aTGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACTTCCTGcc    <  1:109105/93‑1 (MQ=255)

TGGCGCAGCGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCACTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACTTCCTGCCGC  >  NC_000913/3859307‑3859486

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCGTGGCGCAGCGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCACTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACTTCCTGCCGCGCA  >  NC_000913/3859304‑3859489

CCGTGGCGCAGCGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCG                                                                                              >  SRR4302534.339486/1‑94 (MQ=60)

 CGTGGCGCAGCGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGC                                                                                             >  SRR4302534.4786486/1‑94 (MQ=60)

 CGTGGCGCAGCGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGC                                                                                             >  SRR4302534.409611/1‑94 (MQ=60)

 CGTGGCGCAGCGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGC                                                                                             >  SRR4302534.2112171/1‑94 (MQ=60)

 CGTGGCGCAGCGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGC                                                                                             >  SRR4302534.5605759/1‑94 (MQ=60)

  GTGGCGCAGCGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCT                                                                                            <  SRR4302534.5373129/94‑1 (MQ=60)

   TGGCGCAGCGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTT                                                                                           <  SRR4302534.3918685/94‑1 (MQ=60)

   TGGCGCAGCGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTT                                                                                           <  SRR4302534.4446999/94‑1 (MQ=60)

   TGGCGCAGCGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTT                                                                                           <  SRR4302534.4446998/94‑1 (MQ=60)

    GGCGCAGCGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTC                                                                                          <  SRR4302534.3825694/94‑1 (MQ=60)

     GCGCAGCGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCA                                                                                         <  SRR4302534.1210834/94‑1 (MQ=60)

      CGCAGCGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAG                                                                                        <  SRR4302534.2389804/94‑1 (MQ=60)

      CCCAGCGGGATTTTTTCATCCAGGTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAG                                                                                        <  SRR4302534.2078104/94‑1 (MQ=60)

        CAGCGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGA                                                                                      >  SRR4302534.5306239/1‑94 (MQ=60)

         AGCGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGAT                                                                                     >  SRR4302534.3419117/1‑94 (MQ=60)

         AGCGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGAT                                                                                     <  SRR4302534.5155000/94‑1 (MQ=60)

          ggcGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATC                                                                                    <  SRR4302534.1257367/91‑1 (MQ=60)

          GCGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATC                                                                                    <  SRR4302534.2373154/94‑1 (MQ=60)

          GCGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATC                                                                                    <  SRR4302534.4150105/94‑1 (MQ=60)

           CGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCG                                                                                   <  SRR4302534.616941/94‑1 (MQ=60)

            GGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGG                                                                                  <  SRR4302534.2041496/94‑1 (MQ=60)

              GATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTG                                                                                <  SRR4302534.4446826/94‑1 (MQ=60)

              GATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTG                                                                                >  SRR4302534.2049230/1‑94 (MQ=60)

               ATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGG                                                                               <  SRR4302534.5084886/94‑1 (MQ=60)

               ATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGG                                                                               <  SRR4302534.3895730/94‑1 (MQ=60)

               ATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGG                                                                               <  SRR4302534.5050498/94‑1 (MQ=60)

                 TTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTG                                                                             <  SRR4302534.5519058/94‑1 (MQ=60)

                 TTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTG                                                                             >  SRR4302534.5314115/1‑94 (MQ=60)

                  TTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGT                                                                            <  SRR4302534.1720316/94‑1 (MQ=60)

                  TTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGT                                                                            >  SRR4302534.1189576/1‑94 (MQ=60)

                  TTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGT                                                                            >  SRR4302534.1169662/1‑94 (MQ=60)

                  TTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGT                                                                            <  SRR4302534.1124209/94‑1 (MQ=60)

                   TTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTA                                                                           >  SRR4302534.6520931/1‑94 (MQ=60)

                    TTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAA                                                                          <  SRR4302534.277349/94‑1 (MQ=60)

                    TTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAA                                                                          >  SRR4302534.2007706/1‑94 (MQ=60)

                     TCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAAC                                                                         <  SRR4302534.5285272/94‑1 (MQ=60)

                      CATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACT                                                                        >  SRR4302534.3135992/1‑94 (MQ=60)

                      CATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACT                                                                        >  SRR4302534.722959/1‑94 (MQ=60)

                      CATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACT                                                                        >  SRR4302534.2429488/1‑94 (MQ=60)

                      CATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACT                                                                        <  SRR4302534.1842981/94‑1 (MQ=60)

                      CATCCAGTTCGCGCATCGGGAATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACT                                                                        >  SRR4302534.6489250/1‑94 (MQ=60)

                         CCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAA                                                                     <  SRR4302534.5605309/94‑1 (MQ=60)

                          CAGTTCGCTCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAAC                                                                    <  SRR4302534.6182154/94‑1 (MQ=60)

                          CAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAAC                                                                    <  SRR4302534.5196510/94‑1 (MQ=60)

                          CAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAAC                                                                    <  SRR4302534.4979096/94‑1 (MQ=60)

                          CAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAAC                                                                    >  SRR4302534.5494697/1‑94 (MQ=60)

                           AGTTCGCACATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACG                                                                   <  SRR4302534.2126727/94‑1 (MQ=60)

                             TTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCA                                                                 <  SRR4302534.2475414/94‑1 (MQ=60)

                             TTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCA                                                                 <  SRR4302534.645226/94‑1 (MQ=60)

                                GCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATG                                                              <  SRR4302534.4658696/94‑1 (MQ=60)

                                 CGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGT                                                             >  SRR4302534.1577140/1‑94 (MQ=60)

                                   CATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCC                                                           <  SRR4302534.4353384/94‑1 (MQ=60)

                                   CATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCC                                                           <  SRR4302534.4827511/94‑1 (MQ=60)

                                    ATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCG                                                          >  SRR4302534.2522683/1‑94 (MQ=60)

                                    ATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCG                                                          <  SRR4302534.881856/94‑1 (MQ=60)

                                    ATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCG                                                          <  SRR4302534.5321425/94‑1 (MQ=60)

                                     TCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGG                                                         <  SRR4302534.3056358/94‑1 (MQ=60)

                                     TCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGG                                                         <  SRR4302534.3836849/94‑1 (MQ=60)

                                      CGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGC                                                        <  SRR4302534.2339028/94‑1 (MQ=60)

                                       GGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCG                                                       >  SRR4302534.2960610/1‑94 (MQ=60)

                                       GGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCG                                                       <  SRR4302534.3485304/94‑1 (MQ=60)

                                       GGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCG                                                       >  SRR4302534.5169433/1‑94 (MQ=60)

                                        GGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGC                                                      <  SRR4302534.184438/94‑1 (MQ=60)

                                         GTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCT                                                     >  SRR4302534.4365306/1‑94 (MQ=60)

                                            TTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTT                                                  <  SRR4302534.4215397/94‑1 (MQ=60)

                                             TTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTT                                                 <  SRR4302534.180990/94‑1 (MQ=60)

                                             TTGCCGACGCGGAGGTGCGCCATGACAAAATCAACGTCGCTGAATGCCTCTTCAGTATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTT                                                 <  SRR4302534.6287885/94‑1 (MQ=60)

                                               GCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCT                                               <  SRR4302534.2522984/94‑1 (MQ=60)

                                                 CGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTT                                             <  SRR4302534.6386938/94‑1 (MQ=60)

                                                   ACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAA                                           <  SRR4302534.2505574/94‑1 (MQ=60)

                                                   ACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAA                                           >  SRR4302534.2654640/1‑94 (MQ=60)

                                                     GCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTTTTTAAGG                                         >  SRR4302534.6026942/1‑94 (MQ=60)

                                                     GCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGG                                         <  SRR4302534.6378506/94‑1 (MQ=60)

                                                     GCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGG                                         <  SRR4302534.1664056/94‑1 (MQ=60)

                                                      CGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGA                                        >  SRR4302534.379341/1‑94 (MQ=60)

                                                      CGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGA                                        >  SRR4302534.5867462/1‑94 (MQ=60)

                                                       GGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGAT                                       >  SRR4302534.3052217/1‑94 (MQ=60)

                                                       GGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGAT                                       <  SRR4302534.2520255/94‑1 (MQ=60)

                                                       GGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGAT                                       >  SRR4302534.2683224/1‑94 (MQ=60)

                                                        GATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATG                                      >  SRR4302534.3013177/1‑94 (MQ=60)

                                                        GATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATG                                      <  SRR4302534.5204664/94‑1 (MQ=60)

                                                        GATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTT‑AGGATGA                                     >  SRR4302534.213103/1‑94 (MQ=60)

                                                         ATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGA                                     <  SRR4302534.4138786/94‑1 (MQ=60)

                                                          TGTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGAC                                    <  SRR4302534.3498214/94‑1 (MQ=60)

                                                          TGTGCGCCATGAAAAAATCAACGTCGCTGAATTCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGAC                                    <  SRR4302534.3212352/94‑1 (MQ=60)

                                                           GTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACT                                   <  SRR4302534.2430071/94‑1 (MQ=60)

                                                           GTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACT                                   <  SRR4302534.5370929/94‑1 (MQ=60)

                                                           GTGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGCAGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTCAGGATGACT                                   >  SRR4302534.2866593/1‑94 (MQ=60)

                                                            TGCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTT                                  >  SRR4302534.2656639/1‑94 (MQ=60)

                                                             GCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTT                                 >  SRR4302534.1822100/1‑94 (MQ=60)

                                                             GCGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTT                                 <  SRR4302534.2992305/94‑1 (MQ=60)

                                                              CGCCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTA                                >  SRR4302534.2613603/1‑94 (MQ=60)

                                                                CCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGGTCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACA                              >  SRR4302534.3748076/1‑94 (MQ=60)

                                                                CCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACA                              <  SRR4302534.3839857/94‑1 (MQ=60)

                                                                CCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACA                              >  SRR4302534.2771027/1‑94 (MQ=60)

                                                                CCATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACA                              <  SRR4302534.3113677/94‑1 (MQ=60)

                                                                 CATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAG                             >  SRR4302534.6446541/1‑94 (MQ=60)

                                                                 CATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAG                             >  SRR4302534.2737691/1‑94 (MQ=60)

                                                                  ATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGG                            <  SRR4302534.1757083/94‑1 (MQ=60)

                                                                  ATGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGG                            >  SRR4302534.3104540/1‑94 (MQ=60)

                                                                   TGACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGC                           >  SRR4302534.5995789/1‑94 (MQ=60)

                                                                    GACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCT                          <  SRR4302534.3405506/94‑1 (MQ=60)

                                                                    GACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCT                          <  SRR4302534.4224152/94‑1 (MQ=60)

                                                                    GACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCT                          >  SRR4302534.380813/1‑94 (MQ=60)

                                                                     ACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTT                         <  SRR4302534.1019567/94‑1 (MQ=60)

                                                                     ACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTT                         >  SRR4302534.2143327/1‑94 (MQ=60)

                                                                     ACAAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTT                         >  SRR4302534.2814304/1‑94 (MQ=60)

                                                                     ACAAAATCAACGTCACTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTT                         <  SRR4302534.6086942/94‑1 (MQ=60)

                                                                      CACAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTC                        >  SRR4302534.3439330/1‑94 (MQ=60)

                                                                       AAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCG                       <  SRR4302534.428817/94‑1 (MQ=60)

                                                                       AAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCG                       >  SRR4302534.5826869/1‑94 (MQ=60)

                                                                       AAAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCG                       >  SRR4302534.3718323/1‑94 (MQ=60)

                                                                        AAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGG                      >  SRR4302534.3374568/1‑94 (MQ=60)

                                                                        AAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGG                      <  SRR4302534.4756547/94‑1 (MQ=60)

                                                                        AAATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGG                      >  SRR4302534.429835/1‑94 (MQ=60)

                                                                          ATCAACGTCGCTGAATTCGGCTTCAGGATCGGTGGTGTACCTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCA                    <  SRR4302534.5194938/94‑1 (MQ=60)

                                                                          ATCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCA                    <  SRR4302534.855350/94‑1 (MQ=60)

                                                                           TCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAA                   >  SRR4302534.6267479/1‑94 (MQ=60)

                                                                           TCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAA                   >  SRR4302534.548630/1‑94 (MQ=60)

                                                                           TCAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAA                   <  SRR4302534.3319366/94‑1 (MQ=60)

                                                                            CAACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAAT                  >  SRR4302534.3677561/1‑94 (MQ=60)

                                                                             AACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATC                 <  SRR4302534.1557226/94‑1 (MQ=60)

                                                                             AACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATC                 >  SRR4302534.1504508/1‑94 (MQ=60)

                                                                              ACGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCA                <  SRR4302534.3805861/94‑1 (MQ=60)

                                                                               CGTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCAC               >  SRR4302534.4140705/1‑94 (MQ=60)

                                                                                GTCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACT              >  SRR4302534.205821/1‑94 (MQ=60)

                                                                                 TCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACTT             >  SRR4302534.1803821/1‑94 (MQ=60)

                                                                                 TCGCTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACTT             <  SRR4302534.4430162/94‑1 (MQ=60)

                                                                                   GCTGAATGCCGCTTCAGGATCGGTTGTGTAACTGAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCCGCAATCACTTCC           <  SRR4302534.1022522/94‑1 (MQ=60)

                                                                                    CTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACTTCCT          <  SRR4302534.681256/94‑1 (MQ=60)

                                                                                    CTGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACTTCCT          <  SRR4302534.2517451/94‑1 (MQ=60)

                                                                                     TGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACTTCCTG         <  SRR4302534.5427868/94‑1 (MQ=60)

                                                                                     TGAATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACTTCCTG         >  SRR4302534.2820499/1‑94 (MQ=60)

                                                                                      GAATGCCGCTTCATGATGGGTGGTGTAACTAAGCGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTAACAGGCTACGGCAATCACTTCCTGC        <  SRR4302534.115302/94‑1 (MQ=60)

                                                                                       AATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTATAGGCTTCGGCAATCACTTCCTGCC       >  SRR4302534.99630/1‑94 (MQ=60)

                                                                                       AATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACTTCCTGCC       >  SRR4302534.5978241/1‑94 (MQ=60)

                                                                                       AATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACTTCCTGCC       >  SRR4302534.3161639/1‑94 (MQ=60)

                                                                                       AATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACTTCCTGCC       >  SRR4302534.2847463/1‑94 (MQ=60)

                                                                                        ATGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACTTCCTGCCG      <  SRR4302534.112014/94‑1 (MQ=60)

                                                                                         TGCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACTTCCTGCCGC     >  SRR4302534.4049298/1‑94 (MQ=60)

                                                                                          GCCGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACTTCCTGCCGCG    >  SRR4302534.6515894/1‑94 (MQ=60)

                                                                                            CGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACTTCCTGCCGCGCC  >  SRR4302534.4066894/1‑94 (MQ=60)

                                                                                            CGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACTTCCTGCCGCGCA  <  SRR4302534.6202027/94‑1 (MQ=60)

                                                                                            CGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACTTCCTGCCGCGCA  <  SRR4302534.4769740/94‑1 (MQ=60)

                                                                                            CGCTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACTTCCTGCCGCGCA  >  SRR4302534.4531687/1‑94 (MQ=60)

CCGTGGCGCAGCGGGATTTTTTCATCCAGTTCGCGCATCGGGTATTTGCCGACGCGGATGTGCGCCATGACAAAATCAACGTCGCTGAATGCCACTTCAGGATCGGTGGTGTAACTAAACGCAATGTCCGGCGCTTTTTCTTTAAGGATGACTTTACAGGCTTCGGCAATCACTTCCTGCCGCGCA  >  NC_000913/3859304‑3859489

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`