Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,878,432	A→G	C140R (TGC→CGC)	recF ←	RecF

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,878,432	0	A	G	100.0%	795.7 / NA	230	C140R (TGC→CGC)	recF	RecF
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (110/120); total (110/120)

Only 100 of 238 total aligned reads displayed.

GTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGT  >  NC_000913/3878342‑3878521

gtgtCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTc                                                                                         <  1:5603301/93‑1 (MQ=255)

gtgtCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTc                                                                                         >  2:1827488/1‑93 (MQ=255)

gtgtCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTc                                                                                         <  2:1627256/93‑1 (MQ=255)

 tgtCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTcc                                                                                        >  2:5356203/1‑93 (MQ=255)

  gtCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTccc                                                                                       <  1:4811682/93‑1 (MQ=255)

  gtCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTccc                                                                                       >  2:1195078/1‑93 (MQ=255)

   tCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTcccc                                                                                      >  1:5717166/1‑93 (MQ=255)

    cACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCa                                                                                     <  2:1346151/93‑1 (MQ=255)

    cACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCa                                                                                     <  2:225779/93‑1 (MQ=255)

     aCCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAg                                                                                    >  2:4398431/1‑93 (MQ=255)

       cTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTc                                                                                  >  2:4984937/1‑93 (MQ=255)

        tGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCg                                                                                 >  2:6382638/1‑93 (MQ=255)

         ggCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGa                                                                                >  1:791205/1‑93 (MQ=255)

             cAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTTGTTGTGAAAGCGTCCCCAGTCGAGGaa                                                                            <  1:3494039/93‑1 (MQ=255)

             cAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGaa                                                                            <  2:738349/93‑1 (MQ=255)

              aGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAAt                                                                           <  2:2582439/93‑1 (MQ=255)

               gcgcCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCTCACTCGAGGAATg                                                                          >  1:1344962/1‑93 (MQ=255)

               gcgcCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATg                                                                          <  1:4399188/93‑1 (MQ=255)

                cgccgcATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGc                                                                         <  2:4959628/93‑1 (MQ=255)

                 gccgcATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGct                                                                        >  1:4426951/1‑93 (MQ=255)

                  ccgcATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGctc                                                                       <  2:548443/93‑1 (MQ=255)

                   cgcATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGctct                                                                      >  2:3681611/1‑93 (MQ=255)

                    gcATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCtctt                                                                     <  1:1605616/93‑1 (MQ=255)

                    gcATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCtctt                                                                     <  2:790375/93‑1 (MQ=255)

                     cATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCtcttc                                                                    <  2:203733/93‑1 (MQ=255)

                      aTTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCtcttct                                                                   >  2:5533041/1‑93 (MQ=255)

                       ttGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTg                                                                  <  2:3077270/93‑1 (MQ=255)

                           gctgctTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTAtt                                                              >  2:3758777/1‑93 (MQ=255)

                           gctgctTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTAtt                                                              >  2:5344154/1‑93 (MQ=255)

                           gctgctTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTAtt                                                              <  1:23041/93‑1 (MQ=255)

                             tgctTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTg                                                            <  2:2856647/93‑1 (MQ=255)

                               ctTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTggg                                                          <  1:5074269/93‑1 (MQ=255)

                                ttGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTgggg                                                         >  1:592821/1‑93 (MQ=255)

                                ttGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTgggg                                                         >  1:2483093/1‑93 (MQ=255)

                                 tGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGgc                                                        <  1:4223625/93‑1 (MQ=255)

                                 tGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGgc                                                        <  2:5068102/93‑1 (MQ=255)

                                   aGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGgccg                                                      >  1:1874930/1‑93 (MQ=255)

                                    gCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCACCAGTCGAGGAATGCTCTTCTGTATTTGGGgccgc                                                     >  1:4560381/1‑93 (MQ=255)

                                       aTCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGt                                                  >  2:2525699/1‑93 (MQ=255)

                                       aTCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGt                                                  >  2:1689146/1‑93 (MQ=255)

                                       aTCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGt                                                  <  1:5946221/93‑1 (MQ=255)

                                       aTCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGt                                                  >  2:4229447/1‑93 (MQ=255)

                                        tCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGtt                                                 >  2:2207148/1‑93 (MQ=255)

                                         cGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTg                                                <  2:2629255/93‑1 (MQ=255)

                                         cGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTg                                                <  2:4192201/93‑1 (MQ=255)

                                         cGCTTGAGATTGCGCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTg                                                <  1:2736644/93‑1 (MQ=255)

                                          ccTTGAGATTCCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGa                                               <  1:4014280/92‑1 (MQ=255)

                                           cTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGag                                              <  1:2610312/93‑1 (MQ=255)

                                            ttGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGagt                                             <  2:4710017/93‑1 (MQ=255)

                                            ttGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGagt                                             <  1:4761848/93‑1 (MQ=255)

                                            ttGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGagt                                             >  1:3071257/1‑93 (MQ=255)

                                             tGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGagta                                            <  1:3938246/93‑1 (MQ=255)

                                              gagaTTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGagtaa                                           >  2:3827881/1‑93 (MQ=255)

                                              gagaTTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGagtaa                                           >  2:2353744/1‑93 (MQ=255)

                                                gaTTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGagtaaag                                         >  1:3171504/1‑93 (MQ=255)

                                                  ttGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGagtaaagta                                       <  1:4363413/93‑1 (MQ=255)

                                                  ttGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGagtaaagta                                       <  2:1440787/93‑1 (MQ=255)

                                                  ttGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGagtaaagta                                       >  1:704163/1‑93 (MQ=255)

                                                  atGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGagtaaagta                                       <  2:696998/92‑1 (MQ=255)

                                                      tCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAAcc                                   <  1:6221987/93‑1 (MQ=255)

                                                      tCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAAcc                                   >  1:3311187/1‑93 (MQ=255)

                                                       ccAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAAccc                                  <  1:1815109/93‑1 (MQ=255)

                                                        cAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCt                                 <  1:5150511/93‑1 (MQ=255)

                                                        cAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCt                                 <  2:3372753/93‑1 (MQ=255)

                                                         aGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCtt                                >  2:4804312/1‑93 (MQ=255)

                                                         aGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCtt                                <  1:143876/93‑1 (MQ=255)

                                                         aGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCtt                                <  1:1091281/93‑1 (MQ=255)

                                                          ggCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTc                               <  1:6075837/93‑1 (MQ=255)

                                                          ggCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTc                               >  1:4305396/1‑93 (MQ=255)

                                                          ggCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTc                               <  2:5250433/93‑1 (MQ=255)

                                                             ggTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTgg                            >  1:4091043/1‑93 (MQ=255)

                                                              gTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGc                           >  1:1224631/1‑93 (MQ=255)

                                                                gAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGACGCCGTTGAGTAAAGTAAACCCTTCTGGCGt                         >  1:1642362/1‑93 (MQ=255)

                                                                 aaaaaTCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGtt                        <  1:1786144/93‑1 (MQ=255)

                                                                 aaaaaTCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGtt                        >  2:4912663/1‑93 (MQ=255)

                                                                  aaaaTCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTa                       >  2:6047836/1‑93 (MQ=255)

                                                                  aaaaTCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTa                       >  1:1913381/1‑93 (MQ=255)

                                                                    aaTCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATc                     <  2:4513201/93‑1 (MQ=255)

                                                                      tCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCaa                   >  2:3105886/1‑93 (MQ=255)

                                                                      tCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCaa                   >  1:3703607/1‑93 (MQ=255)

                                                                       ccGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAAc                  <  2:2796298/93‑1 (MQ=255)

                                                                       ccGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAAc                  <  1:6452929/93‑1 (MQ=255)

                                                                       ccGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTCATCAAc                  <  1:5358420/93‑1 (MQ=255)

                                                                        cGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACt                 >  1:709298/1‑93 (MQ=255)

                                                                           gTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCa              <  1:5258953/93‑1 (MQ=255)

                                                                           gTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCa              >  1:5905982/1‑93 (MQ=255)

                                                                            ttCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCAt             <  1:759761/93‑1 (MQ=255)

                                                                             tCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCAtt            <  1:3528651/93‑1 (MQ=255)

                                                                             tCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCAtt            <  1:183051/93‑1 (MQ=255)

                                                                              cGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTg           >  1:3412613/1‑93 (MQ=255)

                                                                              cGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTg           >  1:4579899/1‑93 (MQ=255)

                                                                               gTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTgg          <  2:6026868/93‑1 (MQ=255)

                                                                                ttGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGc         <  1:1719596/93‑1 (MQ=255)

                                                                                  gtgAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCAt       >  2:5671869/1‑93 (MQ=255)

                                                                                  gtgAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCAt       >  2:3227608/1‑93 (MQ=255)

                                                                                   tgAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATc      <  1:1755019/93‑1 (MQ=255)

                                                                                    gAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGGATTGGCATCa     >  1:2026742/1‑93 (MQ=255)

                                                                                    gAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCa     >  1:3621991/1‑93 (MQ=255)

                                                                                     aaaGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAg    <  2:6266934/93‑1 (MQ=255)

                                                                                      aaGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAgg   <  1:2156528/93‑1 (MQ=255)

GTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGT  >  NC_000913/3878342‑3878521

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ACGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGC  >  NC_000913/3878340‑3878525

ACGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGT                                                                                              >  SRR4302534.6344298/1‑94 (MQ=60)

  GTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCC                                                                                            <  SRR4302534.1398157/94‑1 (MQ=60)

  GTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCC                                                                                            <  SRR4302534.5754844/94‑1 (MQ=60)

   TGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCC                                                                                           >  SRR4302534.1310045/1‑94 (MQ=60)

    GTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCC                                                                                          <  SRR4302534.4942315/94‑1 (MQ=60)

    GTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCC                                                                                          >  SRR4302534.5872067/1‑94 (MQ=60)

     TCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCA                                                                                         <  SRR4302534.4021307/94‑1 (MQ=60)

     TCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCA                                                                                         <  SRR4302534.5918620/94‑1 (MQ=60)

      CACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGTAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAG                                                                                        >  SRR4302534.3841936/1‑94 (MQ=60)

      CACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAG                                                                                        <  SRR4302534.4164259/94‑1 (MQ=60)

      CACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAG                                                                                        <  SRR4302534.3420191/94‑1 (MQ=60)

        CCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCACAGTC                                                                                      >  SRR4302534.4104105/1‑94 (MQ=60)

         CTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCG                                                                                     <  SRR4302534.1805403/94‑1 (MQ=60)

          TGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGA                                                                                    >  SRR4302534.6083335/1‑94 (MQ=60)

          TGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGA                                                                                    >  SRR4302534.811021/1‑94 (MQ=60)

             CGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGA                                                                                 >  SRR4302534.4586842/1‑94 (MQ=60)

               CAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTTGTTGTGAAAGCGTCCCCAGTCGAGGAAT                                                                               <  SRR4302534.3587974/94‑1 (MQ=60)

               CAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAAT                                                                               >  SRR4302534.179614/1‑94 (MQ=60)

               CAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAAT                                                                               >  SRR4302534.4565623/1‑94 (MQ=60)

                AGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCTCACTCGAGGAATG                                                                              >  SRR4302534.1380422/1‑94 (MQ=60)

                AGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATG                                                                              >  SRR4302534.3200582/1‑94 (MQ=60)

                 GCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGC                                                                             >  SRR4302534.1901326/1‑94 (MQ=60)

                 GCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGC                                                                             <  SRR4302534.4517886/94‑1 (MQ=60)

                  CGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCT                                                                            >  SRR4302534.2119561/1‑94 (MQ=60)

                  CGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCT                                                                            >  SRR4302534.4546484/1‑94 (MQ=60)

                   GCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTC                                                                           >  SRR4302534.2025095/1‑94 (MQ=60)

                   GCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTC                                                                           >  SRR4302534.1667612/1‑94 (MQ=60)

                    CCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCT                                                                          <  SRR4302534.1878733/94‑1 (MQ=60)

                    CCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCT                                                                          <  SRR4302534.5126269/94‑1 (MQ=60)

                    CCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCT                                                                          >  SRR4302534.5393846/1‑94 (MQ=60)

                      GCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTC                                                                        <  SRR4302534.1647549/94‑1 (MQ=60)

                       CATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCT                                                                       <  SRR4302534.724549/94‑1 (MQ=60)

                       CATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCT                                                                       >  SRR4302534.76259/1‑94 (MQ=60)

                       CATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCT                                                                       >  SRR4302534.1710130/1‑94 (MQ=60)

                         TTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGT                                                                     <  SRR4302534.6096407/94‑1 (MQ=60)

                           GCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTAT                                                                   <  SRR4302534.1858937/94‑1 (MQ=60)

                             GCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTT                                                                 <  SRR4302534.4363296/94‑1 (MQ=60)

                             GCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTT                                                                 >  SRR4302534.4939932/1‑94 (MQ=60)

                             GCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTT                                                                 <  SRR4302534.23655/94‑1 (MQ=60)

                             CCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTT                                                                 <  SRR4302534.2108586/94‑1 (MQ=60)

                              CTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTG                                                                >  SRR4302534.6031370/1‑94 (MQ=60)

                               tgctggagcaatcgcgtgcaagtaatagaaGCGGTGAAAAATCCGGGTTCTTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGG                                                               <  SRR4302534.3234295/64‑1 (MQ=60)

                               TGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGG                                                               <  SRR4302534.703173/94‑1 (MQ=60)

                               TGCTTGAGCAAGCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGG                                                               <  SRR4302534.157792/94‑1 (MQ=60)

                                GCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGG                                                              >  SRR4302534.3746333/1‑94 (MQ=60)

                                 CTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGG                                                             >  SRR4302534.607296/1‑94 (MQ=60)

                                 CTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGG                                                             <  SRR4302534.3441834/94‑1 (MQ=60)

                                 CTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGG                                                             <  SRR4302534.5211250/94‑1 (MQ=60)

                                 CTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGG                                                             >  SRR4302534.2549036/1‑94 (MQ=60)

                                  TTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGC                                                            >  SRR4302534.2985394/1‑94 (MQ=60)

                                   TGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCC                                                           <  SRR4302534.4337472/94‑1 (MQ=60)

                                   TGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCC                                                           >  SRR4302534.1689921/1‑94 (MQ=60)

                                    GAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCG                                                          >  SRR4302534.1923725/1‑94 (MQ=60)

                                     AGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCACCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGC                                                         >  SRR4302534.4684021/1‑94 (MQ=60)

                                      GCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCC                                                        >  SRR4302534.6161370/1‑94 (MQ=60)

                                       CAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCG                                                       <  SRR4302534.5703996/94‑1 (MQ=60)

                                        AATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGT                                                      >  SRR4302534.4533050/1‑94 (MQ=60)

                                         ATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTT                                                     >  SRR4302534.616595/1‑94 (MQ=60)

                                         ATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTT                                                     <  SRR4302534.6107671/94‑1 (MQ=60)

                                          agggaTGAGATTGCTCCAGGCAGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTG                                                    <  SRR4302534.305117/89‑1 (MQ=60)

                                           CGCTTGAGATTGCGCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGA                                                   <  SRR4302534.2808777/94‑1 (MQ=60)

                                            CCTTGAGATTCCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAG                                                  <  SRR4302534.4121840/94‑1 (MQ=60)

                                             CTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGT                                                 >  SRR4302534.3151941/1‑94 (MQ=60)

                                             CTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGT                                                 <  SRR4302534.2679378/94‑1 (MQ=60)

                                              TTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTA                                                <  SRR4302534.4891142/94‑1 (MQ=60)

                                              TTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTA                                                <  SRR4302534.4804640/94‑1 (MQ=60)

                                               TGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGACTGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAA                                               >  SRR4302534.2798615/1‑94 (MQ=60)

                                               TGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAA                                               <  SRR4302534.4043724/94‑1 (MQ=60)

                                               TGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAA                                               >  SRR4302534.523814/1‑94 (MQ=60)

                                               TGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAA                                               >  SRR4302534.4292919/1‑94 (MQ=60)

                                                 AGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAG                                             >  SRR4302534.4692717/1‑94 (MQ=60)

                                                 AGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAG                                             >  SRR4302534.3255176/1‑94 (MQ=60)

                                                   ATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTA                                           >  SRR4302534.721434/1‑94 (MQ=60)

                                                   ATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTA                                           >  SRR4302534.4449785/1‑94 (MQ=60)

                                                   ATCGCTACAGGCGATGAAAAATCCGGGTTCGTTGTGAAAGCGCCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCACCGTTGAGTAAAGTA                                           <  SRR4302534.77129/94‑1 (MQ=60)

                                                    TTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAA                                          <  SRR4302534.897755/94‑1 (MQ=60)

                                                    TTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAA                                          <  SRR4302534.4481076/94‑1 (MQ=60)

                                                      GCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAAC                                        >  SRR4302534.3708986/1‑94 (MQ=60)

                                                       CTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACC                                       >  SRR4302534.3399622/1‑94 (MQ=60)

                                                       CTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACC                                       >  SRR4302534.1954390/1‑94 (MQ=60)

                                                        TCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCC                                      <  SRR4302534.6390970/94‑1 (MQ=60)

                                                         CCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACTCT                                     <  SRR4302534.6347657/94‑1 (MQ=60)

                                                         CCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCT                                     <  SRR4302534.2994128/94‑1 (MQ=60)

                                                         CCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCT                                     <  SRR4302534.1862277/94‑1 (MQ=60)

                                                          CAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTT                                    <  SRR4302534.5289458/94‑1 (MQ=60)

                                                           AGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTC                                   >  SRR4302534.4422101/1‑94 (MQ=60)

                                                           AGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTC                                   <  SRR4302534.147637/94‑1 (MQ=60)

                                                           AGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTC                                   <  SRR4302534.1119674/94‑1 (MQ=60)

                                                            GGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCT                                  <  SRR4302534.549367/94‑1 (MQ=60)

                                                            GGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCT                                  <  SRR4302534.6241038/94‑1 (MQ=60)

                                                            GGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCT                                  <  SRR4302534.2663801/94‑1 (MQ=60)

                                                             GCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTG                                 <  SRR4302534.523466/94‑1 (MQ=60)

                                                              CGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGG                                >  SRR4302534.3311366/1‑94 (MQ=60)

                                                              CGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGG                                >  SRR4302534.4200960/1‑94 (MQ=60)

                                                               GGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGC                               >  SRR4302534.1256873/1‑94 (MQ=60)

                                                                GTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCG                              >  SRR4302534.3589545/1‑94 (MQ=60)

                                                                GTGAAAAATCCGGGGTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGTCGCCGTTGAGTAAAGTAAACCCTTCTGGCG                              >  SRR4302534.3906783/1‑94 (MQ=60)

                                                                 TGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGACGCCGTTGAGTAAAGTAAACCCTTCTGGCGT                             >  SRR4302534.1685186/1‑94 (MQ=60)

                                                                  GAAAAATCCGGGTTCGTTGTGAAATCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTT                            <  SRR4302534.6515748/94‑1 (MQ=60)

                                                                   AAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTA                           >  SRR4302534.1963321/1‑94 (MQ=60)

                                                                   AAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTA                           <  SRR4302534.1832516/94‑1 (MQ=60)

                                                                     AAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATC                         <  SRR4302534.1204884/94‑1 (MQ=60)

                                                                     AAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATC                         >  SRR4302534.1872384/1‑94 (MQ=60)

                                                                      AATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCA                        <  SRR4302534.1820693/94‑1 (MQ=60)

                                                                       ATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAA                       >  SRR4302534.4139443/1‑94 (MQ=60)

                                                                       ATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAA                       >  SRR4302534.3803173/1‑94 (MQ=60)

                                                                         CCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACT                     >  SRR4302534.726710/1‑94 (MQ=60)

                                                                         CCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACT                     <  SRR4302534.6626809/94‑1 (MQ=60)

                                                                         CCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTCATCAACT                     <  SRR4302534.5502861/94‑1 (MQ=60)

                                                                           GGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGC                   >  SRR4302534.1442734/1‑94 (MQ=60)

                                                                            GGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCA                  >  SRR4302534.4808914/1‑94 (MQ=60)

                                                                            GGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCA                  >  SRR4302534.6066349/1‑94 (MQ=60)

                                                                            GGCTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCA                  >  SRR4302534.2243424/1‑94 (MQ=60)

                                                                             GTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCAT                 <  SRR4302534.5401052/94‑1 (MQ=60)

                                                                              TTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATT                <  SRR4302534.778616/94‑1 (MQ=60)

                                                                              TTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATT                <  SRR4302534.2498651/94‑1 (MQ=60)

                                                                               TCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTG               <  SRR4302534.187865/94‑1 (MQ=60)

                                                                               TCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTG               >  SRR4302534.4704117/1‑94 (MQ=60)

                                                                               TCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTG               <  SRR4302534.4501374/94‑1 (MQ=60)

                                                                               TCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTG               >  SRR4302534.3504271/1‑94 (MQ=60)

                                                                               TCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTG               <  SRR4302534.3623562/94‑1 (MQ=60)

                                                                                CGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGG              <  SRR4302534.807808/94‑1 (MQ=60)

                                                                                  TTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCA            <  SRR4302534.1764265/94‑1 (MQ=60)

                                                                                  TTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACCGCATTGGCA            <  SRR4302534.6471274/94‑1 (MQ=60)

                                                                                   TGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCAT           <  SRR4302534.4476318/94‑1 (MQ=60)

                                                                                    GTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATC          <  SRR4302534.5806224/94‑1 (MQ=60)

                                                                                     TGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGGATTGGCATCA         >  SRR4302534.2079759/1‑94 (MQ=60)

                                                                                     TGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCA         <  SRR4302534.1800591/94‑1 (MQ=60)

                                                                                     TGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCA         >  SRR4302534.3523847/1‑94 (MQ=60)

                                                                                     TGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCA         >  SRR4302534.3719367/1‑94 (MQ=60)

                                                                                      GACAGCGTCCCCAGACGAGAAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCCGGCGTTATCAACTGCATTGGCATCAG        <  SRR4302534.2547843/94‑1 (MQ=60)

                                                                                      GAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAG        <  SRR4302534.3611298/94‑1 (MQ=60)

                                                                                        AAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGT      <  SRR4302534.2213457/94‑1 (MQ=60)

                                                                                         AGCGTCCCCGGCCGAGGAACGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACACTTCCGGCGTTATCAAATGCATTGGCATCAGGTG     >  SRR4302534.6498234/1‑94 (MQ=60)

                                                                                         AGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTG     >  SRR4302534.3563463/1‑94 (MQ=60)

                                                                                          GCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGC    <  SRR4302534.540426/94‑1 (MQ=60)

                                                                                          GCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGC    <  SRR4302534.3509392/94‑1 (MQ=60)

                                                                                           CGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCG   >  SRR4302534.1267423/1‑94 (MQ=60)

                                                                                            GTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGC  >  SRR4302534.1790222/1‑94 (MQ=60)

ACGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGC  >  NC_000913/3878340‑3878525

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`