Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 884 257.2 12958910 96.9% 12557183 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,931,033 A→G G31G (GGA→GGG)  rbsD → RbsD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,931,0330AG100.0% 746.6 / NA 213G31G (GGA→GGG) rbsDRbsD
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (136/77);  total (136/77)

Only 100 of 223 total aligned reads displayed.

GGGTCAGCGAAACGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGACATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGGTGTACC  >  NC_000913/3930943‑3931122
                                                                                          |                                                                                         
gggTCAGCGAAACGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCa                                                                                         <  1:3192698/93‑1 (MQ=255)
    cAGCGAAACGTTTCGCTGATTGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATAcc                                                                                     >  2:4443448/1‑93 (MQ=255)
    cAGCGAAACGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATAcg                                                                                     >  2:172575/1‑92 (MQ=255)
     aGCGAAACGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCg                                                                                    >  1:6291649/1‑93 (MQ=255)
        gAAACGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATa                                                                                 >  1:941006/1‑93 (MQ=255)
        gAAACGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATa                                                                                 >  2:3154352/1‑93 (MQ=255)
        gAAACGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATa                                                                                 <  2:4144352/93‑1 (MQ=255)
         aaaCGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATAc                                                                                >  1:1800014/1‑93 (MQ=255)
         aaaCGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATAc                                                                                >  1:1612293/1‑93 (MQ=255)
         aaaCGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATAc                                                                                >  2:4316225/1‑93 (MQ=255)
           aCGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGc                                                                              >  2:6005152/1‑93 (MQ=255)
           aCGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGc                                                                              >  2:4287333/1‑93 (MQ=255)
           aCGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGc                                                                              <  2:6476678/93‑1 (MQ=255)
            cGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCt                                                                             <  1:1346519/93‑1 (MQ=255)
             gTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCtg                                                                            <  2:4367934/93‑1 (MQ=255)
              tttCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCtgg                                                                           <  1:3426192/93‑1 (MQ=255)
                 cGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCtggtgg                                                                        >  1:34118/1‑93 (MQ=255)
                     gATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGgtgtg                                                                    >  2:718562/1‑93 (MQ=255)
                     gATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGgtgtg                                                                    <  1:4212255/93‑1 (MQ=255)
                      aTGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGgtgtgt                                                                   >  2:5141037/1‑93 (MQ=255)
                      aTGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGgtgtgt                                                                   >  1:3367678/1‑93 (MQ=255)
                      aTGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGgtgtgt                                                                   <  2:1479625/93‑1 (MQ=255)
                          agaAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATg                                                               >  2:2501840/1‑93 (MQ=255)
                           gaAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATgt                                                              >  2:2689324/1‑92 (MQ=255)
                           gaAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGc                                                              <  1:6199351/93‑1 (MQ=255)
                           gaAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGc                                                              <  2:6259031/93‑1 (MQ=255)
                             aaaaaaTGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTg                                                            >  2:924396/1‑93 (MQ=255)
                             aaaaaaTGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTg                                                            >  2:5419017/1‑93 (MQ=255)
                             aaaaaaTGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTg                                                            >  1:5584460/1‑93 (MQ=255)
                              aaaaaTGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTgg                                                           >  2:5063680/1‑93 (MQ=255)
                              aaaaaTGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTgg                                                           >  1:3866021/1‑93 (MQ=255)
                                aaaTGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGtt                                                         >  1:5074778/1‑93 (MQ=255)
                                 aaTGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGttt                                                        >  1:5254240/1‑93 (MQ=255)
                                  aTGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTa                                                       <  2:449868/93‑1 (MQ=255)
                                  aTGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTa                                                       <  1:2279412/93‑1 (MQ=255)
                                  aTGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTa                                                       >  1:1686458/1‑93 (MQ=255)
                                   tGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTAc                                                      <  1:2886181/93‑1 (MQ=255)
                                   tGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTCGAGGAGTGTGCTGCTGGTTTAc                                                      >  1:2777094/1‑93 (MQ=255)
                                    gAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTAcc                                                     <  2:2718797/93‑1 (MQ=255)
                                    gAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTAcc                                                     >  1:4722635/1‑93 (MQ=255)
                                       aaaaGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCAt                                                  >  1:5421005/1‑93 (MQ=255)
                                       aaaaGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCAt                                                  <  1:4951431/93‑1 (MQ=255)
                                        aaaGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATc                                                 >  2:2364686/1‑93 (MQ=255)
                                         aaGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATcc                                                >  2:4823494/1‑93 (MQ=255)
                                          aGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATccc                                               >  2:1820850/1‑93 (MQ=255)
                                          aGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATccc                                               >  2:4576430/1‑93 (MQ=255)
                                          aGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATccc                                               >  1:1234366/1‑93 (MQ=255)
                                          aGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATccc                                               >  1:1036669/1‑93 (MQ=255)
                                           ggCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATcccc                                              >  2:5667431/1‑93 (MQ=255)
                                               ccGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCaaaa                                          >  1:3148596/1‑93 (MQ=255)
                                               ccGTTCTTAAGTCTGATATTTCATCGGTGATCTCCCTTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCaaaa                                          <  2:4040382/93‑1 (MQ=255)
                                                cGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAg                                         >  1:1941723/1‑93 (MQ=255)
                                                 gTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGCGTGGGATGCTGGTTTACCCATCCCCaatact                                        >  1:766724/1‑89 (MQ=255)
                                                  ttCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTa                                       >  1:5014709/1‑93 (MQ=255)
                                                   tCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTAc                                      >  1:5782626/1‑93 (MQ=255)
                                                   tCTTAATTCTGAGATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTAc                                      >  1:5151662/1‑93 (MQ=255)
                                                    cTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACa                                     <  2:3777557/93‑1 (MQ=255)
                                                    cTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACa                                     <  1:3716257/93‑1 (MQ=255)
                                                     ttAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACaa                                    >  2:2622974/1‑93 (MQ=255)
                                                      tAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAAc                                   >  1:221895/1‑93 (MQ=255)
                                                      tAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAAc                                   <  1:464257/93‑1 (MQ=255)
                                                       aaTTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAAcg                                  <  2:1708451/93‑1 (MQ=255)
                                                        aTTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAAcgc                                 >  2:254782/1‑93 (MQ=255)
                                                        aTTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAAcgc                                 <  2:5941030/93‑1 (MQ=255)
                                                         ttCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAAcgcg                                >  2:5507467/1‑93 (MQ=255)
                                                         ttCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGAGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAAcgcg                                >  2:3459046/1‑93 (MQ=255)
                                                           cTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAAGGAGTa                              >  2:1359495/1‑93 (MQ=255)
                                                           cTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTa                              <  1:3289996/93‑1 (MQ=255)
                                                           cTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTa                              <  2:4387158/93‑1 (MQ=255)
                                                             gATATTTCATCGGTGCTCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATc                            <  1:6477571/93‑1 (MQ=255)
                                                              atatTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCg                           >  2:2773053/1‑93 (MQ=255)
                                                               tatTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGa                          >  1:2607035/1‑93 (MQ=255)
                                                                atTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGat                         <  2:1209846/93‑1 (MQ=255)
                                                                atTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGat                         >  1:146848/1‑93 (MQ=255)
                                                                 tttCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGata                        <  1:4847436/93‑1 (MQ=255)
                                                                 tttCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGata                        <  2:1645461/93‑1 (MQ=255)
                                                                  ttCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGatat                       >  2:3971671/1‑93 (MQ=255)
                                                                  ttCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGatat                       >  1:6083336/1‑93 (MQ=255)
                                                                  ttCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGatat                       <  2:2116269/93‑1 (MQ=255)
                                                                    cATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATgg                     <  1:4987087/93‑1 (MQ=255)
                                                                     aTCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGc                    >  1:3045165/1‑93 (MQ=255)
                                                                     aTCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGc                    >  1:50354/1‑93 (MQ=255)
                                                                      tCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCa                   <  2:5126517/93‑1 (MQ=255)
                                                                       cGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCAt                  >  1:1423645/1‑93 (MQ=255)
                                                                        ggTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCAtt                 <  1:4120238/93‑1 (MQ=255)
                                                                          tGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTTCCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTaa               >  1:4418172/1‑93 (MQ=255)
                                                                          tGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTaa               <  1:3773794/93‑1 (MQ=255)
                                                                          tGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTaa               <  2:1425518/93‑1 (MQ=255)
                                                                           gATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAAc              >  2:799015/1‑93 (MQ=255)
                                                                            aTCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAAcc             >  2:5461303/1‑93 (MQ=255)
                                                                             tctcCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAAccc            >  1:5876798/1‑93 (MQ=255)
                                                                              ctcCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCa           >  2:3543723/1‑93 (MQ=255)
                                                                               tcCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAg          >  2:5318906/1‑93 (MQ=255)
                                                                                cccGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAgg         >  2:555060/1‑93 (MQ=255)
                                                                                  cGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAgggg       >  1:2806387/1‑92 (MQ=255)
                                                                                   gTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGgtg      <  2:214440/93‑1 (MQ=255)
                                                                                   gTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGgtg      >  2:2943192/1‑93 (MQ=255)
                                                                                   gTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGgtg      >  2:6185727/1‑93 (MQ=255)
                                                                                   gTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGgtg      >  2:4631918/1‑93 (MQ=255)
                                                                                    tCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGgtgt     >  2:1911849/1‑93 (MQ=255)
                                                                                          |                                                                                         
GGGTCAGCGAAACGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGACATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGGTGTACC  >  NC_000913/3930943‑3931122

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGTGGGTCAGCGAAACGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGACATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGGTGTACCTTCT  >  NC_000913/3930940‑3931126
                                                                                             |                                                                                             
TGTGGGTCAGCGAAACGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGG                                                                                               >  SRR4302534.4901411/1‑94 (MQ=60)
   GGGTCAGCGAAACGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCAT                                                                                            <  SRR4302534.3277271/94‑1 (MQ=60)
      TCAGCGAAACGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACC                                                                                         <  SRR4302534.1751604/94‑1 (MQ=60)
       CAGCGAAACGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCG                                                                                        >  SRR4302534.6461862/1‑94 (MQ=60)
        AGCGAAACGTTTCGCTGATGGAGAAAAAACTGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGA                                                                                       >  SRR4302534.4584451/1‑94 (MQ=60)
        AGCGAAACGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGA                                                                                       >  SRR4302534.5166267/1‑94 (MQ=60)
          CGAAACGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATA                                                                                     >  SRR4302534.964936/1‑94 (MQ=60)
          CGAAACGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATA                                                                                     >  SRR4302534.1959604/1‑94 (MQ=60)
           GAAACGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATAC                                                                                    >  SRR4302534.1654373/1‑94 (MQ=60)
           GAAACGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATAC                                                                                    <  SRR4302534.2916919/94‑1 (MQ=60)
           GAAACGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATAC                                                                                    >  SRR4302534.1846754/1‑94 (MQ=60)
             AACGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGC                                                                                  >  SRR4302534.2677478/1‑94 (MQ=60)
             AACGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCCGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGC                                                                                  >  SRR4302534.3236126/1‑94 (MQ=60)
              ACGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCT                                                                                 >  SRR4302534.4957053/1‑94 (MQ=60)
               CGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTG                                                                                <  SRR4302534.5707517/94‑1 (MQ=60)
               CGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTG                                                                                <  SRR4302534.1382015/94‑1 (MQ=60)
                GTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGG                                                                               >  SRR4302534.5778497/1‑94 (MQ=60)
                GTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGG                                                                               >  SRR4302534.677855/1‑94 (MQ=60)
                 TTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGT                                                                              <  SRR4302534.3518247/94‑1 (MQ=60)
                   TCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGG                                                                            >  SRR4302534.35013/1‑94 (MQ=60)
                     GCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTG                                                                          >  SRR4302534.6398072/1‑94 (MQ=60)
                      CTGATGGAGAAAAAAATGAAAAAAGTCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGT                                                                         <  SRR4302534.3583300/94‑1 (MQ=60)
                      CTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGT                                                                         >  SRR4302534.1540199/1‑94 (MQ=60)
                        GATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGT                                                                       <  SRR4302534.4325872/94‑1 (MQ=60)
                        GATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGT                                                                       >  SRR4302534.3457900/1‑94 (MQ=60)
                         ATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGGATACCTATACGCTTGTGGTGTGTG                                                                      >  SRR4302534.2949019/1‑94 (MQ=60)
                         ATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTG                                                                      <  SRR4302534.2102307/94‑1 (MQ=60)
                          TGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGA                                                                     >  SRR4302534.100836/1‑94 (MQ=60)
                           TGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGAT                                                                    >  SRR4302534.5149657/1‑94 (MQ=60)
                            GAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATG                                                                   <  SRR4302534.60944/94‑1 (MQ=60)
                             AGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGC                                                                  >  SRR4302534.2858619/1‑94 (MQ=60)
                              GAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCT                                                                 <  SRR4302534.6367988/94‑1 (MQ=60)
                               AAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTG                                                                >  SRR4302534.3649328/1‑94 (MQ=60)
                               AAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTG                                                                >  SRR4302534.5735364/1‑94 (MQ=60)
                                AAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGG                                                               >  SRR4302534.3969818/1‑94 (MQ=60)
                                  AAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTT                                                             >  SRR4302534.5211768/1‑94 (MQ=60)
                                   AAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTT                                                            >  SRR4302534.5396223/1‑94 (MQ=60)
                                    AATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTA                                                           >  SRR4302534.1730317/1‑94 (MQ=60)
                                    AATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTA                                                           >  SRR4302534.5097901/1‑94 (MQ=60)
                                     ATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTAC                                                          <  SRR4302534.2339898/94‑1 (MQ=60)
                                     ATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTCGAGGAGTGTGCTGCTGGTTTAC                                                          >  SRR4302534.2850153/1‑94 (MQ=60)
                                      TGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACC                                                         <  SRR4302534.2961928/94‑1 (MQ=60)
                                      TGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACC                                                         >  SRR4302534.3513242/1‑94 (MQ=60)
                                      TGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACC                                                         >  SRR4302534.5335000/1‑94 (MQ=60)
                                      TGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACC                                                         >  SRR4302534.4850902/1‑94 (MQ=60)
                                        AAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCA                                                       >  SRR4302534.4143950/1‑94 (MQ=60)
                                        AAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCA                                                       <  SRR4302534.3853617/94‑1 (MQ=60)
                                        AAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCA                                                       >  SRR4302534.3190573/1‑94 (MQ=60)
                                         AAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCAT                                                      >  SRR4302534.5566882/1‑94 (MQ=60)
                                          AAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATC                                                     <  SRR4302534.5085543/94‑1 (MQ=60)
                                          AAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATC                                                     <  SRR4302534.1339629/94‑1 (MQ=60)
                                           AAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCC                                                    >  SRR4302534.2321106/1‑94 (MQ=60)
                                            AAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCC                                                   >  SRR4302534.1063419/1‑94 (MQ=60)
                                            AAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCC                                                   >  SRR4302534.4498721/1‑94 (MQ=60)
                                            AAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCC                                                   >  SRR4302534.1266895/1‑94 (MQ=60)
                                                 ACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAA                                              >  SRR4302534.4237308/1‑94 (MQ=60)
                                                 ACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAA                                              >  SRR4302534.3231432/1‑94 (MQ=60)
                                                  CCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAG                                             >  SRR4302534.1992502/1‑94 (MQ=60)
                                                   CGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGT                                            >  SRR4302534.5194721/1‑94 (MQ=60)
                                                   CGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGCGTGGGATGCTGGTTTACCCATCCCCAAtact                                            >  SRR4302534.785782/1‑90 (MQ=60)
                                                    GTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTA                                           >  SRR4302534.3004818/1‑94 (MQ=60)
                                                    GTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTA                                           >  SRR4302534.5150230/1‑94 (MQ=60)
                                                     TTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTAC                                          >  SRR4302534.5939486/1‑94 (MQ=60)
                                                     TTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTAC                                          >  SRR4302534.4774968/1‑94 (MQ=60)
                                                     TTCTTAATTCTGAGATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTAC                                          >  SRR4302534.5290633/1‑94 (MQ=60)
                                                       CTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAA                                        >  SRR4302534.5067580/1‑94 (MQ=60)
                                                       CTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAA                                        <  SRR4302534.3816173/94‑1 (MQ=60)
                                                        TTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAAC                                       >  SRR4302534.2421970/1‑94 (MQ=60)
                                                        TTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAAC                                       >  SRR4302534.227705/1‑94 (MQ=60)
                                                        TTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAAC                                       >  SRR4302534.1486391/1‑94 (MQ=60)
                                                         TAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACG                                      <  SRR4302534.475982/94‑1 (MQ=60)
                                                          AATTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTGCCCATCCCCAAAAGTACAACGC                                     <  SRR4302534.3493116/94‑1 (MQ=60)
                                                           ATTCTGATATTTCATCGGTGATCGCCCGTCTGGGTCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCG                                    <  SRR4302534.3342454/94‑1 (MQ=60)
                                                            TTCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGT                                   <  SRR4302534.6382982/94‑1 (MQ=60)
                                                             TCTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTA                                  <  SRR4302534.4336406/94‑1 (MQ=60)
                                                              CTGATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTAT                                 <  SRR4302534.3377714/94‑1 (MQ=60)
                                                                GATATTTCATCGGTGCTCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCG                               <  SRR4302534.6652128/94‑1 (MQ=60)
                                                                 ATATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGA                              >  SRR4302534.2676018/1‑94 (MQ=60)
                                                                  TATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGAT                             >  SRR4302534.150674/1‑94 (MQ=60)
                                                                  TATTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGAT                             >  SRR4302534.3296971/1‑94 (MQ=60)
                                                                    TTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATAT                           <  SRR4302534.4978948/94‑1 (MQ=60)
                                                                    TTTCATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATAT                           >  SRR4302534.6248756/1‑94 (MQ=60)
                                                                       CATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGC                        >  SRR4302534.3125035/1‑94 (MQ=60)
                                                                       CATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGC                        >  SRR4302534.51700/1‑94 (MQ=60)
                                                                       CATCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGC                        <  SRR4302534.5122029/94‑1 (MQ=60)
                                                                         TCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCAT                      >  SRR4302534.1461098/1‑94 (MQ=60)
                                                                         TCGGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCAT                      <  SRR4302534.3446132/94‑1 (MQ=60)
                                                                          CGGTGATCTCCCGTCTGGGGCATACCGATACGCCGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATT                     >  SRR4302534.5265597/1‑94 (MQ=60)
                                                                           GGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTA                    <  SRR4302534.4231116/94‑1 (MQ=60)
                                                                           GGTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTA                    >  SRR4302534.1099226/1‑94 (MQ=60)
                                                                            GTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTTCCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAA                   >  SRR4302534.4537454/1‑94 (MQ=60)
                                                                            GTGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAA                   >  SRR4302534.6274296/1‑94 (MQ=60)
                                                                             TGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAAC                  >  SRR4302534.1911532/1‑94 (MQ=60)
                                                                             TGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAAC                  <  SRR4302534.1435122/94‑1 (MQ=60)
                                                                             TGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAAC                  >  SRR4302534.846994/1‑94 (MQ=60)
                                                                             TGATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAAC                  <  SRR4302534.3875121/94‑1 (MQ=60)
                                                                              GATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACC                 >  SRR4302534.2206068/1‑94 (MQ=60)
                                                                               ATCTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCC                >  SRR4302534.6036352/1‑94 (MQ=60)
                                                                                TCTCCCGTCTGGGGCATACCGATACTCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCA               <  SRR4302534.1646971/94‑1 (MQ=60)
                                                                                 CTCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAG              >  SRR4302534.6031427/1‑94 (MQ=60)
                                                                                  TCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGG             <  SRR4302534.1674096/94‑1 (MQ=60)
                                                                                  TCCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGG             >  SRR4302534.5199967/1‑94 (MQ=60)
                                                                                   CCCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGG            <  SRR4302534.3967399/94‑1 (MQ=60)
                                                                                    CCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGGT           <  SRR4302534.5468440/94‑1 (MQ=60)
                                                                                    CCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGGT           <  SRR4302534.6640339/94‑1 (MQ=60)
                                                                                    CCGTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGGG           >  SRR4302534.2880194/1‑94 (MQ=60)
                                                                                      GTCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGGTGT         <  SRR4302534.5783979/94‑1 (MQ=60)
                                                                                       TCTGGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGGTGTA        <  SRR4302534.5012339/94‑1 (MQ=60)
                                                                                          GGGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGGTGTACCT     >  SRR4302534.4900232/1‑94 (MQ=60)
                                                                                           GGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGGTGTACCTT    <  SRR4302534.4228757/94‑1 (MQ=60)
                                                                                           GGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGGTGTACCTT    <  SRR4302534.1636511/94‑1 (MQ=60)
                                                                                           GGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGGTGTACCTT    <  SRR4302534.1835956/94‑1 (MQ=60)
                                                                                           GGGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGGTGTACCTT    >  SRR4302534.1948350/1‑94 (MQ=60)
                                                                                            GGCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGGTGTACCTTC   >  SRR4302534.2266296/1‑94 (MQ=60)
                                                                                             GCATACCGATACGCTGGTGTTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGGTGTACCTTCT  <  SRR4302534.1596580/94‑1 (MQ=60)
                                                                                             GCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGGTGTACCTTCT  <  SRR4302534.3578929/94‑1 (MQ=60)
                                                                                             GCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGGTGTACCTTCT  <  SRR4302534.4277018/94‑1 (MQ=60)
                                                                                             GCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGGTGTACCTTCT  <  SRR4302534.1234789/94‑1 (MQ=60)
                                                                                             GCATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGGTGTACCTTCT  <  SRR4302534.6591489/94‑1 (MQ=60)
                                                                                             |                                                                                             
TGTGGGTCAGCGAAACGTTTCGCTGATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGACATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGGTGTACCTTCT  >  NC_000913/3930940‑3931126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑