Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,947,801 |
A→G |
intergenic (‑179/‑144) |
yifB ← / → ilvL |
putative 2‑component regulator/ilvGEDA operon leader peptide |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,947,801 | 0 | A | G | 100.0%
| 253.6
/ NA
| 74 | intergenic (‑179/‑144) | yifB/ilvL | putative 2‑component regulator/ilvGEDA operon leader peptide |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (28/46); total (28/46) |
GTGGAATGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAATCGGCCAAAAAATATCTTGTACTATT > NC_000913/3947711‑3947885
|
gTGGAATGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTcactcgct < 1:2752363/93‑1 (MQ=255)
tGGAATGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCta < 1:3695699/93‑1 (MQ=255)
ggAATGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCtat < 1:741731/93‑1 (MQ=255)
ggAATGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCtat > 2:4004253/1‑93 (MQ=255)
ggAATGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCtat < 1:5441762/93‑1 (MQ=255)
ggAATGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCtat > 2:4414758/1‑93 (MQ=255)
ggAATGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCtat < 2:2413051/93‑1 (MQ=255)
ggAATGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTAAATTTTTTTCTCTCGCtat < 1:6321899/93‑1 (MQ=255)
ggAATGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTAAATTTTTTTCACTCGCtat < 1:6313329/93‑1 (MQ=255)
ggAATGATGCTCGCAAAAATGCAGCGAACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCCCTCGCtat < 2:4080532/93‑1 (MQ=255)
gAATGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCtatt < 2:317457/93‑1 (MQ=255)
aaTGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCtattt > 2:5355623/1‑93 (MQ=255)
atgatgCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCtatttt > 2:5634494/1‑93 (MQ=255)
tgatgCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCtatttta < 1:2519047/93‑1 (MQ=255)
tgatgCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCtatttta > 2:3189810/1‑93 (MQ=255)
agatgCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCtatttta < 2:5288380/92‑1 (MQ=255)
gatgCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCtattttat > 2:5881508/1‑93 (MQ=255)
atgCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCtattttatt < 2:1461630/93‑1 (MQ=255)
atgCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCtattttatt < 2:3854203/93‑1 (MQ=255)
atgCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCtattttatt < 2:427987/93‑1 (MQ=255)
atgCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCtattttatt < 1:3404817/93‑1 (MQ=255)
atgCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCtattttatt < 2:5931434/93‑1 (MQ=255)
atgCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCtattttatt > 2:594218/1‑93 (MQ=255)
tgCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCtattttattt < 2:6051188/93‑1 (MQ=255)
gCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTattttatttt < 1:5295780/93‑1 (MQ=255)
gCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTattttatttt < 2:5558371/93‑1 (MQ=255)
cTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTAttttt < 1:4060361/93‑1 (MQ=255)
tCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTa > 2:3400356/1‑93 (MQ=255)
tCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTa < 2:4216624/93‑1 (MQ=255)
tCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTa < 1:2372858/93‑1 (MQ=255)
aaaaaTGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTaaaaa > 1:1243658/1‑93 (MQ=255)
aaaaTGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTaaaaaa < 1:959735/93‑1 (MQ=255)
aaaaTGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTaaaaaa > 2:956070/1‑93 (MQ=255)
aaaTGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAaac < 1:434222/93‑1 (MQ=255)
aaaTGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAaac < 2:3730042/93‑1 (MQ=255)
aaaTGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAaac > 2:6423048/1‑93 (MQ=255)
aaTGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATTCTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAaaca < 2:4215428/93‑1 (MQ=255)
aaTGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTACTCGCTATTTTATTTTTTAAAaaca > 1:5700187/1‑93 (MQ=255)
aaTGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAaaca < 1:3604212/93‑1 (MQ=255)
aTGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAaacaa < 1:5777784/93‑1 (MQ=255)
gCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAacaaca > 2:6117957/1‑93 (MQ=255)
cAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAAcaacaa < 1:739101/93‑1 (MQ=255)
aGCGGACAAAGGATGAACTACGAGGAAGTGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAAt < 1:519242/93‑1 (MQ=255)
aGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAAt < 2:127747/93‑1 (MQ=255)
gCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAAtt < 2:5579175/93‑1 (MQ=255)
gCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAAtt > 2:1401513/1‑93 (MQ=255)
gCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAAtt < 1:4173377/93‑1 (MQ=255)
gACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTtat < 1:1753402/93‑1 (MQ=255)
aCAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAATCAACAATTtata > 1:218726/1‑93 (MQ=255)
aCAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTtata > 2:5255738/1‑93 (MQ=255)
cAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTatat < 1:1084/93‑1 (MQ=255)
aaaGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATAtt > 1:6355842/1‑93 (MQ=255)
aaGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTg < 1:4001914/93‑1 (MQ=255)
aaGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTg > 1:3767671/1‑93 (MQ=255)
gATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGaaa > 2:2598293/1‑93 (MQ=255)
gATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGaaa > 1:4778657/1‑93 (MQ=255)
gAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACg > 2:2862654/1‑93 (MQ=255)
aaGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGcatc < 1:3206593/93‑1 (MQ=255)
aaGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGcatc < 1:722933/93‑1 (MQ=255)
gggAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGcatcat > 2:578200/1‑93 (MQ=255)
ggAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATa < 2:4741420/93‑1 (MQ=255)
gAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATaa > 2:6432160/1‑93 (MQ=255)
gAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATaa < 2:109582/93‑1 (MQ=255)
acaacaTTCATACTGAAATTGAATTTTTTTCACTCGCTCTTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATaaaa > 2:6407817/1‑93 (MQ=255)
caacaTTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATaaaaa < 1:2833528/93‑1 (MQ=255)
aacaTTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAAt > 2:5804200/1‑93 (MQ=255)
tCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAATCGGcc < 2:2343149/93‑1 (MQ=255)
gAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAATCGGCCAAAAAat > 1:3510421/1‑93 (MQ=255)
ttGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAATCGGCCAAAAAATATCt < 1:3831113/93‑1 (MQ=255)
tGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAATCGGCCAAAAAATATCtt < 2:960165/93‑1 (MQ=255)
aaTTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAATCGGCCAAAAAATATCTTGt < 1:3614501/93‑1 (MQ=255)
aaTTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAATCGGCCAAAAAATATCTTGt > 1:4685761/1‑93 (MQ=255)
tttttttCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAATCGGCCAAAAAATATCTTGTAc < 2:3787471/93‑1 (MQ=255)
ttttCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAATCGGCCAAAAAATATCTTGTACTAt > 2:4699907/1‑93 (MQ=255)
tttCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAATCGGCCAAAAAATATCTTGTACTAtt < 2:974326/93‑1 (MQ=255)
|
GTGGAATGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAATCGGCCAAAAAATATCTTGTACTATT > NC_000913/3947711‑3947885
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCGGTGGAATGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAATCGGCCAAAAAATATCTTGTACTATTTACAAAACC > NC_000913/3947708‑3947894
|
GCGGTGGAATGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCG < SRR4302534.1567891/94‑1 (MQ=60)
GCGGTGGAATGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCG < SRR4302534.2977303/94‑1 (MQ=60)
CGGTGGAATGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGC < SRR4302534.4297414/94‑1 (MQ=60)
GTGGAATGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTA < SRR4302534.2824854/94‑1 (MQ=60)
TGGAATGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTAT < SRR4302534.3795062/94‑1 (MQ=60)
GGAATGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATT < SRR4302534.760105/94‑1 (MQ=60)
GGAATGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATT < SRR4302534.5588349/94‑1 (MQ=60)
GGAATGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTAAATTTTTTTCTCTCGCTATT < SRR4302534.6492736/94‑1 (MQ=60)
GGAATGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTAAATTTTTTTCACTCGCTATT < SRR4302534.6483990/94‑1 (MQ=60)
TGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTAT < SRR4302534.2585926/94‑1 (MQ=60)
ATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTT < SRR4302534.3496258/94‑1 (MQ=60)
GCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTT < SRR4302534.5438709/94‑1 (MQ=60)
CTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTA < SRR4302534.4169275/94‑1 (MQ=60)
TCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAA < SRR4302534.2435863/94‑1 (MQ=60)
CAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAA > SRR4302534.1276437/1‑94 (MQ=60)
AAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAAC < SRR4302534.984184/94‑1 (MQ=60)
AAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTACTCGCTATTTTATTTTTTAAAAACA > SRR4302534.5854600/1‑94 (MQ=60)
AAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACA < SRR4302534.445293/94‑1 (MQ=60)
AATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAA < SRR4302534.3701127/94‑1 (MQ=60)
ATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAAC < SRR4302534.5934510/94‑1 (MQ=60)
CAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAAT < SRR4302534.757398/94‑1 (MQ=60)
AGCGGACAAAGGATGAACTACGAGGAAGTGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATT < SRR4302534.532152/94‑1 (MQ=60)
GCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTT < SRR4302534.4286107/94‑1 (MQ=60)
GACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAATCAACAATTTATA > SRR4302534.224460/1‑94 (MQ=60)
GACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATA < SRR4302534.1798933/94‑1 (MQ=60)
CAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATT < SRR4302534.1107/94‑1 (MQ=60)
CAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATT > SRR4302534.6527494/1‑94 (MQ=60)
AAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTG > SRR4302534.3868821/1‑94 (MQ=60)
AAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGA < SRR4302534.4109060/94‑1 (MQ=60)
GGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGAAA > SRR4302534.4908426/1‑94 (MQ=60)
AAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCA < SRR4302534.3291632/94‑1 (MQ=60)
AAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCA < SRR4302534.740777/94‑1 (MQ=60)
CAACATTCATACTGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAAT < SRR4302534.2907980/94‑1 (MQ=60)
TGAAATTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAATCGGCCAAAAAAT > SRR4302534.3604857/1‑94 (MQ=60)
TTGAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAATCGGCCAAAAAATATCTT < SRR4302534.3934007/94‑1 (MQ=60)
GAATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAATCGGCCAAAAAATATCTTGT > SRR4302534.4812966/1‑94 (MQ=60)
AATTTTTTTCACTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAATCGGCCAAAAAATATCTTGTA < SRR4302534.3711692/94‑1 (MQ=60)
CTCGCTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAATCGGCCAAAAAATATCTTGTACTATTTACAAA > SRR4302534.170443/1‑94 (MQ=60)
GCTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAATCGGCCAAAAAATATCTTGTACTATTTACAAAACC < SRR4302534.4486192/94‑1 (MQ=60)
|
GCGGTGGAATGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAATCGGCCAAAAAATATCTTGTACTATTTACAAAACC > NC_000913/3947708‑3947894
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
