Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,967,593	A→G	K317K (AAA→AAG)	wzzE →	putative transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,967,593	0	A	G	100.0%	891.3 / NA	253	K317K (AAA→AAG)	wzzE	putative transport protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (148/105); total (148/105)

Only 100 of 265 total aligned reads displayed.

GGCCATGTTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTG  >  NC_000913/3967503‑3967682

ggCCATGTTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGcg                                                                                         >  1:1613612/1‑93 (MQ=255)

  ccATGTTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGcgcg                                                                                       >  1:3062729/1‑93 (MQ=255)

  ccATGTTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGcgcg                                                                                       >  2:2151527/1‑93 (MQ=255)

   cATGTTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGa                                                                                      <  1:376573/93‑1 (MQ=255)

    aTGTTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGAt                                                                                     >  1:3477576/1‑93 (MQ=255)

    aTGTTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGAt                                                                                     <  1:3859875/93‑1 (MQ=255)

       ttAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGc                                                                                  <  2:4634406/93‑1 (MQ=255)

       ttAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGc                                                                                  <  2:326727/93‑1 (MQ=255)

          aaCACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCa                                                                               >  2:6087605/1‑93 (MQ=255)

          aaCACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCa                                                                               >  2:3034378/1‑93 (MQ=255)

           acacCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCAc                                                                              <  2:6449733/93‑1 (MQ=255)

           acacCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCAc                                                                              >  1:2923164/1‑93 (MQ=255)

           acacCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCAc                                                                              >  1:3322150/1‑93 (MQ=255)

            cacCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCAcg                                                                             >  2:5982279/1‑93 (MQ=255)

            cacCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCAcg                                                                             >  2:2432014/1‑93 (MQ=255)

            cacCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCAcg                                                                             >  2:353696/1‑93 (MQ=255)

             acCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCAcgt                                                                            <  1:1042676/93‑1 (MQ=255)

             acCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCAcgt                                                                            <  1:4212431/93‑1 (MQ=255)

             acCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCAcgt                                                                            <  1:1898691/93‑1 (MQ=255)

              cccTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCAcgtc                                                                           <  2:4757059/93‑1 (MQ=255)

               ccTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCAcgtcg                                                                          >  2:4893068/1‑93 (MQ=255)

                 tGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCAcgtcgtc                                                                        >  1:809525/1‑92 (MQ=255)

                 tGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTg                                                                        >  1:5089142/1‑93 (MQ=255)

                  gAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGc                                                                       >  2:2579438/1‑93 (MQ=255)

                  gAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGc                                                                       >  1:1986741/1‑93 (MQ=255)

                   aaTGTTGGGCCAACCCTGGATCCGCGTTTGCAGACCTATCGCTATTTGCGTACGCCGGAAGATCCGGTAAAGCGCGATAGCCCACGTCGTGcc                                                                      <  1:79535/93‑1 (MQ=255)

                    aTGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCt                                                                     >  2:4954554/1‑93 (MQ=255)

                    aTGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCt                                                                     <  1:446296/93‑1 (MQ=255)

                       ttGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTcc                                                                  <  1:5387676/93‑1 (MQ=255)

                       ttGATCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTcc                                                                  <  2:1866113/93‑1 (MQ=255)

                        tGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCt                                                                 <  2:4528359/93‑1 (MQ=255)

                        tGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCt                                                                 <  2:3633188/93‑1 (MQ=255)

                        tGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCt                                                                 <  1:1513320/93‑1 (MQ=255)

                        tGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCt                                                                 <  1:1821944/93‑1 (MQ=255)

                         ggTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCtg                                                                >  1:5172535/1‑93 (MQ=255)

                           tCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCtgat                                                              <  1:4109873/93‑1 (MQ=255)

                           tCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCtgat                                                              <  2:849537/93‑1 (MQ=255)

                            ccAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCtgatg                                                             <  2:2111811/93‑1 (MQ=255)

                              aaCCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTgatgat                                                           >  2:3775740/1‑93 (MQ=255)

                              aaCCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTgatgat                                                           >  2:2796366/1‑93 (MQ=255)

                              aaCCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTgatgat                                                           >  2:1641709/1‑93 (MQ=255)

                              aaCCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTgatgat                                                           >  2:5619329/1‑93 (MQ=255)

                               aCCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGCTGAtt                                                          >  1:5824271/1‑93 (MQ=255)

                               aCCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGGtt                                                          >  2:2527325/1‑93 (MQ=255)

                               aCCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGAtt                                                          >  2:3011156/1‑93 (MQ=255)

                                  cTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTAtg                                                       <  1:236115/93‑1 (MQ=255)

                                  cTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTAtg                                                       >  2:659015/1‑93 (MQ=255)

                                  cTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTAtg                                                       >  1:2444995/1‑93 (MQ=255)

                                   tGGATCCGCGTTTTCAGACCTATCGCTATTTGGTTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTAtgt                                                      <  1:4336319/93‑1 (MQ=255)

                                   tGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTAtgt                                                      >  2:1183062/1‑93 (MQ=255)

                                   tGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTAtgt                                                      <  2:5101988/93‑1 (MQ=255)

                                    ggATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTAtgtg                                                     >  2:6381050/1‑93 (MQ=255)

                                    ggATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTAtgtg                                                     >  2:517723/1‑93 (MQ=255)

                                     gATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTgg                                                    <  2:5527694/93‑1 (MQ=255)

                                     gATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTgg                                                    <  1:2340440/93‑1 (MQ=255)

                                     gATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTgg                                                    <  1:4749588/93‑1 (MQ=255)

                                     gATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTgg                                                    >  2:6459092/1‑93 (MQ=255)

                                       tCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTgggg                                                  >  1:6011360/1‑93 (MQ=255)

                                       tCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTgggg                                                  >  2:4172708/1‑93 (MQ=255)

                                        ccGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGc                                                 <  2:4777415/93‑1 (MQ=255)

                                        ccGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGc                                                 >  1:626601/1‑93 (MQ=255)

                                         cgcgTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCa                                                >  2:3427647/1‑93 (MQ=255)

                                           cgTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCAtt                                              <  2:3957650/93‑1 (MQ=255)

                                            gTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTg                                             >  1:4016862/1‑93 (MQ=255)

                                            gTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTg                                             <  1:2085813/93‑1 (MQ=255)

                                             ttttGAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGt                                            >  2:5761075/1‑93 (MQ=255)

                                              tttCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTc                                           <  1:5726002/93‑1 (MQ=255)

                                                tCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCgg                                         <  1:4740101/93‑1 (MQ=255)

                                                 cAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCggg                                        <  2:2347896/93‑1 (MQ=255)

                                                 cAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCggg                                        >  2:32071/1‑93 (MQ=255)

                                                  aGACCTATCGTTTTTTGCGTACGGCGGAAGAACCGGTAAAGCGCGATACCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCgggg                                       <  1:6414670/93‑1 (MQ=255)

                                                    aCCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCgggggg                                     >  1:2772573/1‑93 (MQ=255)

                                                    aCCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCgggggg                                     >  1:3697059/1‑93 (MQ=255)

                                                     ccTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGc                                    <  1:3610390/93‑1 (MQ=255)

                                                      cTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCt                                   >  2:4327157/1‑93 (MQ=255)

                                                       tATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTg                                  <  2:2761379/93‑1 (MQ=255)

                                                        aTCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGa                                 >  1:3160319/1‑93 (MQ=255)

                                                         tCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGAt                                >  2:2236376/1‑93 (MQ=255)

                                                         tCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGAt                                <  1:4583181/93‑1 (MQ=255)

                                                           gCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCg                              <  1:1219461/93‑1 (MQ=255)

                                                            cTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCgg                             <  2:52326/93‑1 (MQ=255)

                                                            cTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCgg                             >  1:5534197/1‑93 (MQ=255)

                                                              aTTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCgggg                           >  2:2450753/1‑93 (MQ=255)

                                                              aTTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCgggg                           >  2:5467439/1‑93 (MQ=255)

                                                               tttGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGc                          >  1:4261889/1‑93 (MQ=255)

                                                                  gCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGCTGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTgg                       <  1:5244966/93‑1 (MQ=255)

                                                                  gCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTgg                       <  2:5037024/93‑1 (MQ=255)

                                                                    gTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGgtg                     >  1:2510207/1‑93 (MQ=255)

                                                                     tACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGgtgt                    >  1:907872/1‑93 (MQ=255)

                                                                       cGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCg                  <  2:1762812/93‑1 (MQ=255)

                                                                       cGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCg                  >  1:3832973/1‑93 (MQ=255)

                                                                          cGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCGCAt               >  2:2659580/1‑93 (MQ=255)

                                                                           ggAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCGCAtt              >  1:2476257/1‑93 (MQ=255)

                                                                            gaagaaCCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCGCATTa             >  2:1121975/1‑93 (MQ=255)

                                                                             aagaaCCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCGCATTaa            <  2:5852415/93‑1 (MQ=255)

                                                                                aaCCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCGCATTAAccc         >  2:4042876/1‑93 (MQ=255)

                                                                                    ggTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGCTCGGGGCTGGGGGCGCGTTAACccgccg     >  2:3716896/1‑93 (MQ=255)

                                                                                    ggTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCGCATTAACccgccg     >  1:6120664/1‑93 (MQ=255)

                                                                                     gTAAACCGCGAGACCCCACGTCGTCCCTTCCTGATGATTATGTGGGGAATTGTCGGGGGCCTGATCGGGCCTGGTGTCGCATTACCCCGCCGt    <  2:1418250/93‑1 (MQ=255)

                                                                                      tAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCGCATTAACCCGCCGtt   >  1:6149095/1‑93 (MQ=255)

GGCCATGTTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTG  >  NC_000913/3967503‑3967682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCGGGCCATGTTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCG  >  NC_000913/3967500‑3967686

TCGGGCCATGTTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAG                                                                                               <  SRR4302534.3521776/94‑1 (MQ=60)

TCGGGCCATGTTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAG                                                                                               <  SRR4302534.4741943/94‑1 (MQ=60)

TCGGGCCATGTTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAG                                                                                               <  SRR4302534.1749170/94‑1 (MQ=60)

  GGGCCATGTTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCG                                                                                             >  SRR4302534.1655726/1‑94 (MQ=60)

    GCCATGTTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCG                                                                                           >  SRR4302534.3143107/1‑94 (MQ=60)

     CCATGTTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGA                                                                                          >  SRR4302534.5635699/1‑94 (MQ=60)

      CATGTTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGAT                                                                                         >  SRR4302534.3571052/1‑94 (MQ=60)

      CATGTTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGAT                                                                                         <  SRR4302534.386197/94‑1 (MQ=60)

       ATGTTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATA                                                                                        >  SRR4302534.2066008/1‑94 (MQ=60)

       ATGTTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATA                                                                                        <  SRR4302534.3963508/94‑1 (MQ=60)

          TTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCC                                                                                     >  SRR4302534.4201142/1‑94 (MQ=60)

          TTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCC                                                                                     >  SRR4302534.3925541/1‑94 (MQ=60)

          TTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCC                                                                                     >  SRR4302534.2361028/1‑94 (MQ=60)

            AAACACCCTGACTGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAAACGGTAAAGCGCGATAGCACA                                                                                   >  SRR4302534.2809044/1‑94 (MQ=60)

             AACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCAC                                                                                  >  SRR4302534.2999884/1‑94 (MQ=60)

             AACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCAC                                                                                  >  SRR4302534.3410990/1‑94 (MQ=60)

             AACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCAC                                                                                  >  SRR4302534.4302769/1‑94 (MQ=60)

             AACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCAC                                                                                  >  SRR4302534.5830157/1‑94 (MQ=60)

              ACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACG                                                                                 >  SRR4302534.4523234/1‑94 (MQ=60)

               CACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGT                                                                                >  SRR4302534.6160834/1‑94 (MQ=60)

               CACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGT                                                                                >  SRR4302534.4372996/1‑94 (MQ=60)

                ACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTC                                                                               <  SRR4302534.1069598/94‑1 (MQ=60)

                ACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTC                                                                               >  SRR4302534.1441124/1‑94 (MQ=60)

                ACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTC                                                                               <  SRR4302534.4326053/94‑1 (MQ=60)

                ACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTC                                                                               >  SRR4302534.5979112/1‑94 (MQ=60)

                ACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTC                                                                               <  SRR4302534.1948206/94‑1 (MQ=60)

                 CCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGACG                                                                              <  SRR4302534.6541374/94‑1 (MQ=60)

                  CCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGT                                                                             <  SRR4302534.4942823/94‑1 (MQ=60)

                   CTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGGCCACGTCGTG                                                                            >  SRR4302534.1620923/1‑94 (MQ=60)

                   CTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTG                                                                            <  SRR4302534.563870/94‑1 (MQ=60)

                   CTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTG                                                                            >  SRR4302534.5226501/1‑94 (MQ=60)

                   CTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTC                                                                            >  SRR4302534.829871/1‑94 (MQ=60)

                    TGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGC                                                                           >  SRR4302534.2038763/1‑94 (MQ=60)

                    TGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGC                                                                           >  SRR4302534.3939969/1‑94 (MQ=60)

                      AATGTTGGGCCAACCCTGGATCCGCGTTTGCAGACCTATCGCTATTTGCGTACGCCGGAAGATCCGGTAAAGCGCGATAGCCCACGTCGTGCCT                                                                         <  SRR4302534.81673/94‑1 (MQ=60)

                       ATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTT                                                                        <  SRR4302534.457613/94‑1 (MQ=60)

                       ATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTT                                                                        <  SRR4302534.2536227/94‑1 (MQ=60)

                       ATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTC                                                                        <  SRR4302534.3745460/94‑1 (MQ=60)

                        TGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTC                                                                       >  SRR4302534.5351134/1‑94 (MQ=60)

                         GTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCC                                                                      <  SRR4302534.3316744/94‑1 (MQ=60)

                          TTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCT                                                                     >  SRR4302534.5397870/1‑94 (MQ=60)

                          TTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCT                                                                     <  SRR4302534.5532782/94‑1 (MQ=60)

                           TGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTG                                                                    <  SRR4302534.1869303/94‑1 (MQ=60)

                           TGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTG                                                                    <  SRR4302534.1553100/94‑1 (MQ=60)

                           TGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTG                                                                    <  SRR4302534.4734587/94‑1 (MQ=60)

                           TGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTG                                                                    >  SRR4302534.5311945/1‑94 (MQ=60)

                              TCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATG                                                                 <  SRR4302534.4220423/94‑1 (MQ=60)

                                 AACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGCTGATT                                                              >  SRR4302534.5982359/1‑94 (MQ=60)

                                 AACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATT                                                              >  SRR4302534.2560881/1‑94 (MQ=60)

                                 AACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATT                                                              >  SRR4302534.5985643/1‑94 (MQ=60)

                                 AACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATT                                                              >  SRR4302534.3806190/1‑94 (MQ=60)

                                 AACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGAGT                                                              >  SRR4302534.5254778/1‑94 (MQ=60)

                                    CCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATG                                                           <  SRR4302534.4169394/94‑1 (MQ=60)

                                    CCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATG                                                           >  SRR4302534.2509974/1‑94 (MQ=60)

                                    CCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATG                                                           >  SRR4302534.1072751/1‑94 (MQ=60)

                                     CTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGT                                                          <  SRR4302534.242295/94‑1 (MQ=60)

                                      tacATCCGCGTTGTCAGACCTATCGCTATTTGCGTACGCAAGAAGAACCGGTAAAGCGCGATAGCCCACGTCGGGGCTTCCTGATGATTATGTT                                                         <  SRR4302534.3147038/91‑1 (MQ=60)

                                      TGGATCCGTGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTG                                                         >  SRR4302534.6298825/1‑94 (MQ=60)

                                      TGGATCCGCGTTTTCAGACCTATCGCTATTTGGTTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTG                                                         <  SRR4302534.4453534/94‑1 (MQ=60)

                                      TGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTG                                                         <  SRR4302534.3001287/94‑1 (MQ=60)

                                      TGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTG                                                         >  SRR4302534.757420/1‑94 (MQ=60)

                                      TGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTG                                                         >  SRR4302534.79382/1‑94 (MQ=60)

                                        GATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGG                                                       <  SRR4302534.4878515/94‑1 (MQ=60)

                                        GATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGG                                                       <  SRR4302534.2402553/94‑1 (MQ=60)

                                        GATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGG                                                       <  SRR4302534.1377234/94‑1 (MQ=60)

                                         ATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGG                                                      >  SRR4302534.4673453/1‑94 (MQ=60)

                                         ATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGG                                                      >  SRR4302534.6174691/1‑94 (MQ=60)

                                         ATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGG                                                      <  SRR4302534.406980/94‑1 (MQ=60)

                                          TCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGC                                                     >  SRR4302534.641797/1‑94 (MQ=60)

                                              CGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTG                                                 >  SRR4302534.4124539/1‑94 (MQ=60)

                                              CGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTG                                                 <  SRR4302534.3724120/94‑1 (MQ=60)

                                              CGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTG                                                 >  SRR4302534.4405263/1‑94 (MQ=60)

                                              CGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTG                                                 >  SRR4302534.2652487/1‑94 (MQ=60)

                                               GTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGT                                                >  SRR4302534.3924962/1‑94 (MQ=60)

                                               GTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGT                                                <  SRR4302534.2140472/94‑1 (MQ=60)

                                                ATTTCAGACCTATCGCTATTTGCGAACGCCGGAAGAACCGGTAAAGCGCGATAGCCCGCGACGTGCCTTCCTGATGATTATGTGGGGCATTGTC                                               <  SRR4302534.6168119/94‑1 (MQ=60)

                                                 TTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCG                                              <  SRR4302534.5881145/94‑1 (MQ=60)

                                                   TCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGG                                            >  SRR4302534.6293038/1‑94 (MQ=60)

                                                   TCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGG                                            <  SRR4302534.4868787/94‑1 (MQ=60)

                                                    CAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGG                                           <  SRR4302534.4672283/94‑1 (MQ=60)

                                                     AGACCTATCGTTTTTTGCGTACGGCGGAAGAACCGGTAAAGCGCGATACCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGG                                          <  SRR4302534.6587742/94‑1 (MQ=60)

                                                     AGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGG                                          <  SRR4302534.3230043/94‑1 (MQ=60)

                                                     AGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGG                                          >  SRR4302534.3520650/1‑94 (MQ=60)

                                                      GACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGG                                         <  SRR4302534.19411/94‑1 (MQ=60)

                                                      GACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGG                                         >  SRR4302534.3796453/1‑94 (MQ=60)

                                                      GACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGG                                         >  SRR4302534.2845527/1‑94 (MQ=60)

                                                        CCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCT                                       >  SRR4302534.339089/1‑94 (MQ=60)

                                                        CCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCT                                       >  SRR4302534.4721918/1‑94 (MQ=60)

                                                        CCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCT                                       <  SRR4302534.825833/94‑1 (MQ=60)

                                                        CCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCT                                       <  SRR4302534.3707474/94‑1 (MQ=60)

                                                        CCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCT                                       >  SRR4302534.1808137/1‑94 (MQ=60)

                                                          TATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGA                                     >  SRR4302534.2453416/1‑94 (MQ=60)

                                                          TATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGA                                     >  SRR4302534.210353/1‑94 (MQ=60)

                                                          TATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGA                                     >  SRR4302534.3243589/1‑94 (MQ=60)

                                                           ATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGAT                                    <  SRR4302534.1802477/94‑1 (MQ=60)

                                                           ATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGAT                                    >  SRR4302534.4357524/1‑94 (MQ=60)

                                                            TCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATC                                   >  SRR4302534.2890930/1‑94 (MQ=60)

                                                            TCGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATC                                   <  SRR4302534.4707529/94‑1 (MQ=60)

                                                             CGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCG                                  >  SRR4302534.217468/1‑94 (MQ=60)

                                                             CGCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCG                                  <  SRR4302534.856559/94‑1 (MQ=60)

                                                              GCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGG                                 <  SRR4302534.1251567/94‑1 (MQ=60)

                                                              GCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGG                                 <  SRR4302534.4871795/94‑1 (MQ=60)

                                                              GCTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGG                                 >  SRR4302534.5683578/1‑94 (MQ=60)

                                                               CTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGG                                <  SRR4302534.6496954/94‑1 (MQ=60)

                                                               CTATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGG                                >  SRR4302534.2537189/1‑94 (MQ=60)

                                                                TATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGG                               >  SRR4302534.620268/1‑94 (MQ=60)

                                                                TATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGG                               >  SRR4302534.2968126/1‑94 (MQ=60)

                                                                 ATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGC                              <  SRR4302534.4994292/94‑1 (MQ=60)

                                                                 ATTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGC                              >  SRR4302534.4376999/1‑94 (MQ=60)

                                                                  TTTGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCT                             <  SRR4302534.3207374/94‑1 (MQ=60)

                                                                    TGCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGG                           <  SRR4302534.4114184/94‑1 (MQ=60)

                                                                     GCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGCTGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGT                          <  SRR4302534.5386636/94‑1 (MQ=60)

                                                                     GCGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGT                          <  SRR4302534.1900420/94‑1 (MQ=60)

                                                                      CGTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTG                         >  SRR4302534.2576850/1‑94 (MQ=60)

                                                                       GTACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGT                        >  SRR4302534.930940/1‑94 (MQ=60)

                                                                         ACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCG                      <  SRR4302534.2000417/94‑1 (MQ=60)

                                                                         ACGCCGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCG                      >  SRR4302534.3935909/1‑94 (MQ=60)

                                                                             CGGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCGCATT                  >  SRR4302534.2542060/1‑94 (MQ=60)

                                                                              GGAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCGCATTA                 <  SRR4302534.2463548/94‑1 (MQ=60)

                                                                               GAAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCGCATTAA                >  SRR4302534.5483289/1‑94 (MQ=60)

                                                                                AAGAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCGCATTAAC               >  SRR4302534.2419836/1‑94 (MQ=60)

                                                                                  GAACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCGCATTAACCC             >  SRR4302534.901625/1‑94 (MQ=60)

                                                                                   AACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCGCATTAACCCG            >  SRR4302534.5294941/1‑94 (MQ=60)

                                                                                    ACCGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCGCATTAACCCGC           >  SRR4302534.6426639/1‑94 (MQ=60)

                                                                                    ACCGGTAAAGCGCGATAGCCCACGTCGTACCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCGCATTAACCCGC           >  SRR4302534.4431849/1‑94 (MQ=60)

                                                                                      CGGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCGCATTAACCCGCCG         >  SRR4302534.6287152/1‑94 (MQ=60)

                                                                                       GGTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCGGATTAACCCGCCGT        >  SRR4302534.3579285/1‑94 (MQ=60)

                                                                                        GTAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCGCATTAACCCGCCGTT       >  SRR4302534.6316356/1‑94 (MQ=60)

                                                                                         TAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGaatctatagatcggaagagcgt      >  SRR4302534.3639788/1‑72 (MQ=60)

                                                                                         TAAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTG      <  SRR4302534.5889714/94‑1 (MQ=60)

                                                                                          AAAGCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGC     >  SRR4302534.1967055/1‑94 (MQ=60)

                                                                                             GCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCG  <  SRR4302534.309129/94‑1 (MQ=60)

TCGGGCCATGTTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTGTCGGGGGGCTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCG  >  NC_000913/3967500‑3967686

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`