Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,980,297 |
(C)8→9 |
noncoding (79/87 nt) |
leuT → |
tRNA‑Leu |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,980,289 | 1 | . | C | 96.0%
| 476.5
/ 11.8
| 149 | noncoding (71/87 nt) | leuT | tRNA‑Leu |
| Reads supporting (aligned to +/- strand): ref base . (1/5); new base C (45/98); total (46/103) |
| Fisher's exact test for biased strand distribution p-value = 6.67e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.36e-01 |
Only 100 of 190 total aligned reads displayed.
CATTATTAGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑T‑‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAAC > NC_000913/3980197‑3980376
|
attattAGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑T‑‑c > 1:1991391/1‑93 (MQ=255)
ttattaGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑T‑‑cc < 2:2343851/93‑1 (MQ=255)
tattaGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑T‑‑ccc < 1:4721836/93‑1 (MQ=255)
tattaGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑T‑‑ccc < 1:2709921/93‑1 (MQ=255)
taGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAAG‑T‑‑ccc‑ccc > 1:3671440/1‑93 (MQ=255)
gAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑T‑‑ccc‑ccccc > 2:2044030/1‑93 (MQ=255)
gAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAAG‑T‑‑ccc‑ccccc > 2:3496330/1‑93 (MQ=255)
aaGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑T‑‑ccc‑cccccc < 1:4587606/93‑2 (MQ=255)
aaGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑G‑‑ccc‑cccccc < 2:1792406/93‑2 (MQ=255)
aGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑T‑‑ccc‑cccccct < 2:3596532/93‑3 (MQ=255)
aGTTGTGACAATGCGAAGGTGGCGAAATTGGTAGCCGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑T‑‑ccc‑cccccct < 2:768275/93‑3 (MQ=255)
gTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑T‑‑ccc‑cccccctc > 2:6040593/1‑90 (MQ=255)
gTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑T‑‑ccc‑cccccctc < 2:369150/93‑4 (MQ=255)
gTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑T‑‑ccc‑cccccctc > 2:4948481/1‑90 (MQ=255)
gACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGcacc < 1:103559/93‑1 (MQ=255)
aCAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGcacca < 2:4023954/93‑1 (MQ=16)
cAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGcaccac < 1:4835918/93‑1 (MQ=16)
aTGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGa < 2:3280606/93‑1 (MQ=16)
tGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑c < 2:2717349/93‑1 (MQ=255)
tGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑c < 2:127722/93‑1 (MQ=255)
tGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑c < 1:1455288/93‑1 (MQ=255)
gCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGCCGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑Ct < 2:5295196/93‑1 (MQ=255)
gCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑Ct < 1:4895585/93‑1 (MQ=255)
gCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑Ct > 2:5648186/1‑93 (MQ=255)
gCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑Ct < 2:541183/93‑1 (MQ=255)
gCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑Ct < 1:3103018/93‑1 (MQ=255)
gCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑Ct < 1:2835946/93‑1 (MQ=255)
gCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑Ct > 2:5110536/1‑93 (MQ=255)
gAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑Cttt > 1:305370/1‑93 (MQ=255)
gAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑Cttt < 1:292160/93‑1 (MQ=255)
aaGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTa > 2:6304388/1‑93 (MQ=255)
aaGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTa < 1:3881153/93‑1 (MQ=255)
aaGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTa > 1:5742205/1‑93 (MQ=255)
aGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTaa > 1:2771589/1‑93 (MQ=255)
aGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCCCACCACGA‑CTTTaa > 1:1034729/1‑93 (MQ=255)
aGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAAGTT‑‑CCC‑CCCCCTCTCACCACCA‑CCTTaa > 1:387983/1‑93 (MQ=11)
gTGGCGGAATTGGTAGACGCGCTAGCTTCATGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAg < 1:2497738/93‑1 (MQ=255)
tGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGa < 2:3825348/93‑1 (MQ=255)
ggCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAAG‑T‑‑CCC‑CCCCCCCGCACCACCACCTTTaaaaaa > 1:3392239/1‑93 (MQ=11)
gCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAAt < 1:3663035/93‑1 (MQ=255)
gCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAAt < 1:503035/93‑1 (MQ=255)
cGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAAtt > 2:2692846/1‑93 (MQ=255)
gAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGa > 2:6253541/1‑93 (MQ=255)
gAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGa > 1:1075538/1‑93 (MQ=255)
aTTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAAc < 2:5033965/93‑1 (MQ=255)
aTTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAAc > 1:865947/1‑93 (MQ=255)
tGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTa > 2:5739697/1‑93 (MQ=255)
tGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTa < 1:2082713/93‑1 (MQ=255)
ggTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTCAACAATTGAACtca > 1:5204959/1‑91 (MQ=17)
gTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTaaa < 2:5882648/93‑1 (MQ=255)
tAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTTAAG‑TC‑CCC‑CCCCCTCGCCCCACGA‑CCTTTAAGAATTGAGCTaaaa > 1:3568776/1‑93 (MQ=17)
gACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑T‑‑CCCGCCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTACAAAt > 2:3017755/1‑93 (MQ=255)
cgcgCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTc < 2:2941601/93‑1 (MQ=255)
cgcgCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTc < 1:4362292/93‑1 (MQ=255)
gcgcTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCa < 2:5141182/93‑1 (MQ=255)
ccTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCaaa < 1:3236910/92‑1 (MQ=255)
cTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCaaaa > 2:6156614/1‑93 (MQ=255)
aGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCCCCCCCACCTTTAAAAAATT‑AAATAAAAAATCaaaaaa > 1:3693390/1‑92 (MQ=9)
aGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAg < 2:2953444/93‑1 (MQ=255)
aGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAg > 2:3912215/1‑93 (MQ=255)
gCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGc < 1:2629419/93‑1 (MQ=255)
cTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCa < 1:2019963/93‑1 (MQ=255)
cTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCa < 2:3988646/93‑1 (MQ=255)
cTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑T‑‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAg < 2:1084166/93‑1 (MQ=255)
ttCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAg < 2:1250894/93‑1 (MQ=255)
ttCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAg < 1:73192/93‑1 (MQ=255)
tacAGATGTTAGTGGCCTTACGGGCTTGGCGGTTCAAGCC‑‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAg < 1:5576633/91‑1 (MQ=25)
tCAGGTGTTAGTGTCCTTACGGGCGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAAGTGAACTAAAAATTCAAAAAGCAGt < 1:127557/93‑1 (MQ=25)
cAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAGCC‑‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTa < 1:6238664/93‑1 (MQ=255)
aGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAACAGTAt > 2:5809280/1‑93 (MQ=255)
ggTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTAtt < 2:4149701/93‑1 (MQ=255)
gtgtTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTAttt < 1:2054885/93‑1 (MQ=255)
gtgtTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTAttt < 1:3305974/93‑1 (MQ=255)
tgtTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTc < 1:495912/93‑1 (MQ=255)
tgtTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTc < 2:4233212/93‑1 (MQ=255)
tgtTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTc > 1:687528/1‑93 (MQ=255)
ttAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCCCCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCgg < 2:883120/93‑1 (MQ=255)
tAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGc < 1:1761526/93‑1 (MQ=255)
tAGTGTCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGc < 2:1464933/93‑1 (MQ=255)
gtCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGt < 2:3699461/93‑1 (MQ=255)
gtCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGt < 2:4481121/93‑1 (MQ=255)
tCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTa < 1:2285971/93‑1 (MQ=255)
tCCTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAAATAAAAATTCAAAAAGCAGTATTTCGGCGAGTa > 2:2681252/1‑93 (MQ=255)
cTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAgc < 2:222621/93‑1 (MQ=255)
cTTACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAgc < 1:3749114/93‑1 (MQ=255)
ttACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAgcg < 2:3845142/93‑1 (MQ=255)
tccGGACGTGGGGTTTCAAGCC‑‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAgcgc < 1:1117065/91‑1 (MQ=38)
tACGGACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAgcgc < 1:5389982/93‑1 (MQ=255)
gACGTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCt > 2:3637314/1‑93 (MQ=255)
aCGTGGGGATTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCtt < 1:4276425/93‑1 (MQ=255)
gTGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTgg < 1:1488979/93‑1 (MQ=255)
tGGGGGTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGt < 2:4752649/93‑1 (MQ=255)
tGGGGGTTCAAG‑T‑‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTa > 1:4037319/1‑93 (MQ=255)
gggggTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTa > 2:3054350/1‑93 (MQ=255)
gggggTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTa < 2:3092180/93‑1 (MQ=255)
ggggTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAg > 2:3707930/1‑93 (MQ=255)
ggggTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGAGCAGCTTCGTAg > 1:2377960/1‑93 (MQ=255)
ggggTTCAAG‑CCCCCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTa < 1:3087345/93‑1 (MQ=255)
gggTTCAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAgc > 2:2519025/1‑93 (MQ=255)
cAAG‑TC‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAAc < 1:3591012/93‑1 (MQ=255)
|
CATTATTAGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑T‑‑CCC‑CCCCCTCGCACCACGA‑CTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAAC > NC_000913/3980197‑3980376
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑T‑‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCAG > NC_000913/3980204‑3980390
|
AGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAAG‑‑T‑‑CCCCC‑C‑CC > SRR4302534.3676762/1‑94 (MQ=33)
AGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAAG‑‑T‑‑CCCCC‑C‑CC > SRR4302534.3466239/1‑94 (MQ=33)
AGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAAG‑‑T‑‑CCCCC‑C‑CC > SRR4302534.513556/1‑94 (MQ=33)
AAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑T‑‑CCCCC‑C‑CCct < SRR4302534.4712096/94‑3 (MQ=29)
TGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAAG‑‑A‑‑CCCCC‑C‑CCcccccc > SRR4302534.2482822/1‑88 (MQ=14)
GACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCA < SRR4302534.106326/94‑1 (MQ=5)
GACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCA < SRR4302534.2399611/94‑1 (MQ=5)
ACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGCGGGGGTTCCAG‑‑T‑‑CCCCC‑C‑CCcccccccccc > SRR4302534.219241/1‑84 (MQ=3)
CAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCCAG‑‑G‑‑CCCCC‑C‑CCccctcctcccg > SRR4302534.1318225/1‑83 (MQ=0)
CAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACG < SRR4302534.4967118/94‑1 (MQ=5)
CAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACG < SRR4302534.4883/94‑1 (MQ=5)
CAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAAG‑‑T‑‑CCCCC‑C‑CCcccgccccacg > SRR4302534.3592358/1‑83 (MQ=0)
TGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACT < SRR4302534.1493570/94‑1 (MQ=7)
GCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTT < SRR4302534.5028313/94‑1 (MQ=10)
GCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTT < SRR4302534.3184646/94‑1 (MQ=10)
GCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTT < SRR4302534.3068666/94‑1 (MQ=10)
GCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTT < SRR4302534.2910456/94‑1 (MQ=10)
CGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTT > SRR4302534.313244/1‑94 (MQ=12)
CGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTT < SRR4302534.3791655/94‑1 (MQ=12)
CGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTT < SRR4302534.2090060/94‑1 (MQ=12)
GAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTA > SRR4302534.1950413/1‑94 (MQ=20)
GAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTA < SRR4302534.299716/94‑1 (MQ=20)
GAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTA < SRR4302534.2177944/94‑1 (MQ=20)
GAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTA > SRR4302534.2732057/1‑94 (MQ=20)
GAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTA > SRR4302534.5897873/1‑94 (MQ=19)
AAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTTA > SRR4302534.2790979/1‑94 (MQ=12)
AAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAA < SRR4302534.3985362/94‑1 (MQ=22)
AAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAA > SRR4302534.2844516/1‑94 (MQ=22)
AAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCCCACCACGACTTTAA > SRR4302534.1061427/1‑94 (MQ=7)
AAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAAGT‑T‑‑CCCCC‑C‑CC‑TCTCACCACCACCTTAA > SRR4302534.397898/1‑94 (MQ=0)
AGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAAG‑‑T‑‑CCCCC‑C‑CCcccgcaccaccgatttaaa > SRR4302534.3797286/1‑75 (MQ=0)
GGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑T‑‑CCCCC‑C‑CCTTCGCACCACGACTTTAAAG < SRR4302534.5676788/94‑1 (MQ=27)
GTGGCGGAATTGGTAGACGCGCTAGCTTCATGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGA < SRR4302534.2564070/94‑1 (MQ=28)
TGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAAG‑‑T‑‑CCCCC‑C‑CC‑CCGCACCACcacctttaaaaaa > SRR4302534.3483234/1‑81 (MQ=0)
GCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATT < SRR4302534.3761473/94‑1 (MQ=37)
GCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATT < SRR4302534.515555/94‑1 (MQ=37)
GCGGAATTGGGAGACGCGCACGCCTCAGGTATTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑T‑‑CCCCCTC‑CC‑TCGCACCACGACTTTAAAGAATT < SRR4302534.4954983/94‑1 (MQ=29)
GGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGA > SRR4302534.4189217/1‑94 (MQ=42)
GGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGA > SRR4302534.1103470/1‑94 (MQ=42)
AATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAAC > SRR4302534.887816/1‑94 (MQ=47)
ATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGATCAAG‑‑T‑‑CCCCCTC‑CC‑TCGCACCACCACTTTAAAACATTGAACT > SRR4302534.1699492/1‑94 (MQ=5)
ATTGCTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACT < SRR4302534.1515019/94‑1 (MQ=47)
TGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTCAACAATTGAACTCA > SRR4302534.5345398/1‑94 (MQ=22)
TGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAA < SRR4302534.5360634/94‑1 (MQ=54)
TGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAA < SRR4302534.2552643/94‑1 (MQ=54)
TGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAA < SRR4302534.2137273/94‑1 (MQ=54)
GTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTTAAG‑‑TC‑CCCCC‑C‑CC‑TCGCCCCACGACCTTTAAGAATTGAGCTAAAA > SRR4302534.3664766/1‑94 (MQ=4)
TAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAA < SRR4302534.3176580/94‑1 (MQ=60)
GACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATT < SRR4302534.4468646/94‑1 (MQ=60)
ACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTC < SRR4302534.2071413/94‑1 (MQ=60)
agaccggctgccttcagtgtttagtgcctttacggacttggggtttaaagccCCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAAT < SRR4302534.3133130/42‑1 (MQ=60)
CGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCA < SRR4302534.4479943/94‑1 (MQ=60)
CCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAA < SRR4302534.3323016/94‑1 (MQ=60)
CTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAA > SRR4302534.861734/1‑94 (MQ=60)
CTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑T‑‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAG < SRR4302534.3861158/94‑1 (MQ=60)
GCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCA < SRR4302534.2698969/94‑1 (MQ=60)
CTTCATGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAG < SRR4302534.3336817/94‑1 (MQ=60)
CTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAG < SRR4302534.1366879/94‑1 (MQ=60)
CTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAG < SRR4302534.2072815/94‑1 (MQ=60)
TTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGT < SRR4302534.75186/94‑1 (MQ=60)
TACAGATGTTAGTGGCCTTACGGGCTTGGCGGTTCAAGC‑C‑‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGT < SRR4302534.5727259/94‑1 (MQ=60)
TCAGGTGTTAGTGTCCTTACGGGCGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAAGTGAACTAAAAATTCAAAAAGCAGTA < SRR4302534.130938/94‑1 (MQ=60)
CAGGTGTTGGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TCCCCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTA < SRR4302534.2622724/94‑1 (MQ=60)
CAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAGC‑C‑‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTAT < SRR4302534.6407966/94‑1 (MQ=60)
CAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAAG‑‑TC‑CCCCC‑C‑CC‑TCCCACCACGACTTTtaaaaaattaactaaaaaattaaaaaaaagtat > SRR4302534.4824756/1‑61 (MQ=3)
GTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTC < SRR4302534.2108571/94‑1 (MQ=60)
GTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTC < SRR4302534.3394246/94‑1 (MQ=60)
GTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTC > SRR4302534.704329/1‑94 (MQ=60)
TGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TCCCCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTC < SRR4302534.114221/94‑1 (MQ=60)
TGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCG < SRR4302534.508286/94‑1 (MQ=60)
TGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCG < SRR4302534.4985583/94‑1 (MQ=60)
TAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCG < SRR4302534.1807221/94‑1 (MQ=60)
TCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAG < SRR4302534.3750156/94‑1 (MQ=60)
TCCTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAG < SRR4302534.2346633/94‑1 (MQ=60)
CTTACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCG < SRR4302534.3849818/94‑1 (MQ=60)
TCCGGACGTGGGGTTTCAAGC‑C‑‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCA < SRR4302534.1146237/94‑1 (MQ=60)
TACGGACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCA < SRR4302534.5535129/94‑1 (MQ=60)
GACGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTT < SRR4302534.6019414/94‑1 (MQ=60)
ACGTGGGGATTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTG < SRR4302534.4392119/94‑1 (MQ=60)
CGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGG < SRR4302534.3764830/94‑1 (MQ=60)
CGTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGG < SRR4302534.5313644/94‑1 (MQ=60)
gaggtgggggtccaagccCCCCC‑C‑CC‑TCGCACCACGATTTAAAAAAATTAAACAAAAAATCAAAAAAGCAGTATTCCGGCGAGTAGCGCAGCTT < SRR4302534.3430416/76‑1 (MQ=31)
GTGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGT < SRR4302534.1528138/94‑1 (MQ=60)
GTGGGGGTTCAAG‑‑T‑‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTA > SRR4302534.4145562/1‑94 (MQ=60)
TGGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTA < SRR4302534.4644341/94‑1 (MQ=60)
GGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGGAG > SRR4302534.1103316/1‑94 (MQ=60)
GGGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGAGCAGCTTCGTAG > SRR4302534.2441128/1‑94 (MQ=60)
GGGGGTTCAAG‑‑T‑‑CCCCC‑CACC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAG < SRR4302534.3186261/94‑1 (MQ=60)
GGGGTTCAAGCCC‑‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAG < SRR4302534.3168485/94‑1 (MQ=60)
GGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGC < SRR4302534.3985317/94‑1 (MQ=60)
GGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGC > SRR4302534.5735008/1‑94 (MQ=60)
GGGGTTCAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACCTTTAAGAATTGAACTAAAAATTCAAAAAGCAGAATTTCGGCGAGAAAAGCAGCTTGGGAGC > SRR4302534.1370615/1‑94 (MQ=60)
CAAG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACT < SRR4302534.3687594/94‑1 (MQ=60)
AG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGG > SRR4302534.1729199/1‑94 (MQ=60)
AG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGG < SRR4302534.1352526/94‑1 (MQ=60)
AG‑‑TC‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGGAGCGCAACTGG > SRR4302534.1298847/1‑94 (MQ=60)
aagccCCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTG < SRR4302534.5575169/89‑1 (MQ=60)
C‑‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTT < SRR4302534.4569527/94‑1 (MQ=60)
CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTG > SRR4302534.1557197/1‑94 (MQ=60)
CCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGG > SRR4302534.2866875/1‑94 (MQ=60)
CCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGG < SRR4302534.5802385/94‑1 (MQ=60)
CC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGAAGCTTGGTAGCGCAACTGGTTTGGGA > SRR4302534.6248805/1‑94 (MQ=60)
C‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGAC > SRR4302534.255329/1‑94 (MQ=60)
CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCA < SRR4302534.5626492/94‑1 (MQ=60)
CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCA > SRR4302534.1898503/1‑94 (MQ=60)
C‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCAG < SRR4302534.4169873/94‑1 (MQ=60)
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AGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑T‑‑CCCCC‑C‑CC‑TCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCAG > NC_000913/3980204‑3980390
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
