Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,980,699	G→A	T43T (ACG→ACA)	aslB →	putative arylsulfatase regulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,980,699	0	G	A	100.0%	996.2 / NA	254	T43T (ACG→ACA)	aslB	putative arylsulfatase regulator
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (146/108); total (146/108)

Only 100 of 264 total aligned reads displayed.

GGCGAAACCGAGCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACGCATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGGCAGGG  >  NC_000913/3980609‑3980788

ggCGAAACCGAGCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTcacaca                                                                                         >  1:4614305/1‑93 (MQ=255)

   gAAACCGCGCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACatat                                                                                      >  2:2849876/1‑93 (MQ=255)

   gAAACCGAGCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACatat                                                                                      >  2:5487016/1‑93 (MQ=255)

   gAAACCGAGCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACatat                                                                                      <  2:2260583/93‑1 (MQ=255)

    aaaCCGAGCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATg                                                                                     >  1:5583927/1‑93 (MQ=255)

     aaCCGAGCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATgg                                                                                    >  1:4957230/1‑93 (MQ=255)

        cGAGCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGAca                                                                                 >  1:548944/1‑92 (MQ=255)

        cGAGCGGTTCCGATTATAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACg                                                                                 >  1:5329797/1‑93 (MQ=255)

         gAGCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGa                                                                                <  1:1140519/93‑1 (MQ=255)

           gCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATg                                                                              >  1:5726785/1‑93 (MQ=255)

           gCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATg                                                                              >  2:3693100/1‑93 (MQ=255)

           gCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATg                                                                              <  2:3396173/93‑1 (MQ=255)

              gTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGaca                                                                           <  2:4353735/93‑1 (MQ=255)

                tCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACg                                                                         >  2:3015468/1‑93 (MQ=255)

                tCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACg                                                                         >  2:1266147/1‑93 (MQ=255)

                 ccGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGc                                                                        <  1:3903923/93‑1 (MQ=255)

                  cGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCt                                                                       >  2:2626331/1‑93 (MQ=255)

                  cGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCt                                                                       <  2:2491144/93‑1 (MQ=255)

                  cGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATAGACGATGACACGCt                                                                       <  1:4706476/93‑1 (MQ=255)

                   gATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTg                                                                      >  1:6208651/1‑93 (MQ=255)

                    aTTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTgg                                                                     >  2:3938906/1‑93 (MQ=255)

                     ttGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGa                                                                    >  1:3317458/1‑93 (MQ=255)

                     ttGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGa                                                                    <  2:4290901/93‑1 (MQ=255)

                     ttGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGa                                                                    >  1:782876/1‑93 (MQ=255)

                       gTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAg                                                                  <  2:4657469/93‑1 (MQ=255)

                       gTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAg                                                                  <  1:3428014/93‑1 (MQ=255)

                       gTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAg                                                                  >  2:1889300/1‑93 (MQ=255)

                       gTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAg                                                                  >  1:4685263/1‑93 (MQ=255)

                           tCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTa                                                              <  1:1626864/93‑1 (MQ=255)

                           tCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTa                                                              <  2:5083378/93‑1 (MQ=255)

                            cTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTAt                                                             <  2:2390551/93‑1 (MQ=255)

                             tGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATg                                                            >  2:1108119/1‑93 (MQ=255)

                             tGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATg                                                            >  2:1551221/1‑93 (MQ=255)

                             tGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATg                                                            <  2:4299860/93‑1 (MQ=255)

                              gAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGt                                                           >  1:5850180/1‑93 (MQ=255)

                              gAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGt                                                           >  2:3519073/1‑93 (MQ=255)

                               aaCTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTc                                                          <  2:2967076/93‑1 (MQ=255)

                                  tgtgACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGt                                                       >  2:868579/1‑93 (MQ=255)

                                  tgtgACTACTGTTTTTATCTCGAAAAACAATCCCTGTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGt                                                       <  2:589810/93‑1 (MQ=255)

                                   gtgACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTc                                                      >  1:5653275/1‑93 (MQ=255)

                                   gtgACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTc                                                      >  1:1193690/1‑93 (MQ=255)

                                     gACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCAc                                                    <  2:2786071/93‑1 (MQ=255)

                                       ctactGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACta                                                  >  2:5920458/1‑93 (MQ=255)

                                       ctactGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACta                                                  >  1:6405068/1‑93 (MQ=255)

                                        tactGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACtat                                                 <  2:6093692/93‑1 (MQ=255)

                                        tactGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACtat                                                 >  1:4539089/1‑93 (MQ=255)

                                         actGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACtata                                                >  2:1364795/1‑93 (MQ=255)

                                          ctGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTatat                                               <  1:1398654/93‑1 (MQ=255)

                                          ctGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTatat                                               >  1:2505775/1‑93 (MQ=255)

                                           tGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATc                                              <  2:2341723/93‑1 (MQ=255)

                                                ttATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGc                                         <  2:6189021/93‑1 (MQ=255)

                                                 tATCTCGAAAAACAATCCCTTTCCCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGcc                                        <  1:2694687/93‑1 (MQ=255)

                                                  aTCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCa                                       <  1:846513/93‑1 (MQ=255)

                                                  aTCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCa                                       <  2:3894177/93‑1 (MQ=255)

                                                  aTCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCa                                       <  2:317525/93‑1 (MQ=255)

                                                  aTCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCa                                       >  1:2593738/1‑93 (MQ=255)

                                                   tctcGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAg                                      >  1:60256/1‑93 (MQ=255)

                                                         aaaaCAATCCCTTTACCGCGAACAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCTTCACTATATCGCTGCCAGCGAAcc                                <  2:5174054/93‑1 (MQ=255)

                                                         aaaaCAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAAcc                                >  2:213941/1‑93 (MQ=255)

                                                          aaaCAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCg                               <  2:4484755/93‑1 (MQ=255)

                                                           aaCAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGc                              >  1:1488489/1‑93 (MQ=255)

                                                           aaCAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGc                              >  1:1063561/1‑93 (MQ=255)

                                                            aCAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCa                             >  1:2255964/1‑93 (MQ=255)

                                                               aTCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCaaaa                          >  2:2091020/1‑93 (MQ=255)

                                                                tCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAAc                         >  2:4673314/1‑93 (MQ=255)

                                                                  ccTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGa                       >  1:4931868/1‑93 (MQ=255)

                                                                    tttACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAg                     >  1:5227884/1‑93 (MQ=255)

                                                                    tttACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAg                     <  2:4412294/93‑1 (MQ=255)

                                                                    tttACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAg                     >  1:210372/1‑93 (MQ=255)

                                                                    tttACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAg                     >  1:4078757/1‑93 (MQ=255)

                                                                    tttACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAg                     >  1:2484455/1‑93 (MQ=255)

                                                                     ttACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGt                    <  2:2672452/93‑1 (MQ=255)

                                                                      tACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTg                   >  2:756258/1‑93 (MQ=255)

                                                                      tACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTg                   <  1:3147272/93‑1 (MQ=255)

                                                                      tACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTg                   <  2:555394/93‑1 (MQ=255)

                                                                      tACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTg                   <  2:530772/93‑1 (MQ=255)

                                                                        ccGCGAAAAGCCAGTCACACATATGGACGATGACACGCTAGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGc                 >  2:6259249/1‑93 (MQ=255)

                                                                         cgcgAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCt                >  1:1757197/1‑93 (MQ=255)

                                                                          gcgAAAAGCTAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCtt               <  1:4269141/93‑1 (MQ=255)

                                                                            gAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCtttt             <  2:5274522/93‑1 (MQ=255)

                                                                            gAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCtttt             >  2:4071191/1‑93 (MQ=255)

                                                                            gAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAAAGAAGTGGCtttt             >  1:3540236/1‑93 (MQ=255)

                                                                             aaaaGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTa            >  1:5926258/1‑93 (MQ=255)

                                                                             aaaaGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTa            >  2:5759134/1‑93 (MQ=255)

                                                                              aaaGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTAc           >  1:2920053/1‑93 (MQ=255)

                                                                              aaaGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTAc           >  1:6129349/1‑93 (MQ=255)

                                                                              aaaGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTAc           >  2:5336925/1‑93 (MQ=255)

                                                                              aaaGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTAc           >  1:4124485/1‑93 (MQ=255)

                                                                                aGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCt         <  1:5078430/93‑1 (MQ=255)

                                                                                aGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCt         <  1:2120597/93‑1 (MQ=255)

                                                                                aGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCt         <  2:656122/93‑1 (MQ=255)

                                                                                 gCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTg        >  2:623573/1‑93 (MQ=255)

                                                                                    aGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGGCa     >  1:4511464/1‑93 (MQ=255)

                                                                                     gTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGGCAg    >  1:1105653/1‑93 (MQ=255)

                                                                                     gTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGGCAg    >  2:4853609/1‑93 (MQ=255)

                                                                                     gTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGGCAg    <  1:3798012/93‑1 (MQ=255)

                                                                                      tCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGGCAgg   <  1:947039/93‑1 (MQ=255)

                                                                                      tCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGGCAgg   >  2:3205188/1‑93 (MQ=255)

                                                                                       cacacaTATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGGCAggg  <  1:3183254/93‑1 (MQ=255)

                                                                                       cacacaTATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGGCAggg  >  2:1385631/1‑93 (MQ=255)

GGCGAAACCGAGCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACGCATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGGCAGGG  >  NC_000913/3980609‑3980788

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GATGGCGAAACCGAGCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACGCATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGGCAGGGCGGC  >  NC_000913/3980606‑3980792

GATGGCGAAACCGAGCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACA                                                                                               <  SRR4302534.5083582/94‑1 (MQ=60)

GATGGCGAAACCGAGCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACA                                                                                               <  SRR4302534.5044891/94‑1 (MQ=60)

GATGGCGAAACCGAGCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACA                                                                                               >  SRR4302534.818615/1‑94 (MQ=60)

GATGGCGAAACCGAGCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACA                                                                                               <  SRR4302534.4121081/94‑1 (MQ=60)

  TGGCGAAACCGAGCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACA                                                                                             >  SRR4302534.4739527/1‑94 (MQ=60)

     CGAAACCGAGCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATAT                                                                                          >  SRR4302534.4815035/1‑94 (MQ=60)

      GAAACCGAGCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATG                                                                                         <  SRR4302534.4647892/94‑1 (MQ=60)

      GAAACCGAGCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATG                                                                                         >  SRR4302534.5734813/1‑94 (MQ=60)

       AAACCGAGCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGG                                                                                        >  SRR4302534.5091478/1‑94 (MQ=60)

        agcgtagcgaTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGA                                                                                       <  SRR4302534.4597082/84‑1 (MQ=60)

         ACCGAGCTGTTCCGATTGTAATCTGACCTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGAC                                                                                      <  SRR4302534.2426061/94‑1 (MQ=60)

          CCGAGCGGTTCCGATTATAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACG                                                                                     >  SRR4302534.5473540/1‑94 (MQ=60)

          ACGAGCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACA                                                                                     >  SRR4302534.562489/1‑94 (MQ=60)

           CGAGCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGA                                                                                    >  SRR4302534.302779/1‑94 (MQ=60)

            GAGCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGAT                                                                                   <  SRR4302534.1170371/94‑1 (MQ=60)

            GAGCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGAT                                                                                   >  SRR4302534.2017137/1‑94 (MQ=60)

             AGCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATG                                                                                  <  SRR4302534.2756019/94‑1 (MQ=60)

             AGCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATG                                                                                  >  SRR4302534.3786905/1‑94 (MQ=60)

             AGCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATG                                                                                  >  SRR4302534.5881954/1‑94 (MQ=60)

                GGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACA                                                                               >  SRR4302534.5776549/1‑94 (MQ=60)

                GGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACA                                                                               >  SRR4302534.921794/1‑94 (MQ=60)

                GGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCAAACATATGGACGATGACA                                                                               >  SRR4302534.2217758/1‑94 (MQ=60)

                GGTTCCCATTGTAATCTGAACTGTGACTACTGTTTTTATCTCCAAAAACAATCCCTTTACCCCGAAAAGCCAGTCACACATATGGACGATGACC                                                                               >  SRR4302534.3301723/1‑94 (MQ=60)

                  TTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACG                                                                             >  SRR4302534.1481853/1‑94 (MQ=60)

                    CCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCT                                                                           <  SRR4302534.4008619/94‑1 (MQ=60)

                     CGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTG                                                                          >  SRR4302534.6377425/1‑94 (MQ=60)

                     CGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTG                                                                          >  SRR4302534.6377424/1‑94 (MQ=60)

                     CGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATAGACGATGACACGCTG                                                                          <  SRR4302534.4834245/94‑1 (MQ=60)

                       ATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGA                                                                        >  SRR4302534.3406138/1‑94 (MQ=60)

                       ATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGA                                                                        >  SRR4302534.802404/1‑94 (MQ=60)

                        TTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAA                                                                       >  SRR4302534.2293612/1‑94 (MQ=60)

                         TGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAG                                                                      >  SRR4302534.4812457/1‑94 (MQ=60)

                         TGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAG                                                                      <  SRR4302534.6376400/94‑1 (MQ=60)

                          GTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGC                                                                     <  SRR4302534.3520104/94‑1 (MQ=60)

                          GTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGC                                                                     <  SRR4302534.2524275/94‑1 (MQ=60)

                           TAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCG                                                                    <  SRR4302534.5508350/94‑1 (MQ=60)

                            AATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGT                                                                   <  SRR4302534.1134777/94‑1 (MQ=60)

                            AATCTGAACGGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGT                                                                   <  SRR4302534.4812555/94‑1 (MQ=60)

                              TCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTAT                                                                 <  SRR4302534.1669311/94‑1 (MQ=60)

                              TCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTAT                                                                 <  SRR4302534.6289221/94‑1 (MQ=60)

                              TCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTAT                                                                 <  SRR4302534.6289220/94‑1 (MQ=60)

                               CTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATG                                                                <  SRR4302534.1757998/94‑1 (MQ=60)

                               CTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATG                                                                >  SRR4302534.430840/1‑94 (MQ=60)

                               CTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATG                                                                <  SRR4302534.1536114/94‑1 (MQ=60)

                               CTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATG                                                                <  SRR4302534.5186120/94‑1 (MQ=60)

                                TGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGT                                                               >  SRR4302534.6009032/1‑94 (MQ=60)

                                 GAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTC                                                              >  SRR4302534.2898276/1‑94 (MQ=60)

                                  AACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCC                                                             >  SRR4302534.4296973/1‑94 (MQ=60)

                                    CTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGT                                                           <  SRR4302534.5758147/94‑1 (MQ=60)

                                     TGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTC                                                          >  SRR4302534.1225086/1‑94 (MQ=60)

                                     TGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTC                                                          >  SRR4302534.5806290/1‑94 (MQ=60)

                                       TGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCAC                                                        >  SRR4302534.4214566/1‑94 (MQ=60)

                                        GACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACT                                                       >  SRR4302534.4650954/1‑94 (MQ=60)

                                        GACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACT                                                       <  SRR4302534.6033911/94‑1 (MQ=60)

                                        GACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACT                                                       <  SRR4302534.6406410/94‑1 (MQ=60)

                                         ACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTA                                                      >  SRR4302534.6577975/1‑94 (MQ=60)

                                          CTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTAT                                                     >  SRR4302534.4662120/1‑94 (MQ=60)

                                          CTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTAT                                                     >  SRR4302534.3959581/1‑94 (MQ=60)

                                            ACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATAT                                                   >  SRR4302534.2572313/1‑94 (MQ=60)

                                             CTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATC                                                  <  SRR4302534.3740847/94‑1 (MQ=60)

                                             CTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATC                                                  <  SRR4302534.3981410/94‑1 (MQ=60)

                                             CTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATC                                                  <  SRR4302534.1435451/94‑1 (MQ=60)

                                              TGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCG                                                 <  SRR4302534.4793771/94‑1 (MQ=60)

                                              TGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCG                                                 >  SRR4302534.1283125/1‑94 (MQ=60)

                                                TTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGGAACGCTGGAAGCGTATGTCCGTCACTATATCGCT                                               >  SRR4302534.6104942/1‑94 (MQ=60)

                                                TTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCT                                               >  SRR4302534.1682670/1‑94 (MQ=60)

                                                 TTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTG                                              <  SRR4302534.5420134/94‑1 (MQ=60)

                                                  TTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACACATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGC                                             >  SRR4302534.2559061/1‑94 (MQ=60)

                                                    TATCTCGAAAAACAATCCCTTTCCCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCA                                           <  SRR4302534.2765888/94‑1 (MQ=60)

                                                    TATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCA                                           <  SRR4302534.4049224/94‑1 (MQ=60)

                                                    TATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCA                                           >  SRR4302534.2662389/1‑94 (MQ=60)

                                                     ATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAG                                          <  SRR4302534.867851/94‑1 (MQ=60)

                                                     ATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAG                                          >  SRR4302534.61887/1‑94 (MQ=60)

                                                      TCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGC                                         <  SRR4302534.4206804/94‑1 (MQ=60)

                                                       CTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCG                                        >  SRR4302534.5930724/1‑94 (MQ=60)

                                                       CTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCG                                        >  SRR4302534.5909452/1‑94 (MQ=60)

                                                         CGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAA                                      <  SRR4302534.349208/94‑1 (MQ=60)

                                                             AAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGC                                  >  SRR4302534.1527636/1‑94 (MQ=60)

                                                             AAACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGC                                  >  SRR4302534.1091128/1‑94 (MQ=60)

                                                              TACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCA                                 >  SRR4302534.2315765/1‑94 (MQ=60)

                                                              AACAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCA                                 >  SRR4302534.1512596/1‑94 (MQ=60)

                                                               ACAATCCCTTTTCCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGAGTATGTCtgtggctatatagttgccggggagccgata                                >  SRR4302534.5393322/1‑64 (MQ=60)

                                                                CAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCTCAAA                               >  SRR4302534.5065607/1‑94 (MQ=60)

                                                                CAATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAA                               >  SRR4302534.6625779/1‑94 (MQ=60)

                                                                  ATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAAC                             >  SRR4302534.5199154/1‑94 (MQ=60)

                                                                  ATCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAAC                             <  SRR4302534.2919863/94‑1 (MQ=60)

                                                                   TCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACG                            >  SRR4302534.1118848/1‑94 (MQ=60)

                                                                   TCCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACG                            >  SRR4302534.1327995/1‑94 (MQ=60)

                                                                    CCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGA                           >  SRR4302534.5065540/1‑94 (MQ=60)

                                                                    CCCTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGA                           >  SRR4302534.203698/1‑94 (MQ=60)

                                                                      CTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAG                         >  SRR4302534.2550452/1‑94 (MQ=60)

                                                                      CTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAG                         >  SRR4302534.5369016/1‑94 (MQ=60)

                                                                      CTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAG                         >  SRR4302534.215890/1‑94 (MQ=60)

                                                                      CTTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAG                         >  SRR4302534.4188229/1‑94 (MQ=60)

                                                                       TTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGT                        <  SRR4302534.2585405/94‑1 (MQ=60)

                                                                       TTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGT                        >  SRR4302534.119886/1‑94 (MQ=60)

                                                                       CTTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGT                        <  SRR4302534.5434933/94‑1 (MQ=60)

                                                                        TTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTG                       >  SRR4302534.473690/1‑94 (MQ=60)

                                                                        TTACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTG                       >  SRR4302534.3232449/1‑94 (MQ=60)

                                                                         TACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGG                      >  SRR4302534.2166193/1‑94 (MQ=60)

                                                                         TACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGG                      <  SRR4302534.3230054/94‑1 (MQ=60)

                                                                         TACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGG                      <  SRR4302534.336021/94‑1 (MQ=60)

                                                                          ACCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGC                     <  SRR4302534.6112964/94‑1 (MQ=60)

                                                                           CCGCGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCT                    >  SRR4302534.1802815/1‑94 (MQ=60)

                                                                            CGCGAAAAGCCATGCTCACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTT                   <  SRR4302534.4901860/94‑1 (MQ=60)

                                                                             GCGAAAAGCTAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTT                  <  SRR4302534.4384519/94‑1 (MQ=60)

                                                                              CGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTT                 >  SRR4302534.824432/1‑94 (MQ=60)

                                                                              CGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTT                 >  SRR4302534.116670/1‑94 (MQ=60)

                                                                              CGAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAAAGAAGTGGCTTTT                 >  SRR4302534.3635468/1‑94 (MQ=60)

                                                                               GAAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTA                >  SRR4302534.6087178/1‑94 (MQ=60)

                                                                                AAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTAC               >  SRR4302534.6296082/1‑94 (MQ=60)

                                                                                AAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTAC               >  SRR4302534.2996681/1‑94 (MQ=60)

                                                                                AAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTAC               >  SRR4302534.3201485/1‑94 (MQ=60)

                                                                                AAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTAC               <  SRR4302534.4716398/94‑1 (MQ=60)

                                                                                AAAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTAC               >  SRR4302534.4235505/1‑94 (MQ=60)

                                                                                 AAAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTAAC              >  SRR4302534.6027457/1‑94 (MQ=60)

                                                                                  AAGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCT             >  SRR4302534.2644083/1‑94 (MQ=60)

                                                                                   CGCCAGTCACACATATGGACGCTGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGGCAGCGAACCGCAAAACGGAGTGGCCTTTACCTG            >  SRR4302534.5416679/1‑94 (MQ=60)

                                                                                   AGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTG            >  SRR4302534.5859681/1‑94 (MQ=60)

                                                                                   AGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTG            >  SRR4302534.5073306/1‑94 (MQ=60)

                                                                                   AGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTG            <  SRR4302534.5215517/94‑1 (MQ=60)

                                                                                   AGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTG            <  SRR4302534.2176421/94‑1 (MQ=60)

                                                                                   AGCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTG            >  SRR4302534.3488557/1‑94 (MQ=60)

                                                                                    GCCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGG           >  SRR4302534.4523717/1‑94 (MQ=60)

                                                                                     CCAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCCAAACGAAGAGGCTTTTACCTCGC          >  SRR4302534.36101/1‑94 (MQ=60)

                                                                                      CAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGGCA         >  SRR4302534.4633649/1‑94 (MQ=60)

                                                                                      CAGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGGCA         <  SRR4302534.521459/94‑1 (MQ=60)

                                                                                       AGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGGCAG        >  SRR4302534.1134475/1‑94 (MQ=60)

                                                                                       AGTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGGCAG        >  SRR4302534.827973/1‑94 (MQ=60)

                                                                                        GTCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGGCAGG       <  SRR4302534.3899996/94‑1 (MQ=60)

                                                                                         TCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGGCAGGG      <  SRR4302534.971142/94‑1 (MQ=60)

                                                                                         TCACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGCGGCTTTTACCTGGCAGGG      >  SRR4302534.5545936/1‑94 (MQ=60)

                                                                                          CACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGGCAGGGC     >  SRR4302534.438661/1‑94 (MQ=60)

                                                                                          CACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGGCAGGGC     <  SRR4302534.3267402/94‑1 (MQ=60)

                                                                                          CACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGGCAGGGC     >  SRR4302534.2151747/1‑94 (MQ=60)

                                                                                          CACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGGCAGGGC     <  SRR4302534.5639947/94‑1 (MQ=60)

                                                                                           ACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGGCAGGGCG    >  SRR4302534.1660361/1‑94 (MQ=60)

                                                                                           ACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGGCAGGGCG    >  SRR4302534.2919512/1‑94 (MQ=60)

                                                                                           ACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGGCAGGGCG    >  SRR4302534.3811973/1‑94 (MQ=60)

                                                                                           ACACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGGCAGGGCG    <  SRR4302534.3680461/94‑1 (MQ=60)

                                                                                             ACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGGCAGGGCGGC  <  SRR4302534.1753185/94‑1 (MQ=60)

                                                                                             ACATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGGCAGGGCGGC  >  SRR4302534.4686231/1‑94 (MQ=60)

GATGGCGAAACCGAGCGGTTCCGATTGTAATCTGAACTGTGACTACTGTTTTTATCTCGAAAAACAATCCCTTTACCGCGAAAAGCCAGTCACGCATATGGACGATGACACGCTGGAAGCGTATGTCCGTCACTATATCGCTGCCAGCGAACCGCAAAACGAAGTGGCTTTTACCTGGCAGGGCGGC  >  NC_000913/3980606‑3980792

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`