Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,986,916 |
C→T |
A176T (GCC→ACC) |
hemD ← |
uroporphyrinogen III synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,986,916 | 0 | C | T | 100.0%
| 919.5
/ NA
| 252 | A176T (GCC→ACC) | hemD | uroporphyrinogen III synthase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (135/117); total (135/117) |
Only 100 of 262 total aligned reads displayed.
ACCAGTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGCTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCACCGCGCGCCG > NC_000913/3986826‑3987005
|
aCCAGTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGttt < 1:1234460/93‑1 (MQ=255)
aCCAGTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGttt < 1:6165971/93‑1 (MQ=255)
aCCAGTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGttt > 2:4595355/1‑93 (MQ=255)
aGTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGcc < 1:3559691/93‑1 (MQ=255)
aGTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGcc < 1:3944642/93‑1 (MQ=255)
gTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCa < 1:4709060/93‑1 (MQ=255)
tGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAg < 1:3783459/93‑1 (MQ=255)
tGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAg > 1:6044064/1‑93 (MQ=255)
cTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAgcg > 2:2140715/1‑93 (MQ=255)
tCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAgcgc > 2:1242039/1‑93 (MQ=255)
tCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAgcgc < 1:5901401/93‑1 (MQ=255)
tCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAgcgc > 1:4865728/1‑93 (MQ=255)
cACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCa > 1:5422487/1‑93 (MQ=255)
cACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCa > 2:105143/1‑93 (MQ=255)
aTACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGc > 2:906376/1‑93 (MQ=255)
aTACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGc < 2:1677587/93‑1 (MQ=255)
aTACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGc > 1:2898801/1‑93 (MQ=255)
aTACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGc > 1:2699849/1‑93 (MQ=255)
tACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGct > 1:1599871/1‑93 (MQ=255)
aCCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGctt < 2:3568773/93‑1 (MQ=255)
ccATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGcttc < 2:1994977/93‑1 (MQ=255)
ccATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGcttc < 2:6148528/93‑1 (MQ=255)
aTTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGcttctt > 2:4889922/1‑93 (MQ=255)
aTTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGcttctt > 1:4113731/1‑93 (MQ=255)
ttGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCttcttc < 2:1584928/93‑1 (MQ=255)
ttGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCttcttc < 1:3710687/93‑1 (MQ=255)
tgtgGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTtcttct < 1:3139466/93‑1 (MQ=255)
ggATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCAc > 2:5689649/1‑93 (MQ=255)
ggATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCAc < 1:192365/93‑1 (MQ=255)
aTCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCa < 2:5576369/93‑1 (MQ=255)
aTCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCa < 1:1197049/93‑1 (MQ=255)
aGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCg > 2:1366668/1‑93 (MQ=255)
aGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCg > 2:5223340/1‑93 (MQ=255)
gCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGt < 2:4989424/93‑1 (MQ=255)
ccAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATg < 2:4821998/93‑1 (MQ=255)
ccAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATg < 1:1803917/93‑1 (MQ=255)
ccAGAGTAGCTGCAACATTTCACCGCTGATACCATCGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATg < 2:4147216/93‑1 (MQ=255)
cAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATgg > 2:384969/1‑93 (MQ=255)
agagTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGa < 1:856715/93‑1 (MQ=255)
agagTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGa < 1:2218275/93‑1 (MQ=255)
agagTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGAGCATCGCTTCTTCTGCACCATCGTAATGGa > 1:1428416/1‑93 (MQ=255)
gagTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGAt > 1:713237/1‑93 (MQ=255)
gagTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGAt > 1:1311661/1‑93 (MQ=255)
agTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGAtt > 2:176974/1‑93 (MQ=255)
agTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGAtt > 1:1454759/1‑93 (MQ=255)
ttGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTgc < 2:1289715/93‑1 (MQ=255)
ttGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTgc > 2:3061757/1‑93 (MQ=255)
tgcAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCAt > 2:729915/1‑93 (MQ=255)
gcAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATc > 1:6002833/1‑93 (MQ=255)
gcAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATc > 2:6173577/1‑93 (MQ=255)
gcAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATc < 1:2109610/93‑1 (MQ=255)
gcAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATc > 1:3736137/1‑93 (MQ=255)
aaCATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGt > 2:1730724/1‑93 (MQ=255)
aaCATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGt < 1:4533766/93‑1 (MQ=255)
aCATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGtt > 2:646098/1‑93 (MQ=255)
aCATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGtt > 1:68184/1‑93 (MQ=255)
aCATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGtt > 2:5419442/1‑93 (MQ=255)
cATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTg < 2:2901176/93‑1 (MQ=255)
aTTTCCCCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGa < 2:796903/93‑1 (MQ=255)
tttCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGAt < 2:6380019/93‑1 (MQ=255)
tttCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGAt < 1:322589/93‑1 (MQ=255)
tttCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGAt > 2:3946221/1‑93 (MQ=255)
cACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAAc < 1:1703001/93‑1 (MQ=255)
acagCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCTCATCGTTGATAACa > 1:6156949/4‑93 (MQ=255)
cGCTGGTAACATCTACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCCCCATCGTAATGGATTGCGCATCGTTGATAACAtt < 1:4468185/93‑1 (MQ=255)
cGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACAtt > 2:5108723/1‑93 (MQ=255)
cTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTca < 2:628727/93‑1 (MQ=255)
tGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGCTCGCGCATCGTTGATAACATTcac > 1:4058022/1‑93 (MQ=255)
tGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTcac < 2:5896296/93‑1 (MQ=255)
ggTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTcaca > 1:833667/1‑93 (MQ=255)
aacaacGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACaaaa > 1:2388911/1‑93 (MQ=255)
acaacGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACaaaaa > 1:1078765/1‑93 (MQ=255)
acaacGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACaaaaa > 2:2795123/1‑93 (MQ=255)
caacGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAg < 2:3914623/93‑1 (MQ=255)
caacGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAg < 1:4320714/93‑1 (MQ=255)
acGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTg < 1:1637755/93‑1 (MQ=255)
cgcccACCGTCCCCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGa < 1:3859034/90‑1 (MQ=255)
gACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGAc < 1:2512846/93‑1 (MQ=255)
gACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGAc < 1:1724982/93‑1 (MQ=255)
aCCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAAAATTCACAAAAAGTGAcc > 2:5362754/1‑93 (MQ=255)
ccATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCt < 1:3675240/93‑1 (MQ=255)
cATCGTCACCTCGCTGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTc < 1:2760994/93‑1 (MQ=255)
cATCGTCACCTCGCGGTTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTc < 2:3691634/93‑1 (MQ=255)
aTCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAAGATTCACAAAAAGTGACCTCa < 1:6325364/93‑1 (MQ=255)
aTCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCa > 1:5565862/1‑93 (MQ=255)
aTCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCa > 1:5759898/1‑93 (MQ=255)
aTCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCa > 2:1932266/1‑93 (MQ=255)
aTCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCa > 1:2451355/1‑93 (MQ=255)
cGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGc < 1:3526099/93‑1 (MQ=255)
gTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCa < 2:2260137/93‑1 (MQ=255)
gTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCa > 1:1155618/1‑93 (MQ=255)
gTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCa > 2:5488301/1‑93 (MQ=255)
gTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCa > 2:2448181/1‑93 (MQ=255)
aCCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCACcg > 1:4434431/1‑93 (MQ=255)
aCCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCACcg > 2:3375480/1‑93 (MQ=255)
ccTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCACcgc > 2:3422108/1‑93 (MQ=255)
tCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCACcgcgc > 1:5126334/1‑93 (MQ=255)
tCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCACcgcgc < 2:3615056/93‑1 (MQ=255)
cgGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCACCGCGCGcc > 1:6089749/1‑93 (MQ=255)
gggTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCACCGCGCGCCg > 2:2641118/1‑93 (MQ=255)
|
ACCAGTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGCTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCACCGCGCGCCG > NC_000913/3986826‑3987005
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTAACCAGTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGCTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCACCGCGCGCCGTCAG > NC_000913/3986823‑3987009
|
GTAACCAGTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGT > SRR4302534.1633918/1‑94 (MQ=60)
GTAACCAGTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGT < SRR4302534.3710215/94‑1 (MQ=60)
TAACCAGTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTT > SRR4302534.878158/1‑94 (MQ=60)
TAACCAGTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTT > SRR4302534.4775518/1‑94 (MQ=60)
TAACCAGTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTT > SRR4302534.1885081/1‑94 (MQ=60)
TAACCAGTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTT > SRR4302534.6182516/1‑94 (MQ=60)
TAACCAGTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTT < SRR4302534.1898402/94‑1 (MQ=60)
atgCAGTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTCCTGCAACATTTTACCGCTGGTAACAACGACCATCGTCGCCTCGCGGGTTT < SRR4302534.3440282/91‑1 (MQ=60)
AACCAGTGCTCACGATACCATTGTGGGATCAGTGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTT < SRR4302534.1587448/94‑1 (MQ=60)
AACCAGTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTT < SRR4302534.6609402/94‑1 (MQ=60)
ACCAGTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTG < SRR4302534.1266992/94‑1 (MQ=60)
ACCAGTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTG < SRR4302534.6333682/94‑1 (MQ=60)
ACCAGTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTG > SRR4302534.4175545/1‑94 (MQ=60)
CCAGTGCTCACGATACCATTGTGGGATCAGCGACCAGAGGTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGC > SRR4302534.4822076/1‑94 (MQ=60)
CAGTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCC > SRR4302534.6282007/1‑94 (MQ=60)
AGTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCA < SRR4302534.3655461/94‑1 (MQ=60)
AGTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCA > SRR4302534.5823773/1‑94 (MQ=60)
AGTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCA < SRR4302534.4050273/94‑1 (MQ=60)
AGTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCA < SRR4302534.3214844/94‑1 (MQ=60)
GTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAG < SRR4302534.3884789/94‑1 (MQ=60)
GTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAG < SRR4302534.4836910/94‑1 (MQ=60)
GTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAG > SRR4302534.6208364/1‑94 (MQ=60)
TGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGC < SRR4302534.3885039/94‑1 (MQ=60)
TGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGC < SRR4302534.3627999/94‑1 (MQ=60)
CTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGC > SRR4302534.4997714/1‑94 (MQ=60)
TCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCA > SRR4302534.5568411/1‑94 (MQ=60)
TCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCA < SRR4302534.6061630/94‑1 (MQ=60)
CACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCAT > SRR4302534.3792119/1‑94 (MQ=60)
CGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCG < SRR4302534.98264/94‑1 (MQ=60)
CGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCG > SRR4302534.3181387/1‑94 (MQ=60)
CGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCG < SRR4302534.1850036/94‑1 (MQ=60)
CGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCG < SRR4302534.5701993/94‑1 (MQ=60)
CGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCG < SRR4302534.1268047/94‑1 (MQ=60)
GATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGC > SRR4302534.2974881/1‑94 (MQ=60)
GATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGC > SRR4302534.2771173/1‑94 (MQ=60)
ATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCT > SRR4302534.4158686/1‑94 (MQ=60)
ATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCT < SRR4302534.1127192/94‑1 (MQ=60)
ATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCT > SRR4302534.1767735/1‑94 (MQ=60)
ATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCT > SRR4302534.1519642/1‑94 (MQ=60)
ATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCT > SRR4302534.1641666/1‑94 (MQ=60)
TACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTT < SRR4302534.2424693/94‑1 (MQ=60)
ACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTC > SRR4302534.2833989/1‑94 (MQ=60)
CCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCT < SRR4302534.63282/94‑1 (MQ=60)
CCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCT < SRR4302534.4485304/94‑1 (MQ=60)
CATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTT > SRR4302534.1442992/1‑94 (MQ=60)
CATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTT < SRR4302534.2822262/94‑1 (MQ=60)
CATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTT > SRR4302534.4224392/1‑94 (MQ=60)
CATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTT < SRR4302534.822410/94‑1 (MQ=60)
ATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTC > SRR4302534.1696037/1‑94 (MQ=60)
ATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTC > SRR4302534.3659567/1‑94 (MQ=60)
TTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCT > SRR4302534.45888/1‑94 (MQ=60)
TTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCT > SRR4302534.5500678/1‑94 (MQ=60)
TTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCT < SRR4302534.4004373/94‑1 (MQ=60)
TTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCT < SRR4302534.1266744/94‑1 (MQ=60)
TTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCC < SRR4302534.3810452/94‑1 (MQ=60)
TGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTG < SRR4302534.3835088/94‑1 (MQ=60)
TGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTG < SRR4302534.3222031/94‑1 (MQ=60)
TGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCAACGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTG < SRR4302534.649906/94‑1 (MQ=60)
GGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCAC > SRR4302534.1206450/1‑94 (MQ=60)
GGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCAC > SRR4302534.4425352/1‑94 (MQ=60)
GGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACC < SRR4302534.2583792/94‑1 (MQ=60)
GGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACC > SRR4302534.5116722/1‑94 (MQ=60)
GGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACC < SRR4302534.197396/94‑1 (MQ=60)
GGATCAGCGACAAGAGTTGCTGCAACATTCCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACC < SRR4302534.4123269/94‑1 (MQ=60)
ATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCAT < SRR4302534.1228548/94‑1 (MQ=60)
ATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCAT < SRR4302534.1668604/94‑1 (MQ=60)
TCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATC > SRR4302534.333062/1‑94 (MQ=60)
CAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCG < SRR4302534.4622989/94‑1 (MQ=60)
CAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCG > SRR4302534.4091688/1‑94 (MQ=60)
AGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGT > SRR4302534.4980241/1‑94 (MQ=60)
GCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTA < SRR4302534.2520157/94‑1 (MQ=60)
CGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAA > SRR4302534.4844472/1‑94 (MQ=60)
CGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAA > SRR4302534.14826/1‑94 (MQ=60)
CGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAA > SRR4302534.674982/1‑94 (MQ=60)
GACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAAT < SRR4302534.2040762/94‑1 (MQ=60)
GACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAAT > SRR4302534.807220/1‑94 (MQ=60)
ACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATG > SRR4302534.6232531/1‑94 (MQ=60)
CCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGG < SRR4302534.1850760/94‑1 (MQ=60)
CAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGA > SRR4302534.715831/1‑94 (MQ=60)
CAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGAGCATCGCTTCTTCTGCACCATCGTAATGGA > SRR4302534.1466008/1‑94 (MQ=60)
AGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGAT < SRR4302534.878335/94‑1 (MQ=60)
AGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGAT < SRR4302534.2277022/94‑1 (MQ=60)
AGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGAT > SRR4302534.1346248/1‑94 (MQ=60)
AGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGAT < SRR4302534.1311058/94‑1 (MQ=60)
AGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGAT > SRR4302534.730780/1‑94 (MQ=60)
GAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATT > SRR4302534.1493021/1‑94 (MQ=60)
GTTGCTGCAACATTTCGCCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGC < SRR4302534.5851567/94‑1 (MQ=60)
TGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGC > SRR4302534.2477099/1‑94 (MQ=60)
TGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGC > SRR4302534.2365983/1‑94 (MQ=60)
CTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCAT > SRR4302534.1209210/1‑94 (MQ=60)
TGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATC > SRR4302534.6165904/1‑94 (MQ=60)
TGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATC < SRR4302534.4414794/94‑1 (MQ=60)
TGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATC < SRR4302534.387287/94‑1 (MQ=60)
TGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATC > SRR4302534.3836496/1‑94 (MQ=60)
TGCAACATTTCACCGCTGGCAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCCTC > SRR4302534.1759464/1‑94 (MQ=60)
GCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCG < SRR4302534.2165059/94‑1 (MQ=60)
AACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTT < SRR4302534.4541480/94‑1 (MQ=60)
AACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTT < SRR4302534.4656627/94‑1 (MQ=60)
AACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTT > SRR4302534.70040/1‑94 (MQ=60)
AACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTT < SRR4302534.6410727/94‑1 (MQ=60)
AACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTT < SRR4302534.1966769/94‑1 (MQ=60)
AACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTT < SRR4302534.2574613/94‑1 (MQ=60)
ACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTG < SRR4302534.859172/94‑1 (MQ=60)
CATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGA < SRR4302534.2616818/94‑1 (MQ=60)
ATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGCTGAT > SRR4302534.17019/1‑94 (MQ=60)
TTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATA < SRR4302534.330880/94‑1 (MQ=60)
TTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAA > SRR4302534.5092945/1‑94 (MQ=60)
CACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACA < SRR4302534.1747255/94‑1 (MQ=60)
CACAGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCTCATCGTTGATAACA > SRR4302534.6324422/1‑94 (MQ=60)
ACCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACAT > SRR4302534.6253112/1‑94 (MQ=60)
CCGCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATT < SRR4302534.1974855/94‑1 (MQ=60)
CGCTGGTAACATCTACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCCCCATCGTAATGGATTGCGCATCGTTGATAACATTC < SRR4302534.4589016/94‑1 (MQ=60)
GCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCA < SRR4302534.6130226/94‑1 (MQ=60)
GCTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCA > SRR4302534.4567591/1‑94 (MQ=60)
CTGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGCTCGCGCATCGTTGATAACATTCAC > SRR4302534.4166870/1‑94 (MQ=60)
TGGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACA > SRR4302534.854643/1‑94 (MQ=60)
GGTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAA > SRR4302534.3669558/1‑94 (MQ=60)
GTAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAA > SRR4302534.6064723/1‑94 (MQ=60)
TAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAA > SRR4302534.2452390/1‑94 (MQ=60)
TAACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAA > SRR4302534.3431173/1‑94 (MQ=60)
AACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGCTAACATTCACAAAAA > SRR4302534.5641841/1‑94 (MQ=60)
AACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAA > SRR4302534.3916224/1‑94 (MQ=60)
AACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAA > SRR4302534.1867059/1‑94 (MQ=60)
AACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAA > SRR4302534.6422748/1‑94 (MQ=60)
AACAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAA > SRR4302534.1106794/1‑94 (MQ=60)
CAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGT > SRR4302534.3297538/1‑94 (MQ=60)
CAACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGT < SRR4302534.4437665/94‑1 (MQ=60)
AACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTG < SRR4302534.6169835/94‑1 (MQ=60)
ACGACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGA < SRR4302534.1680467/94‑1 (MQ=60)
CGCCCACCGTCCCCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGAC < SRR4302534.3962645/94‑1 (MQ=60)
GACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACC < SRR4302534.1769779/94‑1 (MQ=60)
GACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACC < SRR4302534.2579561/94‑1 (MQ=60)
GACCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACC > SRR4302534.2843760/1‑94 (MQ=60)
CCATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTC < SRR4302534.3774034/94‑1 (MQ=60)
CATCGTCACCTCGCTGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCA < SRR4302534.2833714/94‑1 (MQ=60)
CATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCA > SRR4302534.5916135/1‑94 (MQ=60)
CATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCA > SRR4302534.2516488/1‑94 (MQ=60)
CATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCA > SRR4302534.5716163/1‑94 (MQ=60)
ATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAAGATTCACAAAAAGTGACCTCAG < SRR4302534.6496255/94‑1 (MQ=60)
ATCGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAG < SRR4302534.1595890/94‑1 (MQ=60)
ACGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGC < SRR4302534.4016771/94‑1 (MQ=60)
CGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCA < SRR4302534.3620943/94‑1 (MQ=60)
CGTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCA > SRR4302534.1185925/1‑94 (MQ=60)
GTCACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCAC > SRR4302534.899217/1‑94 (MQ=60)
CACCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCACCG > SRR4302534.4554170/1‑94 (MQ=60)
CCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCACCGCG > SRR4302534.5919860/1‑94 (MQ=60)
CCTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCACCGCG < SRR4302534.219191/94‑1 (MQ=60)
CTCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCACCGCGC > SRR4302534.5264746/1‑94 (MQ=60)
TCGCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCACCGCGCG < SRR4302534.1359862/94‑1 (MQ=60)
GCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCACCGCGCGCC < SRR4302534.6312970/94‑1 (MQ=60)
GCGGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCACCGCGCGCC > SRR4302534.6255357/1‑94 (MQ=60)
GGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCACCGCGCGCCGT > SRR4302534.2311435/1‑94 (MQ=60)
GGGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCACCGCGCGCCGT > SRR4302534.4553306/1‑94 (MQ=60)
GGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCACCGCGCGCCGTC > SRR4302534.766977/1‑94 (MQ=60)
GGTTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAACACCGCGCGCCGTC > SRR4302534.5963885/1‑94 (MQ=60)
TTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCACCGCGCGCCGTCAG < SRR4302534.4415821/94‑1 (MQ=60)
TTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCACCGCGCGCCGTCAG < SRR4302534.2001973/94‑1 (MQ=60)
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GTAACCAGTGCTCACGATACCATTGTGGGATCAGCGACCAGAGTTGCTGCAACATTTCACCGCTGGTAACAACGACCATCGTCACCTCGCGGGCTTGCCAGCGCATCGCTTCTTCTGCACCATCGTAATGGATTGCGCATCGTTGATAACATTCACAAAAAGTGACCTCAGCACCGCGCGCCGTCAG > NC_000913/3986823‑3987009
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
