Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,994,771 |
A→G |
H291R (CAT→CGT) |
xerC → |
XerC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,994,771 | 0 | A | G | 99.6%
| 845.0
/ ‑4.8
| 240 | H291R (CAT→CGT) | xerC | XerC |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (117/122); total (117/123) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.28e-01 |
Only 100 of 246 total aligned reads displayed.
AGGAGCTGCTGGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTA > NC_000913/3994681‑3994860
|
aGGAGCTGCTGGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTc > 2:2845534/1‑93 (MQ=255)
gAGCTGCTGGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCa < 1:6296290/93‑1 (MQ=255)
gctgctGGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCAcg > 1:4757603/1‑93 (MQ=255)
ctgGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGcc < 2:4268718/93‑1 (MQ=255)
tgGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCa > 1:2619128/1‑93 (MQ=255)
gggTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCaa > 2:3720057/1‑93 (MQ=255)
gTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAAc > 1:1381454/1‑93 (MQ=255)
gTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAAc < 1:730968/93‑1 (MQ=255)
cATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACgg > 1:2836138/1‑93 (MQ=255)
aTGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACggg > 2:2712990/1‑93 (MQ=255)
gCCACCCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACggggg < 1:2677656/93‑1 (MQ=255)
ccAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGa > 2:4193885/1‑93 (MQ=255)
aaCCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGaaa > 1:3342436/1‑93 (MQ=255)
aCCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAaat < 1:2197852/93‑1 (MQ=255)
ccTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAaata < 1:5427181/93‑1 (MQ=255)
ccTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAaata > 2:5031950/1‑93 (MQ=255)
ctcCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATg > 1:6204098/1‑93 (MQ=255)
ctcCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATg > 2:5228564/1‑93 (MQ=255)
ctcCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATg < 2:3182424/93‑1 (MQ=255)
caccacGCAAATCTATACTCATCTTGATTTTCAACGCCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGt < 2:1864437/93‑1 (MQ=255)
caccacGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGt < 1:6080084/93‑1 (MQ=255)
caccacGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGt < 1:1001273/93‑1 (MQ=255)
accacGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGtt < 1:914534/93‑1 (MQ=255)
accacGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGtt < 1:3639142/93‑1 (MQ=255)
ccacGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGttt < 1:1278652/93‑1 (MQ=255)
ccacGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGttt < 1:2802555/93‑1 (MQ=255)
ccacGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAACGGGGGAAATAATGCGttt < 1:144471/93‑1 (MQ=255)
acGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGttttt > 2:4922533/1‑93 (MQ=255)
acGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGttttt > 2:4156045/1‑93 (MQ=255)
cAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTAcc > 2:1136234/1‑93 (MQ=255)
cAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTAcc < 2:785283/93‑1 (MQ=255)
aaaTCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCg < 2:383013/93‑1 (MQ=255)
aaaTCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCg > 2:886599/1‑93 (MQ=255)
aaTCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCgg > 2:2225355/1‑93 (MQ=255)
aTCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGc > 1:5007989/1‑93 (MQ=255)
tCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGcc < 1:2965698/93‑1 (MQ=255)
tCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGcc < 2:6292198/93‑1 (MQ=255)
cTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCt < 2:1424979/93‑1 (MQ=255)
taCTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTg > 1:4284961/1‑93 (MQ=255)
gcTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTgg < 1:1840293/92‑1 (MQ=255)
aCTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGACATAATGCGTTTTTACCGGGCTTTgg > 2:2917002/1‑93 (MQ=255)
aCTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTgg < 2:5188877/93‑1 (MQ=255)
aCTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTgg < 1:339164/93‑1 (MQ=255)
aCTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTgg < 2:5807001/93‑1 (MQ=255)
tCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTgggg > 1:5595424/1‑93 (MQ=255)
tCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTgggg > 2:5484757/1‑93 (MQ=255)
cATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGgc < 1:4268494/93‑1 (MQ=255)
cATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGgc > 1:2382546/1‑93 (MQ=255)
cATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGgc < 1:5088729/93‑1 (MQ=255)
tCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGgcgc < 1:167813/93‑1 (MQ=255)
tCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGgcgc < 2:1641566/93‑1 (MQ=255)
tCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGgcgc > 1:1977972/1‑93 (MQ=255)
cTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGACTTTGGGGCGCa > 1:834430/1‑93 (MQ=255)
ttGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCAt > 1:3167278/1‑93 (MQ=255)
tGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCAtc < 1:3872410/93‑1 (MQ=255)
gATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCAtct < 2:6110204/93‑1 (MQ=255)
aTTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCAtctc < 2:3704072/93‑1 (MQ=255)
cAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGgcgc < 2:568596/93‑1 (MQ=255)
cAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGgcgc < 1:5791711/93‑1 (MQ=255)
cAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGgcgc < 2:5941875/93‑1 (MQ=255)
cAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGgcgc < 2:4777043/93‑1 (MQ=255)
aaCACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCt > 1:4233148/1‑93 (MQ=255)
aaCACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCt > 2:4857907/1‑93 (MQ=255)
aaCACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCt > 2:1289082/1‑93 (MQ=255)
acacCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTc < 1:5948192/93‑1 (MQ=255)
acCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCAc > 1:5270977/1‑93 (MQ=255)
ccTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCAcc < 1:3536456/93‑1 (MQ=255)
ccTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCAcc < 1:2468752/93‑1 (MQ=255)
cTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCt > 1:3107743/1‑93 (MQ=255)
ttGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCtt > 2:2972164/1‑93 (MQ=255)
ttGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCtt > 2:1606999/1‑93 (MQ=255)
ttGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCtt < 2:6323949/93‑1 (MQ=255)
tGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCttt < 1:5784305/93‑1 (MQ=255)
tGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCttt < 2:2309089/93‑1 (MQ=255)
tGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCttt > 2:4447223/1‑93 (MQ=255)
gCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTg < 2:2830024/93‑1 (MQ=255)
ccTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGa > 1:4185432/1‑93 (MQ=255)
cTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATACGTTTTTACCGGCCTTTTGGGCGCATCTCGGCGCTCCCCttttcc > 2:4617151/1‑90 (MQ=255)
tCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGAcc < 2:5399414/93‑1 (MQ=255)
cGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCt > 2:2012525/1‑93 (MQ=255)
cGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCt < 1:98523/93‑1 (MQ=255)
tgtACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGga < 2:23363/93‑1 (MQ=255)
tgtACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGga < 2:5332071/93‑1 (MQ=255)
tgtACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGga < 1:5904216/93‑1 (MQ=255)
gtACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGgat < 1:2052116/93‑1 (MQ=255)
gtACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGgat < 1:1044576/93‑1 (MQ=255)
gATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATa < 2:2475882/93‑1 (MQ=255)
gATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATa > 1:803858/1‑93 (MQ=255)
gcggcgCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGAGCTGGATGATAccc > 2:3030245/1‑93 (MQ=255)
cgtcgcgTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCt < 1:3938109/90‑1 (MQ=255)
cggcgCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCt < 1:4047859/93‑1 (MQ=255)
cggcgCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCt > 1:1518044/1‑93 (MQ=255)
cggcgCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCt < 2:1206003/93‑1 (MQ=255)
ggcgCGTCCGCGCGCCAAACGGGGGACATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATGCCCtt < 2:4628054/93‑1 (MQ=255)
ggcgCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCtt > 2:3569019/1‑93 (MQ=255)
ggcgCGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCtt < 2:3339047/93‑1 (MQ=255)
gcgcGTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCttt > 1:4524298/1‑93 (MQ=255)
gcgcGTCCACGCGCCAAACGGGGGAAATAATGCGGTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGCTGATACCCttt > 1:6093120/1‑93 (MQ=255)
cgcgTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTGCCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTa < 1:1531580/93‑1 (MQ=255)
cgcgTCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTa < 1:2990228/93‑1 (MQ=255)
|
AGGAGCTGCTGGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAACGGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTA > NC_000913/3994681‑3994860
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGGAGCTGCTGGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGAT > NC_000913/3994681‑3994864
|
AGGAGCTGCTGGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCC < SRR4302534.2211784/94‑1 (MQ=60)
AGGAGCTGCTGGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCC > SRR4302534.5941911/1‑94 (MQ=60)
GGAGCTGCTGGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCA < SRR4302534.3989543/94‑1 (MQ=60)
GAGCTGCTGGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCAC < SRR4302534.6466587/94‑1 (MQ=60)
GAGCTGCTGGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCAC < SRR4302534.4495149/94‑1 (MQ=60)
GAGCTGCTGGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCAC < SRR4302534.5324992/94‑1 (MQ=60)
AGCTGCTGGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACG > SRR4302534.4886792/1‑94 (MQ=60)
GCTGCTGGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGC > SRR4302534.4225464/1‑94 (MQ=60)
TGCTGGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGC < SRR4302534.2082307/94‑1 (MQ=60)
TGCTGGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGC > SRR4302534.4810005/1‑94 (MQ=60)
GCTGTGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCC < SRR4302534.101209/94‑1 (MQ=60)
GCTGGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCC < SRR4302534.6283377/94‑1 (MQ=60)
CTGGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCA > SRR4302534.2688438/1‑94 (MQ=60)
CTGGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCA < SRR4302534.5762424/94‑1 (MQ=60)
TGGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAA < SRR4302534.4229313/94‑1 (MQ=60)
TGGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGCCCACGCGCCAA > SRR4302534.6254770/1‑94 (MQ=60)
TGGGTCATGCCAACCCCCCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAA < SRR4302534.5641112/94‑1 (MQ=60)
ggcgATGCCAACCTCTCAACCAAGCAAATCTATACTCATCTAGATTTTCAACACCTTGCCTCGGTGTACGATGGGGCGCGTCCACGCGCCAAAC < SRR4302534.6404871/90‑1 (MQ=60)
GGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAAC > SRR4302534.1417830/1‑94 (MQ=60)
GTCATGCCAACCTCTCCTCCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACG < SRR4302534.5868163/94‑1 (MQ=60)
GTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACG > SRR4302534.4367547/1‑94 (MQ=60)
GTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACG < SRR4302534.749029/94‑1 (MQ=60)
TCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGG > SRR4302534.2910650/1‑94 (MQ=60)
TCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGG > SRR4302534.2910649/1‑94 (MQ=60)
CATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGG > SRR4302534.3000404/1‑94 (MQ=60)
TGCCACCCTCTCCCCCCCGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGG < SRR4302534.3377743/94‑1 (MQ=60)
TGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGG < SRR4302534.1523110/94‑1 (MQ=60)
GCCACCCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGA < SRR4302534.2748445/94‑1 (MQ=60)
GCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGA < SRR4302534.4307545/94‑1 (MQ=60)
CCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAA > SRR4302534.552552/1‑94 (MQ=60)
CCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAA > SRR4302534.3997864/1‑94 (MQ=60)
CAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAA > SRR4302534.1559639/1‑94 (MQ=60)
CAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAA > SRR4302534.3431881/1‑94 (MQ=60)
AACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAAT > SRR4302534.1930871/1‑94 (MQ=60)
ACCTCTCCACCACGCAAATCTATCCTCATCTTGATTTTCAACGCCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATA < SRR4302534.829943/94‑1 (MQ=60)
ACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATA < SRR4302534.2256008/94‑1 (MQ=60)
ACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATA > SRR4302534.1283657/1‑94 (MQ=60)
CCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAA < SRR4302534.5573265/94‑1 (MQ=60)
TCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATG > SRR4302534.6372801/1‑94 (MQ=60)
TCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATG > SRR4302534.2929670/1‑94 (MQ=60)
TCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATG < SRR4302534.1838806/94‑1 (MQ=60)
TCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATG < SRR4302534.4389726/94‑1 (MQ=60)
CCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GT > SRR4302534.3273512/1‑94 (MQ=60)
CCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GT > SRR4302534.4512369/1‑94 (MQ=60)
CACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTT > SRR4302534.4350348/1‑94 (MQ=60)
CACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTT < SRR4302534.6245444/94‑1 (MQ=60)
CACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTT < SRR4302534.1026940/94‑1 (MQ=60)
ACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTT < SRR4302534.937790/94‑1 (MQ=60)
ACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTT < SRR4302534.3736947/94‑1 (MQ=60)
ACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTT < SRR4302534.6095283/94‑1 (MQ=60)
CCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTT < SRR4302534.2876258/94‑1 (MQ=60)
CCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTT > SRR4302534.3242061/1‑94 (MQ=60)
CCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTT < SRR4302534.1312310/94‑1 (MQ=60)
CCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTT > SRR4302534.2292300/1‑94 (MQ=60)
CCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAACGGGGGAAATAATGC‑GTTTT < SRR4302534.148244/94‑1 (MQ=60)
CACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTT < SRR4302534.5142979/94‑1 (MQ=60)
CACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTT > SRR4302534.1319196/1‑94 (MQ=60)
CACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTT > SRR4302534.1028454/1‑94 (MQ=60)
ACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTA < SRR4302534.3460538/94‑1 (MQ=60)
TAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCG < SRR4302534.4098649/94‑1 (MQ=60)
AAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGG < SRR4302534.2472224/94‑1 (MQ=60)
AATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGC > SRR4302534.5143351/1‑94 (MQ=60)
ATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCC < SRR4302534.956041/94‑1 (MQ=60)
ATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCC > SRR4302534.30671/1‑94 (MQ=60)
ATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCC > SRR4302534.5380409/1‑94 (MQ=60)
ATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCC > SRR4302534.6196513/1‑94 (MQ=60)
TCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCT < SRR4302534.3043368/94‑1 (MQ=60)
CTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTT > SRR4302534.6267908/1‑94 (MQ=60)
CTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTT > SRR4302534.6010091/1‑94 (MQ=60)
ATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTG > SRR4302534.4401013/1‑94 (MQ=60)
TACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGG < SRR4302534.2799750/94‑1 (MQ=60)
GCTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGG < SRR4302534.1888131/94‑1 (MQ=60)
ACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGG < SRR4302534.347842/94‑1 (MQ=60)
CTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGG > SRR4302534.4924705/1‑94 (MQ=60)
CTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGG > SRR4302534.5746723/1‑94 (MQ=60)
TCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGC > SRR4302534.2445857/1‑94 (MQ=60)
TCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGC < SRR4302534.2807491/94‑1 (MQ=60)
CATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCG < SRR4302534.5226068/94‑1 (MQ=60)
CATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCG < SRR4302534.4383844/94‑1 (MQ=60)
CATCTTGATTTTAAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCG < SRR4302534.3733836/94‑1 (MQ=60)
ATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGC > SRR4302534.2616423/1‑94 (MQ=60)
ATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGC > SRR4302534.2029757/1‑94 (MQ=60)
TCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCA < SRR4302534.172221/94‑1 (MQ=60)
TCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGACTTTGGGGCGCA > SRR4302534.855432/1‑94 (MQ=60)
CTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCAT < SRR4302534.3158288/94‑1 (MQ=60)
CTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCAT > SRR4302534.3250810/1‑94 (MQ=60)
CTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGG‑AATAATGCGGTTTTTCCCGGCCTTTGGGGgcaat > SRR4302534.738475/1‑89 (MQ=60)
TGATTTTCAACTCCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCT < SRR4302534.926504/94‑1 (MQ=60)
TGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCTCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCT < SRR4302534.1968775/94‑1 (MQ=60)
TGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCT < SRR4302534.3976388/94‑1 (MQ=60)
ATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCG > SRR4302534.842262/1‑94 (MQ=60)
TTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCG < SRR4302534.6213718/94‑1 (MQ=60)
TTCAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCG > SRR4302534.3621674/1‑94 (MQ=60)
CAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCT < SRR4302534.5948843/94‑1 (MQ=60)
CAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCT > SRR4302534.4347239/1‑94 (MQ=60)
CAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCT > SRR4302534.6491194/1‑94 (MQ=60)
CAACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCT > SRR4302534.6419170/1‑94 (MQ=60)
ACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCA < SRR4302534.6109694/94‑1 (MQ=60)
ACACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCA > SRR4302534.3873838/1‑94 (MQ=60)
CACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCAC > SRR4302534.5413353/1‑94 (MQ=60)
CACCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCAC > SRR4302534.675683/1‑94 (MQ=60)
CCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCT < SRR4302534.2534376/94‑1 (MQ=60)
CCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCT > SRR4302534.3189468/1‑94 (MQ=60)
CCTTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCT < SRR4302534.3631587/94‑1 (MQ=60)
CATTGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGAGCGCCTCTCGGCGCTCACCT > SRR4302534.5884543/1‑94 (MQ=60)
TGCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTG < SRR4302534.5941200/94‑1 (MQ=60)
GCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGA > SRR4302534.4298548/1‑94 (MQ=60)
GCCTCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCCTTGGGGCGCATCTCGGCGCTCACCTTTGA > SRR4302534.5861976/1‑94 (MQ=60)
CTCGGAGTACGATGCCGCCCGTCCACGCGCCAAACGGGGCAAATAAAGC‑GTCTCTACCTGCCTTTGGGGCGCATCTCGGCGCTCCCCTCTGACC > SRR4302534.2839991/1‑94 (MQ=32)
TCGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCT > SRR4302534.5182525/1‑94 (MQ=60)
CGGTGTAGGATGCGGCGCGGCCACTCGCCAAACGGGGGAACTAATGC‑GCTTTTACCCGACTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTG > SRR4302534.5503631/1‑94 (MQ=60)
CGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTG > SRR4302534.790224/1‑94 (MQ=60)
CGGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTG < SRR4302534.101155/94‑1 (MQ=60)
GGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGG > SRR4302534.6051402/1‑94 (MQ=60)
GGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGG > SRR4302534.139950/1‑94 (MQ=60)
GGTGTACGATGCGGCGCGTCCACGCGCCAAACGGGCGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGG < SRR4302534.964919/94‑1 (MQ=60)
TGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGAT < SRR4302534.6064521/94‑1 (MQ=60)
GGTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGAT < SRR4302534.2108217/94‑1 (MQ=60)
GTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATG < SRR4302534.2105738/94‑1 (MQ=60)
GTACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATG < SRR4302534.1071558/94‑1 (MQ=60)
ACGATGCGGCGCGTCCACGCGCCCAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTAGCCGCTCACCTTTGAtctcgatatt > SRR4302534.4495124/1‑84 (MQ=60)
ACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGAT > SRR4302534.1471948/1‑94 (MQ=60)
ACGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGAT < SRR4302534.2631120/94‑1 (MQ=60)
CGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATA > SRR4302534.824048/1‑94 (MQ=60)
CGATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATA < SRR4302534.35477/94‑1 (MQ=60)
GATGCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATTATAC > SRR4302534.3122514/1‑94 (MQ=60)
GCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCT > SRR4302534.1557920/1‑94 (MQ=60)
GCGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCT < SRR4302534.1689018/94‑1 (MQ=60)
CGTCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTT < SRR4302534.4043584/94‑1 (MQ=60)
CGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTT < SRR4302534.1505341/94‑1 (MQ=60)
CGGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTT < SRR4302534.4156418/94‑1 (MQ=60)
GGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTT > SRR4302534.4646855/1‑94 (MQ=60)
GGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTT > SRR4302534.2745060/1‑94 (MQ=60)
GGCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GGTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGCTGATACCCTTT > SRR4302534.6258811/1‑94 (MQ=60)
GCGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTA < SRR4302534.1697942/94‑1 (MQ=60)
CGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTGCCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTAC < SRR4302534.1571763/94‑1 (MQ=60)
CGCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTAC < SRR4302534.3068401/94‑1 (MQ=60)
GCGTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACG > SRR4302534.5161789/1‑94 (MQ=60)
GTCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGAT > SRR4302534.3216815/1‑94 (MQ=60)
|
AGGAGCTGCTGGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAACGGGGGAAATAATGC‑GTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGAT > NC_000913/3994681‑3994864
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
