Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,008,469 |
+G |
intergenic (+36/‑197) |
b4555 → / → yigM |
hypothetical protein/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,008,466 | 1 | . | G | 99.4%
| 540.7
/ ‑3.8
| 154 | intergenic (+33/‑200) | b4555/yigM | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (75/78); total (76/78) |
| Fisher's exact test for biased strand distribution p-value = 4.94e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 155 total aligned reads displayed.
GAACTGG‑CTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑AAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GAAGTGATTGGTACTAATGCCGACGAC > NC_000913/4008398‑4008551
|
aaaCTGGTCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACTGGATGACCGACGTCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATg < 2:5137555/92‑1 (MQ=255)
actggg‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATggg < 2:6238729/89‑1 (MQ=255)
actggg‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATggg > 2:2876262/5‑93 (MQ=255)
actggg‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATggg > 1:2061326/5‑93 (MQ=255)
ctggg‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGc > 2:3258484/4‑93 (MQ=255)
ctggg‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGc < 2:414326/90‑1 (MQ=255)
tggg‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCa < 1:4044542/91‑1 (MQ=255)
tggg‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCa > 1:2866698/3‑93 (MQ=255)
ggg‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAg > 2:2165022/2‑93 (MQ=255)
ggg‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAg > 1:4217619/2‑93 (MQ=255)
gg‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGt < 2:4212740/93‑1 (MQ=255)
g‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTg < 2:3894347/93‑1 (MQ=255)
cTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTgc < 2:6266855/93‑2 (MQ=255)
cTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGCAAG‑GCTGCATTATGGGCAGTgc > 1:2241773/1‑92 (MQ=255)
tACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTgcg > 1:1621121/1‑91 (MQ=255)
tACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTgcg > 1:2762028/1‑91 (MQ=255)
gcgtGAAGGATTGTATTGCGTTGGGTGACGGAATGAACGACGCCGAAATGCTGTCAATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCgcacc < 1:1656708/90‑1 (MQ=255)
gccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCgcacc > 1:5509161/3‑93 (MQ=255)
ccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCgcacca < 2:5886704/92‑1 (MQ=255)
ccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCgcacca > 1:1682782/2‑93 (MQ=255)
cTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAg < 1:2215785/93‑1 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGc > 1:2156490/1‑93 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGc < 2:440743/93‑1 (MQ=255)
gAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCg < 2:5212621/93‑1 (MQ=255)
gAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCg > 2:2799496/1‑93 (MQ=255)
aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTc < 2:2312465/93‑1 (MQ=255)
aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTc < 2:1387586/93‑1 (MQ=255)
aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTc < 1:4746228/93‑1 (MQ=255)
aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTc < 2:4358748/93‑1 (MQ=255)
ggATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCt < 2:6165831/93‑1 (MQ=255)
ggATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCt < 1:4802295/93‑1 (MQ=255)
ggATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCt < 2:1178316/93‑1 (MQ=255)
ggATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCt < 1:5708665/93‑1 (MQ=255)
tttggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCAt < 1:5381833/89‑1 (MQ=255)
tggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATcc < 1:3102204/91‑1 (MQ=255)
ggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATccc > 2:2321542/2‑93 (MQ=255)
gtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCg < 2:1706613/93‑1 (MQ=255)
gACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAg > 1:2927373/1‑93 (MQ=255)
cGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGcg > 2:606148/1‑92 (MQ=255)
cGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCt < 2:2663374/93‑1 (MQ=255)
cGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCt < 2:975712/93‑1 (MQ=255)
cGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCt > 1:6227029/1‑93 (MQ=255)
gggATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑g < 2:3208939/93‑1 (MQ=255)
gggATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑g > 1:4029805/1‑93 (MQ=255)
gggATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑g < 2:6035405/93‑1 (MQ=255)
gggATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑g > 1:4985754/1‑93 (MQ=255)
ggATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGGCCTTCATCCCGAGCT‑gg > 2:1857379/1‑92 (MQ=255)
ggATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑gg > 2:4387737/1‑92 (MQ=255)
aTGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑ggaa < 1:5912240/93‑4 (MQ=255)
aaCGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTg > 2:6162777/1‑93 (MQ=255)
aaCGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTg > 2:4176227/1‑93 (MQ=255)
aaCGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTg < 2:4770873/93‑1 (MQ=255)
acgacgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGa > 1:1306340/1‑93 (MQ=255)
acgacgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGa < 1:2412012/93‑1 (MQ=255)
gacgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAtt > 1:3019064/1‑93 (MQ=255)
gacgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAtt > 2:1748516/1‑93 (MQ=255)
gacgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGCGAtt > 2:675891/1‑93 (MQ=255)
acgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTg > 2:5834659/1‑93 (MQ=255)
acgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTg > 1:4063721/1‑93 (MQ=255)
cgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTgg > 1:3716215/1‑93 (MQ=255)
gCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGt < 2:5885363/93‑1 (MQ=255)
ccGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTa < 1:5983823/93‑1 (MQ=255)
ccGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTa > 2:3383752/1‑93 (MQ=255)
cGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTAc > 1:4331359/1‑93 (MQ=255)
cGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTAc < 1:4649788/93‑1 (MQ=255)
gAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACt > 1:1971070/1‑93 (MQ=255)
gAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACt < 2:3161757/93‑1 (MQ=255)
gAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACt > 1:3349964/1‑93 (MQ=255)
gAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACt > 2:5126113/1‑93 (MQ=255)
gAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACt > 2:4819552/1‑93 (MQ=255)
aaaTGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTa < 1:237725/93‑1 (MQ=255)
aaaTGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTa > 2:3471036/1‑93 (MQ=255)
aaTGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTaa < 2:1260781/93‑1 (MQ=255)
aaTGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTaa > 2:2833463/1‑93 (MQ=255)
aaTGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTaa > 1:3449673/1‑93 (MQ=255)
aaTGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTaa > 2:5664663/1‑93 (MQ=255)
aaTGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTaa > 1:3853885/1‑93 (MQ=255)
aTGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAAt < 2:38543/93‑1 (MQ=255)
aTGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAAt > 1:52960/1‑93 (MQ=255)
aTGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAAt < 2:4115529/93‑1 (MQ=255)
aTGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAAt > 1:4072657/1‑93 (MQ=255)
gCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGc < 1:1050943/93‑1 (MQ=255)
gCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGc > 1:1587885/1‑93 (MQ=255)
gCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGc < 2:3063743/93‑1 (MQ=255)
cTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGcc < 2:2061326/93‑1 (MQ=255)
cTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGcc > 1:4874260/1‑93 (MQ=255)
cTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGcc < 2:2232111/93‑1 (MQ=255)
cTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGcc < 1:4084567/93‑1 (MQ=255)
cTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGcc < 1:5324798/93‑1 (MQ=255)
tGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcg < 2:2879411/93‑1 (MQ=255)
tGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcg > 2:5167090/1‑93 (MQ=255)
tGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcg < 1:6470595/93‑1 (MQ=255)
tGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcg > 1:1407707/1‑93 (MQ=255)
gTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcga > 1:2757252/1‑93 (MQ=255)
tCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgac > 2:3679439/1‑93 (MQ=255)
tCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgac > 2:678886/1‑93 (MQ=255)
gATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgacga < 2:5894190/93‑1 (MQ=255)
gATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgacga < 1:5967797/93‑1 (MQ=255)
gATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGGGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTCATGCcgacga > 1:1448784/1‑93 (MQ=255)
aTGGC‑GGGT‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGAGCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCgacgac < 1:3603057/93‑1 (MQ=255)
|
GAACTGG‑CTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑AAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GAAGTGATTGGTACTAATGCCGACGAC > NC_000913/4008398‑4008551
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGCGCTGGAAGGCTGGCGAACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑AAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GAAGTGATTGGTACTAATGCCGACGACGCGGTGCC > NC_000913/4008381‑4008559
|
tggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG > SRR4302534.2866349/24‑94 (MQ=57)
tggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG > SRR4302534.1281798/24‑94 (MQ=57)
tggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG < SRR4302534.4676963/71‑1 (MQ=57)
ggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑G > SRR4302534.3634461/23‑94 (MQ=56)
gaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑GA > SRR4302534.4127271/22‑94 (MQ=56)
aagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑GAA < SRR4302534.1169486/74‑1 (MQ=55)
aagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑GAA < SRR4302534.1336621/74‑1 (MQ=55)
agcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAA < SRR4302534.724895/75‑1 (MQ=54)
gcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAA‑G < SRR4302534.5495819/76‑1 (MQ=53)
gtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggct < SRR4302534.128203/79‑9 (MQ=57)
tggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggctg < SRR4302534.3879762/80‑10 (MQ=57)
cgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCAT > SRR4302534.93156/12‑94 (MQ=49)
gaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATT > SRR4302534.6188388/11‑94 (MQ=49)
gaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATT > SRR4302534.1179196/11‑94 (MQ=49)
gaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATT > SRR4302534.3152769/11‑94 (MQ=49)
aagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTA > SRR4302534.135347/10‑94 (MQ=48)
agaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTAT > SRR4302534.5535424/9‑94 (MQ=48)
agaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTAT > SRR4302534.1117497/9‑94 (MQ=48)
aaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGG < SRR4302534.3347287/88‑1 (MQ=51)
AACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGG > SRR4302534.2115228/1‑94 (MQ=50)
ctgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCA > SRR4302534.2941981/4‑94 (MQ=57)
tgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAG < SRR4302534.4153009/92‑1 (MQ=58)
tgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAG > SRR4302534.4331355/3‑94 (MQ=58)
GGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTG < SRR4302534.9300/94‑1 (MQ=60)
GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGCAAG‑GCTGCATTATGGGCAGTGC > SRR4302534.2301180/1‑94 (MQ=60)
CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGcg > SRR4302534.2217226/1‑92 (MQ=60)
CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGcg < SRR4302534.1349270/94‑3 (MQ=60)
CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGcg > SRR4302534.2834767/1‑92 (MQ=60)
CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGcg > SRR4302534.1880159/1‑92 (MQ=60)
CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGcg > SRR4302534.1663414/1‑92 (MQ=60)
TACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGcgc < SRR4302534.5019250/94‑4 (MQ=60)
TACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGcgc > SRR4302534.3830216/1‑91 (MQ=60)
TACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGcgc > SRR4302534.5254671/1‑91 (MQ=60)
ACAGCCTGAAGGATTGTATTGCGTTTGGTGAGGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGcgca > SRR4302534.140335/1‑90 (MQ=50)
CAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGcgcac > SRR4302534.5463609/1‑89 (MQ=60)
agcCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACC > SRR4302534.2659947/4‑94 (MQ=60)
agcCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACC > SRR4302534.5657772/4‑94 (MQ=60)
gcgTGAAGGATTGTATTGCGTTGGGTGACGGAATGAACGACGCCGAAATGCTGTCAATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCA < SRR4302534.1699882/91‑1 (MQ=37)
gcCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCA > SRR4302534.1726551/3‑94 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGcgcaccaga < SRR4302534.2274463/94‑10 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGC > SRR4302534.2213419/1‑94 (MQ=60)
AGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCT < SRR4302534.4875070/94‑1 (MQ=57)
AGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCT > SRR4302534.1667254/1‑94 (MQ=57)
AGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCT < SRR4302534.3768462/94‑1 (MQ=57)
GGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTG < SRR4302534.5863326/94‑1 (MQ=60)
GGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTG < SRR4302534.4932693/94‑1 (MQ=60)
GGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTG > SRR4302534.3928917/1‑94 (MQ=60)
TTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAA > SRR4302534.779915/1‑94 (MQ=60)
gtattgcgtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGA > SRR4302534.969933/13‑94 (MQ=60)
gtattgcgtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGA > SRR4302534.6032154/13‑94 (MQ=60)
TTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCT < SRR4302534.4827236/94‑1 (MQ=60)
TTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCT < SRR4302534.5009941/94‑1 (MQ=60)
TTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCT < SRR4302534.1155258/94‑1 (MQ=60)
TGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTT < SRR4302534.4973369/94‑1 (MQ=60)
TGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTT < SRR4302534.4798702/94‑1 (MQ=60)
GCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTC < SRR4302534.2778805/94‑1 (MQ=60)
CGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCA < SRR4302534.6172232/94‑1 (MQ=60)
CGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCA > SRR4302534.646002/1‑94 (MQ=60)
tttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATC < SRR4302534.5526803/90‑1 (MQ=60)
tttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATC < SRR4302534.4184323/90‑1 (MQ=60)
TG‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCC > SRR4302534.3073533/1‑94 (MQ=60)
TG‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCC < SRR4302534.3183809/94‑1 (MQ=60)
GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGA < SRR4302534.6097252/94‑1 (MQ=60)
TGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG > SRR4302534.3004236/1‑94 (MQ=60)
TGACGAGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG < SRR4302534.2377994/94‑1 (MQ=60)
GACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC < SRR4302534.4919994/94‑1 (MQ=60)
ACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT > SRR4302534.6396086/1‑94 (MQ=60)
CGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑G > SRR4302534.4137848/1‑94 (MQ=60)
CGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑G > SRR4302534.5120675/1‑94 (MQ=60)
GGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GG < SRR4302534.5778724/94‑1 (MQ=60)
GGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GG > SRR4302534.1586773/1‑94 (MQ=60)
GGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GGA > SRR4302534.413263/1‑94 (MQ=60)
ATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAG < SRR4302534.6072789/94‑1 (MQ=60)
TGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGT > SRR4302534.4101236/1‑94 (MQ=60)
AACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGA > SRR4302534.1340804/1‑94 (MQ=60)
ACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAT < SRR4302534.2476150/94‑1 (MQ=60)
CGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATT > SRR4302534.3098112/1‑94 (MQ=60)
GACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTG < SRR4302534.4566139/94‑1 (MQ=60)
GACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTG > SRR4302534.4172744/1‑94 (MQ=60)
ACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GGTGCAATATGGGCAGTGCGCACCAGCGTCTGAAACACCTTCATCCCGAGgtggaagtcaatgg > SRR4302534.1717783/1‑80 (MQ=39)
ACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGG > SRR4302534.3816131/1‑94 (MQ=60)
ACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGG < SRR4302534.215487/94‑1 (MQ=60)
CGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGT < SRR4302534.5511102/94‑1 (MQ=60)
CCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTAC < SRR4302534.6146366/94‑1 (MQ=60)
CCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTAC > SRR4302534.4448491/1‑94 (MQ=60)
CCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTAC < SRR4302534.4159739/94‑1 (MQ=60)
CGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTCTGGGCAATCCGCCCCAGCGTCTGAAAGACCTTCATCTCGAGCTGGAAGTGATTGGTACT > SRR4302534.5461671/1‑94 (MQ=26)
CGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACT < SRR4302534.4776016/94‑1 (MQ=60)
CGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACT > SRR4302534.6212755/1‑94 (MQ=60)
CGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACT > SRR4302534.2022668/1‑94 (MQ=60)
CGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACT > SRR4302534.3439663/1‑94 (MQ=60)
CGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGCGCGCACTAGCGTCTGAAAGACCTTTATCCCCAGCTGGTAGTGCTTGGTACT > SRR4302534.1665812/1‑94 (MQ=23)
GAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTA > SRR4302534.3441984/1‑94 (MQ=60)
AAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAA > SRR4302534.3542398/1‑94 (MQ=60)
AAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAA < SRR4302534.243944/94‑1 (MQ=60)
AAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAA > SRR4302534.3957355/1‑94 (MQ=60)
AATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAAT > SRR4302534.54380/1‑94 (MQ=60)
AATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAAT > SRR4302534.4181944/1‑94 (MQ=60)
ATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATG > SRR4302534.3121531/1‑94 (MQ=60)
ATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATG > SRR4302534.4258082/1‑94 (MQ=60)
TGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGC > SRR4302534.1629423/1‑94 (MQ=60)
GCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCC < SRR4302534.1078154/94‑1 (MQ=60)
GCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCC > SRR4302534.5006458/1‑94 (MQ=60)
CTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCG > SRR4302534.1444730/1‑94 (MQ=60)
CTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCG < SRR4302534.4194240/94‑1 (MQ=60)
CTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCG < SRR4302534.5468422/94‑1 (MQ=60)
TGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGA < SRR4302534.6644884/94‑1 (MQ=60)
TGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGA > SRR4302534.2829878/1‑94 (MQ=60)
CGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGGGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTCATGCCGACGA > SRR4302534.1486913/1‑94 (MQ=57)
GATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGAC < SRR4302534.6129864/94‑1 (MQ=60)
GATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGAC < SRR4302534.286975/94‑1 (MQ=60)
ATGGC‑GGGTAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGAGCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACG < SRR4302534.3699943/94‑1 (MQ=60)
TGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGC > SRR4302534.2881431/1‑94 (MQ=60)
GG‑GGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGT < SRR4302534.2772061/94‑1 (MQ=60)
GGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGC > SRR4302534.2583954/1‑94 (MQ=60)
GG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCC < SRR4302534.5921882/94‑1 (MQ=60)
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TGCGCTGGAAGGCTGGCGAACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑AAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GAAGTGATTGGTACTAATGCCGACGACGCGGTGCC > NC_000913/4008381‑4008559
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
