Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,013,176	C→G	G182R (GGA→CGA)	ysgA ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,013,176	0	C	G	100.0%	847.4 / NA	243	G182R (GGA→CGA)	ysgA	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (137/106); total (137/106)

Only 100 of 246 total aligned reads displayed.

TCGCATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCCG‑GCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCAC  >  NC_000913/4013087‑4013260

     ttAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTa                                                                               >  2:2059784/1‑93 (MQ=255)

      tAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTaa                                                                              <  1:1781626/93‑1 (MQ=255)

      tAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTaa                                                                              >  1:1841372/1‑93 (MQ=255)

       agcagcCCGCAGCTCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAg                                                                             <  2:182977/93‑1 (MQ=255)

         cagcCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGAt                                                                           <  2:2924047/93‑1 (MQ=255)

         cagcCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGAt                                                                           <  2:3630632/93‑1 (MQ=255)

          cgcCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATc                                                                          <  1:6049691/92‑1 (MQ=255)

           gcCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCg                                                                         <  1:5028668/93‑1 (MQ=255)

           gcCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCg                                                                         >  2:2618812/1‑93 (MQ=255)

           gcCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCg                                                                         >  1:3802832/1‑93 (MQ=255)

           gcCCACAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCg                                                                         >  2:5236154/1‑93 (MQ=255)

            cccGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCgg                                                                        <  2:4048045/93‑1 (MQ=255)

             ccGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGt                                                                       <  1:5137846/93‑1 (MQ=255)

             ccGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGt                                                                       <  2:3223886/93‑1 (MQ=255)

             ccGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGt                                                                       <  2:3487461/93‑1 (MQ=255)

             ccGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGt                                                                       <  1:3094761/93‑1 (MQ=255)

             ccGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGt                                                                       >  2:4956260/1‑93 (MQ=255)

             ccGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGt                                                                       <  1:2558394/93‑1 (MQ=255)

              cGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGtt                                                                      <  2:5446975/93‑1 (MQ=255)

              cGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGtt                                                                      <  2:4617261/93‑1 (MQ=255)

              cGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGtt                                                                      <  1:6337419/93‑1 (MQ=255)

              cGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGtt                                                                      >  2:2423409/1‑93 (MQ=255)

               gCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTg                                                                     >  1:5456562/1‑93 (MQ=255)

               gCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTg                                                                     >  2:4151748/1‑93 (MQ=255)

               gCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGACGAGAATCGGCGCGTTAAGATCGGTTg                                                                     >  1:3470928/1‑93 (MQ=255)

                  gcgcCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGa                                                                  >  1:2695827/1‑93 (MQ=255)

                  gcgcCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGa                                                                  >  2:4214890/1‑93 (MQ=255)

                  gcgcCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGa                                                                  >  2:2703640/1‑93 (MQ=255)

                  gcgcCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGa                                                                  <  1:5945880/93‑1 (MQ=255)

                   cgcCTGTCGTATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGat                                                                 <  1:4365816/93‑1 (MQ=255)

                   cgcCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGat                                                                 >  1:4468284/1‑93 (MQ=255)

                     ccTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGatat                                                               >  1:2459920/1‑93 (MQ=255)

                      cTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATc                                                              >  1:3325700/1‑93 (MQ=255)

                      cTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATc                                                              <  1:1404394/93‑1 (MQ=255)

                      cTGGCGCATGGATTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATc                                                              >  1:1646554/1‑93 (MQ=255)

                       tGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCa                                                             >  1:2076210/1‑93 (MQ=255)

                        ggCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCaa                                                            >  2:3595277/1‑93 (MQ=255)

                          cgcATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACa                                                          <  1:4638162/93‑1 (MQ=255)

                           gcATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAg                                                         >  1:5936828/1‑93 (MQ=255)

                           gcATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGACGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAg                                                         >  1:2849386/1‑93 (MQ=255)

                             aTGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGgt                                                       <  1:1052970/93‑1 (MQ=255)

                             aTGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGgt                                                       >  2:3404331/1‑93 (MQ=255)

                             aTGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGgt                                                       <  1:3515994/93‑1 (MQ=255)

                              tGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGgtt                                                      <  2:3153052/93‑1 (MQ=255)

                                gTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAtgttgt                                                    <  1:5370540/93‑1 (MQ=255)

                                gTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGgttgt                                                    <  2:3899543/93‑1 (MQ=255)

                                gTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGgttgt                                                    <  1:6089871/93‑1 (MQ=255)

                                 tttCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGgttgtt                                                   <  1:4745092/93‑1 (MQ=255)

                                   tCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTc                                                 <  1:5773277/93‑1 (MQ=255)

                                   tCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTc                                                 <  1:2967143/93‑1 (MQ=255)

                                    cAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCg                                                >  2:2264128/1‑93 (MQ=255)

                                    cAACGCTCTCCTGCGCAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCg                                                <  2:5657544/93‑1 (MQ=255)

                                      aCGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGt                                              <  2:1355096/93‑1 (MQ=255)

                                       cGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTg                                             <  1:106355/93‑1 (MQ=255)

                                        gCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGa                                            >  2:5344104/1‑93 (MQ=255)

                                        gCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGa                                            >  1:844644/1‑93 (MQ=255)

                                           ctcCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAAtt                                         >  2:760246/1‑93 (MQ=255)

                                            tcCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTc                                        <  1:2422529/93‑1 (MQ=255)

                                              cTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAg                                      >  2:4386090/1‑93 (MQ=255)

                                              cTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAg                                      >  2:6324580/1‑93 (MQ=255)

                                                  ggAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGAc                                  <  1:3592620/93‑1 (MQ=255)

                                                   gAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACt                                 >  1:161960/1‑93 (MQ=255)

                                                   gAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACt                                 >  2:3651780/1‑93 (MQ=255)

                                                   gAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACt                                 <  2:6246962/93‑1 (MQ=255)

                                                    aaTGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACtt                                <  1:1475315/93‑1 (MQ=255)

                                                      tGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGt                              <  1:412984/93‑1 (MQ=255)

                                                       gCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTc                             <  2:472196/93‑1 (MQ=255)

                                                       gCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTc                             >  1:548524/1‑93 (MQ=255)

                                                          gTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGcc                          >  1:376186/1‑93 (MQ=255)

                                                           ttATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGccc                         >  1:4552266/1‑93 (MQ=255)

                                                            tATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCg                        >  1:6183228/1‑93 (MQ=255)

                                                            tATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCg                        >  2:4013428/1‑93 (MQ=255)

                                                              tCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTc                      <  1:4037317/93‑1 (MQ=255)

                                                              tCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTc                      >  1:1555100/1‑93 (MQ=255)

                                                                cTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAg                    >  2:2474996/1‑93 (MQ=255)

                                                                cTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAg                    >  2:1516857/1‑93 (MQ=255)

                                                                 tGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGt                   >  1:3910119/1‑93 (MQ=255)

                                                                 tGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGt                   <  1:5411909/93‑1 (MQ=255)

                                                                  gACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGtt                  <  2:377903/93‑1 (MQ=255)

                                                                  gACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGtt                  <  1:807895/93‑1 (MQ=255)

                                                                  gACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGtt                  <  1:2125894/93‑1 (MQ=255)

                                                                  gACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGtt                  >  1:1354385/1‑93 (MQ=255)

                                                                   accaccATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCTGTGAATTCAGCGACTTGTCGCCCGTCAGttt                 >  1:4001634/1‑93 (MQ=255)

                                                                   accaccATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGttt                 <  2:215494/93‑1 (MQ=255)

                                                                    ccaccaTATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTg                >  1:5852523/1‑93 (MQ=255)

                                                                    ccaccaTATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGCTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTg                >  1:5570944/1‑93 (MQ=255)

                                                                     caccaTATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGc               >  2:596420/1‑93 (MQ=255)

                                                                     caccaTATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGc               >  2:1767567/1‑93 (MQ=255)

                                                                     caccaTATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGc               >  1:6371078/1‑93 (MQ=255)

                                                                      accaTATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGcc              >  1:1925831/1‑93 (MQ=255)

                                                                       ccaTATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCg             >  2:6135067/1‑93 (MQ=255)

                                                                        caTATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGt            >  1:1262616/1‑93 (MQ=255)

                                                                         atatAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTa           >  2:864199/1‑93 (MQ=255)

                                                                          tataAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTAc          >  1:4844713/1‑93 (MQ=255)

                                                                          tataAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTAc          <  1:5614963/93‑1 (MQ=255)

                                                                           ataAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTAcc         >  1:526473/1‑93 (MQ=255)

                                                                            taAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCa        >  2:6147211/1‑93 (MQ=255)

                                                                             aaGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCAc       <  2:2997189/93‑1 (MQ=255)

                                                                              aGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACg      >  1:3189957/1‑93 (MQ=255)

                                                                               gCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGc     >  1:3390355/1‑93 (MQ=255)

TCGCATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCCG‑GCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCAC  >  NC_000913/4013087‑4013260

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCTTTCGCATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCCG‑GCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCACTG  >  NC_000913/4013083‑4013262

GCTTTCGCATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCG                                                                                         <  SRR4302534.2192968/94‑1 (MQ=60)

GCTTTCGCATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCG                                                                                         <  SRR4302534.5442376/94‑1 (MQ=60)

GCTTTCGCATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCGCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCG                                                                                         <  SRR4302534.4177040/94‑1 (MQ=60)

 CTTTCGCATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGG                                                                                        >  SRR4302534.3835432/1‑94 (MQ=60)

  TTTCGCATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAAT‑CG‑GC                                                                                     <  SRR4302534.5347210/94‑1 (MQ=60)

   tccgaATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAAT‑CG‑GCG                                                                                    <  SRR4302534.6178645/89‑1 (MQ=60)

        ATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGACGAGAATCGGCGCGTTA                                                                                 >  SRR4302534.5976054/1‑94 (MQ=60)

         TTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAA                                                                                >  SRR4302534.1889231/1‑94 (MQ=60)

          TAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAG                                                                               <  SRR4302534.1827885/94‑1 (MQ=60)

           AGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGA                                                                              <  SRR4302534.5157160/94‑1 (MQ=60)

             CAGCCCGTAGCGCCTGGCGCATGGTTGCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCGCCAGATAAGCCGAGAATCGGCGCGTTAAGATC                                                                            <  SRR4302534.1110103/94‑1 (MQ=60)

             CAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATC                                                                            <  SRR4302534.40662/94‑1 (MQ=60)

             CAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATC                                                                            >  SRR4302534.5575004/1‑94 (MQ=60)

             CAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGACGAGAATCGGCGCGTTAAGATC                                                                            >  SRR4302534.1105426/1‑94 (MQ=60)

              CGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCG                                                                           <  SRR4302534.6214172/94‑1 (MQ=60)

              AGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCG                                                                           >  SRR4302534.3380886/1‑94 (MQ=60)

              AGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCG                                                                           >  SRR4302534.3904941/1‑94 (MQ=60)

               GCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGG                                                                          <  SRR4302534.1698449/94‑1 (MQ=60)

               GCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGG                                                                          >  SRR4302534.4130309/1‑94 (MQ=60)

               GCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGA                                                                          <  SRR4302534.5164489/94‑1 (MQ=60)

                CCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGT                                                                         <  SRR4302534.1713048/94‑1 (MQ=60)

                 CCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTT                                                                        <  SRR4302534.3176170/94‑1 (MQ=60)

                 CCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTT                                                                        <  SRR4302534.2626207/94‑1 (MQ=60)

                 CCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTT                                                                        <  SRR4302534.5276524/94‑1 (MQ=60)

                  CGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTG                                                                       <  SRR4302534.6508614/94‑1 (MQ=60)

                  CGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTG                                                                       >  SRR4302534.5603597/1‑94 (MQ=60)

                  CGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTG                                                                       >  SRR4302534.4703537/1‑94 (MQ=60)

                  CGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGACGAGAATCGGCGCGTTAAGATCGGTTG                                                                       >  SRR4302534.3564215/1‑94 (MQ=60)

                   GCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGC                                                                      >  SRR4302534.574324/1‑94 (MQ=60)

                    CAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCG                                                                     >  SRR4302534.1940726/1‑94 (MQ=60)

                    CAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCG                                                                     >  SRR4302534.3013216/1‑94 (MQ=60)

                    CAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGACGAGAATCGGCGCGTTAAGATCGGTTGCG                                                                     >  SRR4302534.4874395/1‑94 (MQ=60)

                     AGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGA                                                                    >  SRR4302534.2767057/1‑94 (MQ=60)

                     AGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGA                                                                    >  SRR4302534.5927332/1‑94 (MQ=60)

                     AGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGA                                                                    >  SRR4302534.4667034/1‑94 (MQ=60)

                     AGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGA                                                                    >  SRR4302534.5595781/1‑94 (MQ=60)

                      GCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGAT                                                                   <  SRR4302534.6107320/94‑1 (MQ=60)

                      GCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGAT                                                                   >  SRR4302534.4589121/1‑94 (MQ=60)

                      GCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGAT                                                                   <  SRR4302534.6172959/94‑1 (MQ=60)

                       CGCCTGTCGTATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATA                                                                  <  SRR4302534.4483514/94‑1 (MQ=60)

                       CGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATA                                                                  <  SRR4302534.4483513/94‑1 (MQ=60)

                       CGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATA                                                                  >  SRR4302534.3701584/1‑94 (MQ=60)

                        GCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATAT                                                                 >  SRR4302534.2525270/1‑94 (MQ=60)

                         CCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATC                                                                >  SRR4302534.3414644/1‑94 (MQ=60)

                         CCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATC                                                                >  SRR4302534.3093972/1‑94 (MQ=60)

                         CCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATA                                                                >  SRR4302534.3541126/1‑94 (MQ=60)

                         CCTGGCGCATGGATTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATC                                                                >  SRR4302534.1689474/1‑94 (MQ=60)

                          CTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCA                                                               <  SRR4302534.1441327/94‑1 (MQ=60)

                          CTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCA                                                               >  SRR4302534.2598574/1‑94 (MQ=60)

                          CTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCA                                                               <  SRR4302534.2505911/94‑1 (MQ=60)

                          CTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCA                                                               >  SRR4302534.2130564/1‑94 (MQ=60)

                           TGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAA                                                              >  SRR4302534.5721057/1‑94 (MQ=60)

                           TGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAA                                                              >  SRR4302534.3561273/1‑94 (MQ=60)

                            GGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAAC                                                             >  SRR4302534.5228870/1‑94 (MQ=60)

                              CGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAG                                                           <  SRR4302534.4764010/94‑1 (MQ=60)

                              CGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAG                                                           >  SRR4302534.2566840/1‑94 (MQ=60)

                              CGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAG                                                           >  SRR4302534.6098039/1‑94 (MQ=60)

                              CGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGACGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAG                                                           >  SRR4302534.2924237/1‑94 (MQ=60)

                                CATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGT                                                         <  SRR4302534.3583286/94‑1 (MQ=60)

                                 ATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTT                                                        <  SRR4302534.3610568/94‑1 (MQ=60)

                                 ATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTT                                                        <  SRR4302534.1080229/94‑1 (MQ=60)

                                 ATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTT                                                        <  SRR4302534.2856946/94‑1 (MQ=60)

                                 ATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTT                                                        <  SRR4302534.1320261/94‑1 (MQ=60)

                                 ATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTT                                                        >  SRR4302534.2392243/1‑94 (MQ=60)

                                  TGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTG                                                       >  SRR4302534.1388404/1‑94 (MQ=60)

                                    GTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACATGTTGTT                                                     <  SRR4302534.5515260/94‑1 (MQ=60)

                                    GTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTT                                                     <  SRR4302534.6255483/94‑1 (MQ=60)

                                     TTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTT                                                    <  SRR4302534.4873903/94‑1 (MQ=60)

                                     TTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTT                                                    <  SRR4302534.6264049/94‑1 (MQ=60)

                                     TTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTT                                                    <  SRR4302534.1622146/94‑1 (MQ=60)

                                      TTCAACGCTCTCCTGCGGAACGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTC                                                   >  SRR4302534.6484139/1‑94 (MQ=60)

                                       TCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCG                                                  <  SRR4302534.3044848/94‑1 (MQ=60)

                                       TCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCG                                                  <  SRR4302534.5929894/94‑1 (MQ=60)

                                        CAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTAGG                                                 >  SRR4302534.3083463/1‑94 (MQ=60)

                                          ACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTG                                               <  SRR4302534.2851630/94‑1 (MQ=60)

                                           CGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGA                                              >  SRR4302534.865929/1‑94 (MQ=60)

                                           CGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGA                                              <  SRR4302534.109197/94‑1 (MQ=60)

                                           CGCTCTCCTGCGGAATGCTGTTATACTGACCAACATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGA                                              >  SRR4302534.3208044/1‑94 (MQ=60)

                                            GCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAA                                             <  SRR4302534.3341875/94‑1 (MQ=60)

                                            GCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAA                                             >  SRR4302534.1677024/1‑94 (MQ=60)

                                             CTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAAT                                            >  SRR4302534.1415570/1‑94 (MQ=60)

                                              TCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATT                                           >  SRR4302534.3624256/1‑94 (MQ=60)

                                              TCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATT                                           <  SRR4302534.1517356/94‑1 (MQ=60)

                                               CTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTC                                          <  SRR4302534.6242693/94‑1 (MQ=60)

                                               CTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTC                                          >  SRR4302534.1504305/1‑94 (MQ=60)

                                               CTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTC                                          >  SRR4302534.3875684/1‑94 (MQ=60)

                                                TCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCA                                         <  SRR4302534.2486949/94‑1 (MQ=60)

                                                TCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCA                                         >  SRR4302534.2184159/1‑94 (MQ=60)

                                                TCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCA                                         >  SRR4302534.6521968/1‑94 (MQ=60)

                                                TCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCA                                         >  SRR4302534.2063586/1‑94 (MQ=60)

                                                 CCTGCGGATTGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAG                                        <  SRR4302534.165534/94‑1 (MQ=60)

                                                 CCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAG                                        <  SRR4302534.1914579/94‑1 (MQ=60)

                                                   TGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCG                                      <  SRR4302534.2738894/94‑1 (MQ=60)

                                                     CGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGAC                                    >  SRR4302534.6543288/1‑94 (MQ=60)

                                                      GGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACT                                   <  SRR4302534.5481736/94‑1 (MQ=60)

                                                      GGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACT                                   >  SRR4302534.166199/1‑94 (MQ=60)

                                                      GGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACT                                   <  SRR4302534.3689249/94‑1 (MQ=60)

                                                        AATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTG                                 <  SRR4302534.6018580/94‑1 (MQ=60)

                                                        AATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTG                                 <  SRR4302534.1088692/94‑1 (MQ=60)

                                                        AATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTG                                 <  SRR4302534.1456651/94‑1 (MQ=60)

                                                        AATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTG                                 <  SRR4302534.1514119/94‑1 (MQ=60)

                                                          TGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTC                               >  SRR4302534.562055/1‑94 (MQ=60)

                                                          TGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTC                               <  SRR4302534.3429095/94‑1 (MQ=60)

                                                          TGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTC                               <  SRR4302534.423530/94‑1 (MQ=60)

                                                           GCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCG                              >  SRR4302534.518722/1‑94 (MQ=60)

                                                             TGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCC                            >  SRR4302534.385799/1‑94 (MQ=60)

                                                             TGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCC                            <  SRR4302534.6106191/94‑1 (MQ=60)

                                                              GTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCC                           >  SRR4302534.4675665/1‑94 (MQ=60)

                                                               TTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCG                          >  SRR4302534.6351523/1‑94 (MQ=60)

                                                                 ATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTC                        <  SRR4302534.4633054/94‑1 (MQ=60)

                                                                 ATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTC                        >  SRR4302534.1595824/1‑94 (MQ=60)

                                                                 ATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTC                        >  SRR4302534.4791706/1‑94 (MQ=60)

                                                                 ATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTC                        >  SRR4302534.4804091/1‑94 (MQ=60)

                                                                  TCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCA                       >  SRR4302534.5508910/1‑94 (MQ=60)

                                                                  TCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCA                       <  SRR4302534.4145560/94‑1 (MQ=60)

                                                                   CCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAG                      >  SRR4302534.3909275/1‑94 (MQ=60)

                                                                    CTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGT                     >  SRR4302534.4014962/1‑94 (MQ=60)

                                                                    CTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGT                     >  SRR4302534.5826931/1‑94 (MQ=60)

                                                                     TGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTT                    >  SRR4302534.1390082/1‑94 (MQ=60)

                                                                     TGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTT                    >  SRR4302534.2139021/1‑94 (MQ=60)

                                                                     TGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTT                    <  SRR4302534.5557495/94‑1 (MQ=60)

                                                                      GACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCTGTGAATTCAGCGACTTGTCGCCCGTCAGTTT                   >  SRR4302534.4108769/1‑94 (MQ=60)

                                                                      GACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTT                   <  SRR4302534.734702/94‑1 (MQ=60)

                                                                      GACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTT                   <  SRR4302534.828198/94‑1 (MQ=60)

                                                                      GACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTT                   <  SRR4302534.2181877/94‑1 (MQ=60)

                                                                      GACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTAT                   <  SRR4302534.6369794/94‑1 (MQ=60)

                                                                       ACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTG                  >  SRR4302534.6011434/1‑94 (MQ=60)

                                                                       ACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTG                  <  SRR4302534.620820/94‑1 (MQ=60)

                                                                       ACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGCTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTG                  >  SRR4302534.5721382/1‑94 (MQ=60)

                                                                        CCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGC                 >  SRR4302534.6543092/1‑94 (MQ=60)

                                                                        CCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGC                 >  SRR4302534.5344472/1‑94 (MQ=60)

                                                                         CACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCC                >  SRR4302534.1976169/1‑94 (MQ=60)

                                                                         CACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCC                <  SRR4302534.1840874/94‑1 (MQ=60)

                                                                         CACCAAATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTGCGGTGAATTCAGCGTCTTGTCGCCCGTCAGTTTGCC                <  SRR4302534.4128350/94‑1 (MQ=60)

                                                                          ACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCG               >  SRR4302534.3910036/1‑94 (MQ=60)

                                                                           CCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGTCGT              >  SRR4302534.5650604/1‑94 (MQ=60)

                                                                           CCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGT              >  SRR4302534.1295882/1‑94 (MQ=60)

                                                                            CATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTA             >  SRR4302534.6049215/1‑94 (MQ=60)

                                                                            CATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTA             >  SRR4302534.4217887/1‑94 (MQ=60)

                                                                             ATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTAC            <  SRR4302534.85570/94‑1 (MQ=60)

                                                                             ATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTAC            <  SRR4302534.3720816/94‑1 (MQ=60)

                                                                             ATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTAC            >  SRR4302534.4976158/1‑94 (MQ=60)

                                                                              TATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACC           <  SRR4302534.5536223/94‑1 (MQ=60)

                                                                              TATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACC           <  SRR4302534.5766888/94‑1 (MQ=60)

                                                                              TATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACC           >  SRR4302534.539546/1‑94 (MQ=60)

                                                                                 AAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACG        >  SRR4302534.3274407/1‑94 (MQ=60)

                                                                                 AAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACG        <  SRR4302534.4287329/94‑1 (MQ=60)

                                                                                  AGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGC       >  SRR4302534.3481289/1‑94 (MQ=60)

                                                                                  AGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGC       <  SRR4302534.5624158/94‑1 (MQ=60)

                                                                                       AGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCACTG  <  SRR4302534.4753641/94‑1 (MQ=60)

                                                                                       AGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCACTG  <  SRR4302534.1748552/94‑1 (MQ=60)

GCTTTCGCATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCCG‑GCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCACTG  >  NC_000913/4013083‑4013262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`