Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,031,984	+C	coding (1250/1299 nt)	trkH →	TrkH

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,031,983	1	.	C	100.0%	748.1 / NA	215	A417P (GCA→CCA)	trkH	TrkH
Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (115/100); total (115/100)

Only 100 of 231 total aligned reads displayed.

ATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCG‑CACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATAA  >  NC_000913/4031891‑4032070

 tCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCG‑c                                                                                        <  2:5150662/93‑1 (MQ=255)

  cgcgCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCG‑cc                                                                                       <  2:568168/93‑2 (MQ=255)

    cgcACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCG‑ccac                                                                                     >  2:4341825/1‑90 (MQ=255)

    cgcACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCG‑ccac                                                                                     <  2:310319/93‑4 (MQ=255)

          gCCGGAACGTATCCTCTAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGt                                                                                <  2:1642538/93‑1 (MQ=255)

          gCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGt                                                                                <  2:409297/93‑1 (MQ=255)

          gCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGt                                                                                >  1:61097/1‑93 (MQ=255)

            cGGAACGTCTCCTCGAAGCTGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTgg                                                                              >  1:6316800/1‑93 (MQ=255)

             ggAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTggt                                                                             >  2:3574268/1‑92 (MQ=255)

              gAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGAt                                                                            >  1:5816464/1‑93 (MQ=255)

               aaCGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATg                                                                           <  2:915759/93‑1 (MQ=255)

               aaCGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATg                                                                           <  2:1516954/93‑1 (MQ=255)

                aCGTTTCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGa                                                                          <  1:3385344/93‑1 (MQ=255)

                 cGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGAc                                                                         <  1:2363246/93‑1 (MQ=255)

                 cGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGAc                                                                         <  2:1850149/93‑1 (MQ=255)

                 cGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGAc                                                                         <  1:5314002/93‑1 (MQ=255)

                   tATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACtt                                                                       <  1:6441787/93‑1 (MQ=255)

                   tATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACtt                                                                       >  1:4178772/1‑93 (MQ=255)

                   tATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACtt                                                                       >  1:1754801/1‑93 (MQ=255)

                   tATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACtt                                                                       >  1:1278606/1‑93 (MQ=255)

                    aTCCTCGAAGCCGTTTGGGTATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCAATTATCGCCACGGGCGTGGATGACttt                                                                      <  2:3184668/93‑1 (MQ=255)

                     tCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACtttt                                                                     <  2:4809073/93‑1 (MQ=255)

                     tCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGCCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACtttt                                                                     >  1:1927923/1‑93 (MQ=255)

                      ccTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTc                                                                    <  2:236193/93‑1 (MQ=255)

                       cTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCGTTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCt                                                                   <  1:2551280/93‑1 (MQ=255)

                       cTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCt                                                                   <  1:1039164/93‑1 (MQ=255)

                       cTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCt                                                                   <  2:820402/93‑1 (MQ=255)

                       cTCGAAGCCGTTTGGGGATTTTTCGCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCt                                                                   <  2:3558184/93‑1 (MQ=255)

                        tCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTg                                                                  >  2:432557/1‑93 (MQ=255)

                          gAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGcc                                                                <  1:4268700/93‑1 (MQ=255)

                           aaGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCt                                                               >  2:3770923/1‑93 (MQ=255)

                           aaGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCt                                                               >  1:4775925/1‑93 (MQ=255)

                            aGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCtt                                                              >  2:1686917/1‑93 (MQ=255)

                            aGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCtt                                                              >  1:2931263/1‑93 (MQ=255)

                            aGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGGTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCtt                                                              >  2:4403683/1‑93 (MQ=255)

                              ccGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTg                                                            <  1:1371097/93‑1 (MQ=255)

                                gTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCg                                                          >  1:4036215/1‑93 (MQ=255)

                                 tttGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGt                                                         <  2:2219536/93‑1 (MQ=255)

                                  ttGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTc                                                        >  2:588546/1‑93 (MQ=255)

                                    ggggATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCgg                                                      >  1:945443/1‑93 (MQ=255)

                                    ggggATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCgg                                                      >  1:462939/1‑93 (MQ=255)

                                       gATTTTGCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGgttg                                                   <  2:5339955/93‑1 (MQ=255)

                                        aTTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGgttgt                                                  <  2:2022748/93‑1 (MQ=255)

                                        aTTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGgttgt                                                  <  2:1168223/93‑1 (MQ=255)

                                         tttttCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGgttgtt                                                 >  1:526094/1‑93 (MQ=255)

                                         tttttCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGgttgtt                                                 <  1:5471712/93‑1 (MQ=255)

                                           tttCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGc                                               <  2:5373706/93‑1 (MQ=255)

                                           tttCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGc                                               <  1:3481167/93‑1 (MQ=255)

                                           tttCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGc                                               <  1:4451466/93‑1 (MQ=255)

                                              ctcCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCggc                                            >  1:2211017/1‑91 (MQ=255)

                                              ctcCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGAc                                            <  1:2067039/93‑1 (MQ=255)

                                               tcCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACa                                           <  2:3010751/93‑1 (MQ=255)

                                                ccGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACAt                                          <  2:4185474/93‑1 (MQ=255)

                                                ccGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACAt                                          >  1:5621721/1‑93 (MQ=255)

                                                   ccTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGa                                       >  1:3809105/1‑93 (MQ=255)

                                                    cTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGaa                                      >  2:3979341/1‑93 (MQ=255)

                                                    cTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGaa                                      >  2:2508997/1‑93 (MQ=255)

                                                       tGCATTGGTGTTTATTGTCAGTATGCTGGCTATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATaa                                   <  2:5584916/93‑1 (MQ=255)

                                                        gCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAAc                                  >  1:3951512/1‑93 (MQ=255)

                                                         cATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAAcc                                 <  1:1437731/93‑1 (MQ=255)

                                                         cATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAAcc                                 >  1:660885/1‑93 (MQ=255)

                                                          aTTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCt                                >  2:550447/1‑93 (MQ=255)

                                                          aTTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCt                                >  1:4731232/1‑93 (MQ=255)

                                                          aTTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCt                                >  1:4949005/1‑93 (MQ=255)

                                                          aTTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCt                                >  2:461490/1‑93 (MQ=255)

                                                           ttGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTg                               >  2:5087317/1‑93 (MQ=255)

                                                            tGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTgg                              <  2:681291/93‑1 (MQ=255)

                                                            tGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTgg                              <  2:2275454/93‑1 (MQ=255)

                                                              gtgtTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTgggg                            <  1:4887635/93‑1 (MQ=255)

                                                               tgtTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGc                           <  2:215898/93‑1 (MQ=255)

                                                                gtTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGcc                          <  2:3399024/93‑1 (MQ=255)

                                                                 tttATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCa                         <  1:4997121/93‑1 (MQ=255)

                                                                  ttATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACGTTGAATAACCTGGGGCCAg                        <  1:6295059/93‑1 (MQ=255)

                                                                  ttATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAg                        >  2:3747923/1‑93 (MQ=255)

                                                                   tATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAgg                       >  1:2882600/1‑93 (MQ=255)

                                                                       gTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCCGGGCtt                   >  1:2590411/1‑93 (MQ=255)

                                                                       gTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCtt                   <  2:361014/93‑1 (MQ=255)

                                                                         cAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTgg                 <  1:2720268/93‑1 (MQ=255)

                                                                           gTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCTTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCg               <  1:6377298/93‑1 (MQ=255)

                                                                            tATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGTCATTGAATAACCTGGGGCCAGGGCTTGGCGt              <  1:5149015/93‑1 (MQ=255)

                                                                             aTGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTg             <  1:106354/93‑1 (MQ=255)

                                                                              tGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTgg            <  2:59769/93‑1 (MQ=255)

                                                                               gCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGt           <  2:2805731/93‑1 (MQ=255)

                                                                               gCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGt           >  1:4374058/1‑93 (MQ=255)

                                                                                cTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGtt          <  1:2234008/93‑1 (MQ=255)

                                                                                 tGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGTCAGGGCTTGGCGTGGTTg         >  2:2741459/1‑93 (MQ=255)

                                                                                 tGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTg         >  1:3257568/1‑93 (MQ=255)

                                                                                 tGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTg         >  2:5320767/1‑93 (MQ=255)

                                                                                 tGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTg         <  1:6243662/93‑1 (MQ=255)

                                                                                 tGGCGAGTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTg         <  1:2989823/93‑1 (MQ=255)

                                                                                 cggCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTg         <  1:262214/92‑1 (MQ=255)

                                                                                  ggCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGc        >  2:3349307/1‑93 (MQ=255)

                                                                                  ggCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGc        <  1:1188736/93‑1 (MQ=255)

                                                                                   gCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCt       <  1:6015388/93‑1 (MQ=255)

                                                                                     gATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGa     >  2:582474/1‑93 (MQ=255)

                                                                                      aTTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGAt    >  1:1677057/1‑93 (MQ=255)

                                                                                       ttATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATa   >  1:4810964/1‑93 (MQ=255)

                                                                                       ttATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATa   >  1:3637510/1‑93 (MQ=255)

                                                                                       ttATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATa   <  2:178408/93‑1 (MQ=255)

                                                                                        tATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATaa  >  2:1315902/1‑93 (MQ=255)

ATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCG‑CACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATAA  >  NC_000913/4031891‑4032070

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCG‑CACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATAACTTTACC  >  NC_000913/4031894‑4032077

GCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCG‑Ccac                                                                                            >  SRR4302534.946112/1‑91 (MQ=60)

GCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCG‑Ccac                                                                                            >  SRR4302534.6652474/1‑91 (MQ=60)

GCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCG‑Ccac                                                                                            >  SRR4302534.2107038/1‑91 (MQ=60)

GCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCG‑Ccac                                                                                            >  SRR4302534.1444688/1‑91 (MQ=60)

 CGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACG                                                                                            <  SRR4302534.5065668/94‑1 (MQ=60)

  GCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGG                                                                                           >  SRR4302534.4727639/1‑94 (MQ=60)

  GCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATCGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGG                                                                                           >  SRR4302534.4017204/1‑94 (MQ=60)

  GCACTGCCGGAACGTATCCCCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGG                                                                                           >  SRR4302534.3845362/1‑94 (MQ=60)

   CACTGCCGGAACGTATCCTCGTAGCGGTTTGGGGATTTTTCGCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGG                                                                                          <  SRR4302534.1988395/94‑1 (MQ=60)

    ACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGC                                                                                         >  SRR4302534.4885486/1‑94 (MQ=60)

    ACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGC                                                                                         >  SRR4302534.2404694/1‑94 (MQ=60)

      TGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGT                                                                                       <  SRR4302534.346218/94‑1 (MQ=60)

      TGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGT                                                                                       >  SRR4302534.62755/1‑94 (MQ=60)

       GCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTG                                                                                      >  SRR4302534.1084588/1‑94 (MQ=60)

       GCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTG                                                                                      <  SRR4302534.4143953/94‑1 (MQ=60)

        CCGGAACGTCTCCTCGAAGCTGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGG                                                                                     >  SRR4302534.6487529/1‑94 (MQ=60)

        CCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGG                                                                                     >  SRR4302534.5398893/1‑94 (MQ=60)

        CCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGG                                                                                     >  SRR4302534.5924280/1‑94 (MQ=60)

          GGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGAT                                                                                   >  SRR4302534.5974329/1‑94 (MQ=60)

           GAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATG                                                                                  >  SRR4302534.6429268/1‑94 (MQ=60)

             ACGTTTCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGAC                                                                                <  SRR4302534.3476122/94‑1 (MQ=60)

              CGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACT                                                                               <  SRR4302534.5457367/94‑1 (MQ=60)

              CGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACT                                                                               <  SRR4302534.2425977/94‑1 (MQ=60)

               GTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTT                                                                              >  SRR4302534.1800364/1‑94 (MQ=60)

               GTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTT                                                                              >  SRR4302534.3856947/1‑94 (MQ=60)

               GTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTT                                                                              >  SRR4302534.1312263/1‑94 (MQ=60)

               GTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTT                                                                              >  SRR4302534.4291680/1‑94 (MQ=60)

                TATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTT                                                                             <  SRR4302534.6615388/94‑1 (MQ=60)

                 ATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGCCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTT                                                                            >  SRR4302534.1978323/1‑94 (MQ=60)

                 ATCCTCGAAGCCGTTTGGGGATTTTTCTCCGACTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTT                                                                            >  SRR4302534.543752/1‑94 (MQ=60)

                   CCTTGAAGCCGTTTGGCGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCT                                                                          <  SRR4302534.217776/94‑1 (MQ=60)

                   CCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCT                                                                          <  SRR4302534.2624272/94‑1 (MQ=60)

                    CTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCGTTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTG                                                                         <  SRR4302534.2618923/94‑1 (MQ=60)

                    CTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTG                                                                         <  SRR4302534.1065986/94‑1 (MQ=60)

                    CTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTG                                                                         <  SRR4302534.4522834/94‑1 (MQ=60)

                      CGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCC                                                                       >  SRR4302534.5098116/1‑94 (MQ=60)

                      CGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCC                                                                       >  SRR4302534.4464835/1‑94 (MQ=60)

                      CGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTATGCC                                                                       >  SRR4302534.1405313/1‑94 (MQ=60)

                       GAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCT                                                                      >  SRR4302534.4905620/1‑94 (MQ=60)

                       GAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCT                                                                      <  SRR4302534.4384058/94‑1 (MQ=60)

                       GAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCT                                                                      >  SRR4302534.6023471/1‑94 (MQ=60)

                        AAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTT                                                                     >  SRR4302534.6515345/1‑94 (MQ=60)

                        AAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTT                                                                     >  SRR4302534.3008216/1‑94 (MQ=60)

                        AAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTT                                                                     <  SRR4302534.5136540/94‑1 (MQ=60)

                        AAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTT                                                                     >  SRR4302534.1098948/1‑94 (MQ=60)

                          TCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTG                                                                   >  SRR4302534.3547032/1‑94 (MQ=60)

                          GCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTG                                                                   >  SRR4302534.6571111/1‑94 (MQ=60)

                           CCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGC                                                                  <  SRR4302534.1407233/94‑1 (MQ=60)

                            CGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCG                                                                 >  SRR4302534.4144416/1‑94 (MQ=60)

                            CGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCG                                                                 <  SRR4302534.2518368/94‑1 (MQ=60)

                            CGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCG                                                                 >  SRR4302534.2256017/1‑94 (MQ=60)

                            CGTTTGGGGATTTTTCTCCGCCTATGCATTGGGGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCG                                                                 >  SRR4302534.3236768/1‑94 (MQ=60)

                             GTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGT                                                                >  SRR4302534.4314940/1‑94 (MQ=60)

                               TTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCG                                                              <  SRR4302534.6288367/94‑1 (MQ=60)

                                TGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGG                                                             >  SRR4302534.474624/1‑94 (MQ=60)

                                TGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGG                                                             >  SRR4302534.969499/1‑94 (MQ=60)

                                   GGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTG                                                          >  SRR4302534.4905107/1‑94 (MQ=60)

                                    GATTTTTCTCCGCGTCTGAATTGGTGTTTATTCTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGT                                                         <  SRR4302534.4115866/94‑1 (MQ=60)

                                     ATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTT                                                        >  SRR4302534.539161/1‑94 (MQ=60)

                                      TTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTG                                                       <  SRR4302534.5619234/94‑1 (MQ=60)

                                       TTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGC                                                      >  SRR4302534.505589/1‑94 (MQ=60)

                                        TTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCG                                                     <  SRR4302534.3574743/94‑1 (MQ=60)

                                        TTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCG                                                     <  SRR4302534.4571788/94‑1 (MQ=60)

                                        TTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCG                                                     <  SRR4302534.4527766/94‑1 (MQ=60)

                                          TCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGGC                                                   >  SRR4302534.2269572/1‑94 (MQ=60)

                                           CTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACA                                                  <  SRR4302534.2121093/94‑1 (MQ=60)

                                            TCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACAT                                                 >  SRR4302534.5773844/1‑94 (MQ=60)

                                              CGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTG                                               <  SRR4302534.4943419/94‑1 (MQ=60)

                                               GCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGA                                              >  SRR4302534.1963600/1‑94 (MQ=60)

                                               GCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGA                                              >  SRR4302534.1762666/1‑94 (MQ=60)

                                               GCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGA                                              >  SRR4302534.3911377/1‑94 (MQ=60)

                                               GCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGA                                              >  SRR4302534.3953475/1‑94 (MQ=60)

                                                 CTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAAT                                            >  SRR4302534.6539348/1‑94 (MQ=60)

                                                  TATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATA                                           >  SRR4302534.4908907/1‑94 (MQ=60)

                                                   ATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAA                                          >  SRR4302534.2859129/1‑94 (MQ=60)

                                                   ATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAA                                          >  SRR4302534.620564/1‑94 (MQ=60)

                                                    TGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAAC                                         >  SRR4302534.2922286/1‑94 (MQ=60)

                                                    TGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAAC                                         >  SRR4302534.4057289/1‑94 (MQ=60)

                                                     GCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACC                                        >  SRR4302534.676953/1‑94 (MQ=60)

                                                     GCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACC                                        <  SRR4302534.131673/94‑1 (MQ=60)

                                                      CATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCT                                       <  SRR4302534.1475579/94‑1 (MQ=60)

                                                      CATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCT                                       >  SRR4302534.5083054/1‑94 (MQ=60)

                                                      CATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCT                                       >  SRR4302534.4859710/1‑94 (MQ=60)

                                                      CATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCT                                       >  SRR4302534.2984524/1‑94 (MQ=60)

                                                      CATTGATGTTTATTGTCAGTATGCTGGCTATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCT                                       <  SRR4302534.5312587/94‑1 (MQ=60)

                                                        TTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGG                                     <  SRR4302534.2289753/94‑1 (MQ=60)

                                                          GGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGG                                   <  SRR4302534.131079/94‑1 (MQ=60)

                                                           GTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGC                                  >  SRR4302534.5481390/1‑94 (MQ=60)

                                                           GTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGC                                  <  SRR4302534.4768419/94‑1 (MQ=60)

                                                           GTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGC                                  <  SRR4302534.5020174/94‑1 (MQ=60)

                                                            TGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCC                                 <  SRR4302534.4604812/94‑1 (MQ=60)

                                                             GTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCA                                <  SRR4302534.420529/94‑1 (MQ=60)

                                                              TTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAG                               <  SRR4302534.5132253/94‑1 (MQ=60)

                                                               TTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACGTTGAATAACCTGGGGCCAGG                              <  SRR4302534.6465329/94‑1 (MQ=60)

                                                               TTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGG                              >  SRR4302534.2958244/1‑94 (MQ=60)

                                                                   TGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCCGGGCTT                          >  SRR4302534.2658988/1‑94 (MQ=60)

                                                                   TGTCAGTATACTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGTGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTT                          >  SRR4302534.6480506/1‑94 (MQ=60)

                                                                    GTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTG                         <  SRR4302534.2441961/94‑1 (MQ=60)

                                                                    GCCAGTATGCTGGCGATTATCGCCACCGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTGGTTGCTACATTGAATAACCTGGGGCCAGGGCTTG                         >  SRR4302534.3232521/1‑94 (MQ=60)

                                                                     TCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGG                        >  SRR4302534.275/1‑94 (MQ=60)

                                                                      CAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGC                       <  SRR4302534.5647179/94‑1 (MQ=60)

                                                                      CAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGC                       <  SRR4302534.2792053/94‑1 (MQ=60)

                                                                      CAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGC                       <  SRR4302534.770785/94‑1 (MQ=60)

                                                                        GTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCTTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGT                     <  SRR4302534.6549548/94‑1 (MQ=60)

                                                                         TATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGTCATTGAATAACCTGGGGCCAGGGCTTGGCGTG                    <  SRR4302534.5287934/94‑1 (MQ=60)

                                                                         TATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTG                    >  SRR4302534.303930/1‑94 (MQ=60)

                                                                         TATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTG                    >  SRR4302534.1782814/1‑94 (MQ=60)

                                                                          ATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGG                   <  SRR4302534.109196/94‑1 (MQ=60)

                                                                           TGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGT                  >  SRR4302534.4491945/1‑94 (MQ=60)

                                                                           TGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGT                  <  SRR4302534.3612266/94‑1 (MQ=60)

                                                                            gctgtctattgtcgcCACGGGCGTTGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTT                 <  SRR4302534.2682955/79‑1 (MQ=60)

                                                                            GCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTTCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGGT                 >  SRR4302534.3591593/1‑94 (MQ=60)

                                                                             CTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTG                >  SRR4302534.574429/1‑94 (MQ=60)

                                                                             CTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTG                >  SRR4302534.3344320/1‑94 (MQ=60)

                                                                             CTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTG                <  SRR4302534.2293189/94‑1 (MQ=60)

                                                                              TGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGC               <  SRR4302534.6413048/94‑1 (MQ=60)

                                                                              TGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGC               >  SRR4302534.6349931/1‑94 (MQ=60)

                                                                              TGGCGAGTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGC               <  SRR4302534.3067990/94‑1 (MQ=60)

                                                                              CGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGC               <  SRR4302534.269019/94‑1 (MQ=60)

                                                                               GGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCT              >  SRR4302534.3287088/1‑94 (MQ=60)

                                                                               GGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCT              <  SRR4302534.1219997/94‑1 (MQ=60)

                                                                                GCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTG             <  SRR4302534.6178840/94‑1 (MQ=60)

                                                                                  GATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGAT           >  SRR4302534.1720691/1‑94 (MQ=60)

                                                                                   ATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATA          >  SRR4302534.3735273/1‑94 (MQ=60)

                                                                                   ATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATA          >  SRR4302534.4941570/1‑94 (MQ=60)

                                                                                   ATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATA          >  SRR4302534.1598028/1‑94 (MQ=60)

                                                                                      ATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATAACT       >  SRR4302534.6272668/1‑94 (MQ=60)

                                                                                       TCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATAACTT      <  SRR4302534.614283/94‑1 (MQ=60)

                                                                                        tgcCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATAACTTT     >  SRR4302534.998690/4‑94 (MQ=60)

                                                                                        cgcCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATAACTTT     >  SRR4302534.6388863/4‑94 (MQ=60)

                                                                                        cgcCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATAACTTT     <  SRR4302534.5969113/91‑1 (MQ=60)

                                                                                        cgcCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATAACTTT     >  SRR4302534.5191935/4‑94 (MQ=60)

                                                                                         gcCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATAACTTTA    >  SRR4302534.5694314/3‑94 (MQ=60)

                                                                                         C‑CACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATAACTTTAC   <  SRR4302534.1905253/94‑1 (MQ=60)

                                                                                           CACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATAACTTTACC  >  SRR4302534.5409390/1‑94 (MQ=60)

                                                                                           CACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATAACTTTACC  >  SRR4302534.932487/1‑94 (MQ=60)

                                                                                           CACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATAACTTTACC  >  SRR4302534.5069136/1‑94 (MQ=60)

                                                                                           CACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATAACTTTACC  >  SRR4302534.3001305/1‑94 (MQ=60)

GCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCG‑CACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATAACTTTACC  >  NC_000913/4031894‑4032077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`