Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,039,349	T→C	P77P (CCA→CCG)	mobA ←	MobA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,039,349	0	T	C	100.0%	878.2 / NA	251	P77P (CCA→CCG)	mobA	MobA
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (131/120); total (131/120)

Only 100 of 254 total aligned reads displayed.

AGGGGGAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCTGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCACGACGTGAGA  >  NC_000913/4039259‑4039438

 ggggtAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCggg                                                                                        >  2:3377678/1‑93 (MQ=255)

 gggggAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCggg                                                                                        >  1:141228/1‑93 (MQ=255)

 gggggAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCggg                                                                                        <  2:4808661/93‑1 (MQ=255)

 gggggAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCggg                                                                                        >  1:4919472/1‑93 (MQ=255)

  ggggAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGt                                                                                       <  2:2312890/93‑1 (MQ=255)

  ggggAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGt                                                                                       >  1:3723279/1‑93 (MQ=255)

  ggggAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGt                                                                                       <  1:2592166/93‑1 (MQ=255)

   gggAATGTAAGGCGTATCGCACGCGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTa                                                                                      <  1:3301781/93‑1 (MQ=255)

    ggAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTaa                                                                                     >  1:591853/1‑93 (MQ=255)

     gAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAAt                                                                                    <  1:3123792/93‑1 (MQ=255)

        tGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCg                                                                                 >  2:5622909/1‑93 (MQ=255)

          tAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGcc                                                                               <  2:5691689/93‑1 (MQ=255)

           aaGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCa                                                                              <  2:4072338/93‑1 (MQ=255)

           aaGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTACTGCCAGAGGGCCCGGGTAATCCGCCa                                                                              >  2:3016751/1‑93 (MQ=255)

            aGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAg                                                                             >  1:4596844/1‑93 (MQ=255)

             ggCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGt                                                                            >  1:3640676/1‑93 (MQ=255)

                gTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGaa                                                                         >  1:713250/1‑93 (MQ=255)

                  aTCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATc                                                                       >  2:4925026/1‑93 (MQ=255)

                  aTCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATc                                                                       <  2:1879821/93‑1 (MQ=255)

                  aTCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATc                                                                       <  2:4971456/93‑1 (MQ=255)

                    cGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCtt                                                                     <  2:2755892/93‑1 (MQ=255)

                       aCGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCaa                                                                  <  2:1034597/93‑1 (MQ=255)

                       aCGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCaa                                                                  >  2:3123595/1‑93 (MQ=255)

                        cGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAAt                                                                 >  2:2657663/1‑93 (MQ=255)

                        cGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAAt                                                                 >  1:200188/1‑93 (MQ=255)

                         gggCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATc                                                                >  2:4672898/1‑93 (MQ=255)

                         gggCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATc                                                                <  1:5683705/93‑1 (MQ=255)

                         gggCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATc                                                                <  2:1253744/93‑1 (MQ=255)

                          ggCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCa                                                               >  2:4153299/1‑93 (MQ=255)

                            caaaacaaaaACCGCTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTAAATCTTCAATCACt                                                             <  2:5204/93‑1 (MQ=255)

                            caaaacaaaaACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACt                                                             <  2:392917/93‑1 (MQ=255)

                             aaaacaaaacCCGCTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACtt                                                            <  1:12440/93‑1 (MQ=255)

                             aaaacaaaaACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACtt                                                            <  1:2638906/93‑1 (MQ=255)

                              aaacaaaaACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACttt                                                           <  2:1190985/93‑1 (MQ=255)

                               aacaaaaACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTc                                                          >  1:2178754/1‑93 (MQ=255)

                               aacaaaaACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTc                                                          <  1:4884314/93‑1 (MQ=255)

                               aacaaaaACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTc                                                          >  1:6029706/1‑93 (MQ=255)

                                acaaaaACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCa                                                         <  1:5185233/93‑1 (MQ=255)

                                acaaaaACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCa                                                         <  2:5894308/93‑1 (MQ=255)

                                  aaaaaCCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGa                                                       >  2:3114941/1‑93 (MQ=255)

                                  aaaaaCCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGa                                                       >  1:2064479/1‑93 (MQ=255)

                                  aaaaaCCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGa                                                       >  1:541726/1‑93 (MQ=255)

                                   aaaaCCACTCCCCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGAc                                                      <  1:2413528/93‑1 (MQ=255)

                                   aaaaCCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGAc                                                      <  2:1572234/93‑1 (MQ=255)

                                   aaaaCCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGAc                                                      >  2:3529066/1‑93 (MQ=255)

                                    aaaCCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGAcc                                                     >  2:859346/1‑93 (MQ=255)

                                     aaCCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCg                                                    <  1:5041832/93‑1 (MQ=255)

                                      aCCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGc                                                   >  1:2283856/1‑93 (MQ=255)

                                      aCCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGc                                                   <  2:6020415/93‑1 (MQ=255)

                                       ccACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCt                                                  <  2:2486254/93‑1 (MQ=255)

                                          cTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGc                                               >  1:5452949/1‑93 (MQ=255)

                                          cTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGc                                               >  1:971199/1‑93 (MQ=255)

                                            cACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCt                                             <  1:5779899/93‑1 (MQ=255)

                                              ccAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGa                                           <  2:2979852/93‑1 (MQ=255)

                                                aGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATa                                         <  1:3246406/93‑1 (MQ=255)

                                                aGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATa                                         <  1:2873203/93‑1 (MQ=255)

                                                aGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATa                                         >  2:1979813/1‑93 (MQ=255)

                                                   ttCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGAt                                      >  1:4022899/1‑93 (MQ=255)

                                                   ttCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGAt                                      <  1:33950/93‑1 (MQ=255)

                                                   ttCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGAt                                      >  1:4174472/1‑93 (MQ=255)

                                                    tCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGAtt                                     >  1:1771382/1‑93 (MQ=255)

                                                    tCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGAtt                                     >  2:4190665/1‑93 (MQ=255)

                                                     ccTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGAttt                                    >  1:1637093/1‑93 (MQ=255)

                                                       tgctgcATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTcc                                  <  2:1865720/93‑1 (MQ=255)

                                                       tgctgcATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTcc                                  <  1:4020606/93‑1 (MQ=255)

                                                       tgctgcATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTcc                                  >  2:71473/1‑93 (MQ=255)

                                                        gctgcATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCt                                 >  1:6431114/1‑93 (MQ=255)

                                                        gctgcATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCt                                 <  1:6186054/93‑1 (MQ=255)

                                                         ctgcATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCtg                                >  1:478730/1‑93 (MQ=255)

                                                         ctgcATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCtg                                <  1:294042/93‑1 (MQ=255)

                                                          tgcATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCtga                               >  2:6129744/1‑93 (MQ=255)

                                                           gcATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCtgat                              <  1:3046525/93‑1 (MQ=255)

                                                           gcATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCtgat                              <  1:3672618/93‑1 (MQ=255)

                                                            cATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCtgatg                             >  2:5366308/1‑93 (MQ=255)

                                                             aTTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCtgatgt                            <  2:649362/93‑2 (MQ=255)

                                                              ttACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCCGACCGCTTGCCTGATAGCTTTCCTTATGAc                           >  1:1278161/1‑93 (MQ=255)

                                                              ttACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGAc                           <  2:4911280/93‑1 (MQ=255)

                                                              ttACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGAc                           <  1:4630253/93‑1 (MQ=255)

                                                              ttACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGAc                           >  1:5274816/1‑93 (MQ=255)

                                                               tACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACg                          >  1:4987716/1‑93 (MQ=255)

                                                                aCTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTTCTGATGACGa                         <  1:397684/93‑1 (MQ=255)

                                                                aCTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGa                         <  2:1071990/93‑1 (MQ=255)

                                                                  tGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGAtt                       >  1:33533/1‑93 (MQ=255)

                                                                  tGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGAtt                       <  1:3064870/93‑1 (MQ=255)

                                                                   gAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTa                      >  1:1096193/1‑93 (MQ=255)

                                                                     aaGCATTCCTGCCAGAGGGCCCGGGCAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGc                    >  2:3803935/1‑93 (MQ=255)

                                                                      aGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCa                   >  2:6156623/1‑93 (MQ=255)

                                                                      aGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCa                   <  1:3951956/93‑1 (MQ=255)

                                                                       gCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCAt                  <  1:4453745/93‑1 (MQ=255)

                                                                          ttCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTaa               <  2:2347969/93‑1 (MQ=255)

                                                                           tCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAAc              >  1:3532432/1‑93 (MQ=255)

                                                                              tGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCac           >  1:3137440/1‑93 (MQ=255)

                                                                              tGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCac           <  1:3771340/93‑1 (MQ=255)

                                                                              tGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCac           <  1:5630998/93‑1 (MQ=255)

                                                                                ccAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCacga         <  2:4523137/93‑1 (MQ=255)

                                                                                 cAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCacgac        <  2:2109112/93‑1 (MQ=255)

                                                                                  agagGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCacgacg       <  1:1183282/93‑1 (MQ=255)

                                                                                   gagGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCacgacgg      >  1:1365566/1‑92 (MQ=255)

                                                                                       gCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCACGACGTgaga  >  2:3235497/1‑93 (MQ=255)

                                                                                       gCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCACGACGTgaga  <  2:274936/93‑1 (MQ=255)

AGGGGGAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCTGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCACGACGTGAGA  >  NC_000913/4039259‑4039438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATCAGGGGGAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCTGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCACGACGTGAGAGAGC  >  NC_000913/4039256‑4039442

ATCAGGGGGAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCC                                                                                               >  SRR4302534.1018759/1‑94 (MQ=60)

ATCAGGGGGAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCC                                                                                               <  SRR4302534.5971927/94‑1 (MQ=60)

  CAGGGGGAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGG                                                                                             <  SRR4302534.5348361/94‑1 (MQ=60)

   AGGGGGAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGG                                                                                            >  SRR4302534.626429/1‑94 (MQ=60)

   AGGGGGAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGG                                                                                            <  SRR4302534.5681524/94‑1 (MQ=60)

   AGGGGGAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGG                                                                                            >  SRR4302534.144930/1‑94 (MQ=60)

   AGGGGGAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGG                                                                                            >  SRR4302534.5052806/1‑94 (MQ=60)

    GGGGGAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGT                                                                                           >  SRR4302534.3823354/1‑94 (MQ=60)

    GGGGGAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGT                                                                                           >  SRR4302534.5513058/1‑94 (MQ=60)

    GGGGGAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGT                                                                                           <  SRR4302534.1349155/94‑1 (MQ=60)

     GGGGAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTA                                                                                          <  SRR4302534.2660780/94‑1 (MQ=60)

     GGGGAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTA                                                                                          >  SRR4302534.2733723/1‑94 (MQ=60)

     GGGGAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTA                                                                                          >  SRR4302534.614361/1‑94 (MQ=60)

      GGGAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAA                                                                                         >  SRR4302534.82692/1‑94 (MQ=60)

      GGGAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAA                                                                                         >  SRR4302534.606305/1‑94 (MQ=60)

      GGGAATGTAAGGCGTATCGCACGCGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAA                                                                                         <  SRR4302534.3389915/94‑1 (MQ=60)

        GAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATC                                                                                       <  SRR4302534.4125822/94‑1 (MQ=60)

        GAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATC                                                                                       <  SRR4302534.3205915/94‑1 (MQ=60)

         AATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCC                                                                                      <  SRR4302534.3856312/94‑1 (MQ=60)

          ATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCG                                                                                     >  SRR4302534.5012116/1‑94 (MQ=60)

           TGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGC                                                                                    <  SRR4302534.2649427/94‑1 (MQ=60)

            GTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCC                                                                                   >  SRR4302534.412606/1‑94 (MQ=60)

             TAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCA                                                                                  >  SRR4302534.3164573/1‑94 (MQ=60)

             TAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCA                                                                                  <  SRR4302534.5654231/94‑1 (MQ=60)

              AAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAG                                                                                 >  SRR4302534.5341336/1‑94 (MQ=60)

              AAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAG                                                                                 >  SRR4302534.3413487/1‑94 (MQ=60)

              AAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAG                                                                                 >  SRR4302534.4721599/1‑94 (MQ=60)

               AGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGT                                                                                >  SRR4302534.3209030/1‑94 (MQ=60)

               AGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGT                                                                                >  SRR4302534.4675600/1‑94 (MQ=60)

               AGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGT                                                                                >  SRR4302534.3738523/1‑94 (MQ=60)

               AGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGT                                                                                <  SRR4302534.366732/94‑1 (MQ=60)

                  CGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAA                                                                             >  SRR4302534.1322645/1‑94 (MQ=60)

                  CGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAA                                                                             <  SRR4302534.5992045/94‑1 (MQ=60)

                  CGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAA                                                                             >  SRR4302534.730793/1‑94 (MQ=60)

                  CGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAA                                                                             >  SRR4302534.6243605/1‑94 (MQ=60)

                    TATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATC                                                                           >  SRR4302534.3768840/1‑94 (MQ=60)

                      TCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTT                                                                         >  SRR4302534.1834430/1‑94 (MQ=60)

                         CACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTACTCCGCCAGTGAATCTTCAA                                                                      >  SRR4302534.5221578/1‑94 (MQ=60)

                         CACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAA                                                                      >  SRR4302534.3185170/1‑94 (MQ=60)

                          ACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAAT                                                                     >  SRR4302534.5888619/1‑94 (MQ=60)

                          ACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAAT                                                                     >  SRR4302534.205444/1‑94 (MQ=60)

                           CGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATC                                                                    >  SRR4302534.3277515/1‑94 (MQ=60)

                            GGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCA                                                                   <  SRR4302534.5837625/94‑1 (MQ=60)

                            GGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCA                                                                   >  SRR4302534.2462461/1‑94 (MQ=60)

                            GGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCA                                                                   >  SRR4302534.4108408/1‑94 (MQ=60)

                              GCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACT                                                                 <  SRR4302534.2903103/94‑1 (MQ=60)

                              GCAAAACAAAAACCACTCACCAGCTTCCTGCCGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACT                                                                 >  SRR4302534.2696906/1‑94 (MQ=60)

                               CAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTT                                                                >  SRR4302534.4889819/1‑94 (MQ=60)

                               CAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTT                                                                >  SRR4302534.3463609/1‑94 (MQ=60)

                                AAAACAAAACCCGCTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTT                                                               <  SRR4302534.12766/94‑1 (MQ=60)

                                AAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTT                                                               >  SRR4302534.2253118/1‑94 (MQ=60)

                                AAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTT                                                               >  SRR4302534.4076882/1‑94 (MQ=60)

                                AAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTT                                                               >  SRR4302534.6620539/1‑94 (MQ=60)

                                AAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTT                                                               <  SRR4302534.2708709/94‑1 (MQ=60)

                                 AAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTC                                                              >  SRR4302534.2236319/1‑94 (MQ=60)

                                 AAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTC                                                              >  SRR4302534.6193557/1‑94 (MQ=60)

                                  AACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCA                                                             <  SRR4302534.5016780/94‑1 (MQ=60)

                                   ACAAATACCCCTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCTCTTTCAG                                                            <  SRR4302534.5877247/94‑1 (MQ=60)

                                   ACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAG                                                            <  SRR4302534.5324996/94‑1 (MQ=60)

                                    CAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGA                                                           >  SRR4302534.2118463/1‑94 (MQ=60)

                                    CAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGA                                                           >  SRR4302534.555127/1‑94 (MQ=60)

                                      AAAACCACTCCCCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACC                                                         <  SRR4302534.2477719/94‑1 (MQ=60)

                                      AAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACC                                                         <  SRR4302534.3660681/94‑1 (MQ=60)

                                       ACACCACTCACCAGCTCCCTGGTGAATTCATGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCG                                                        <  SRR4302534.3528758/94‑1 (MQ=60)

                                       AAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCG                                                        <  SRR4302534.6514399/94‑1 (MQ=60)

                                       AAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCG                                                        >  SRR4302534.1757255/1‑94 (MQ=60)

                                       AAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCG                                                        >  SRR4302534.4346248/1‑94 (MQ=60)

                                       AAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCG                                                        >  SRR4302534.4805417/1‑94 (MQ=60)

                                        AACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGC                                                       <  SRR4302534.5177991/94‑1 (MQ=60)

                                        AACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGC                                                       >  SRR4302534.2344463/1‑94 (MQ=60)

                                          CCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTT                                                     <  SRR4302534.1307250/94‑1 (MQ=60)

                                          CCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTT                                                     <  SRR4302534.351906/94‑1 (MQ=60)

                                          CCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTT                                                     <  SRR4302534.6625942/94‑1 (MQ=60)

                                           CACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTG                                                    <  SRR4302534.2528005/94‑1 (MQ=60)

                                           CACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTG                                                    >  SRR4302534.3889418/1‑94 (MQ=60)

                                            ACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGC                                                   >  SRR4302534.5599881/1‑94 (MQ=60)

                                            ACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGC                                                   >  SRR4302534.995938/1‑94 (MQ=60)

                                            ACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGC                                                   <  SRR4302534.2170485/94‑1 (MQ=60)

                                              TCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCT                                                 <  SRR4302534.1832535/94‑1 (MQ=60)

                                              TCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTCTCAGACCGCTTGCCT                                                 <  SRR4302534.4026858/94‑1 (MQ=60)

                                               CACCAGCTTCCTGCTGCATTACTGAAAGCATTGCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTG                                                <  SRR4302534.1201599/94‑1 (MQ=60)

                                               CACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTG                                                <  SRR4302534.5936676/94‑1 (MQ=60)

                                                CCCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGA                                               <  SRR4302534.5100372/94‑1 (MQ=60)

                                                ACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGA                                               <  SRR4302534.2369185/94‑1 (MQ=60)

                                                ACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGA                                               <  SRR4302534.5247412/94‑1 (MQ=60)

                                                ACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGA                                               >  SRR4302534.3028499/1‑94 (MQ=60)

                                                 CCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGAT                                              >  SRR4302534.5865744/1‑94 (MQ=60)

                                                 CCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGAT                                              >  SRR4302534.2998675/1‑94 (MQ=60)

                                                   AGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAG                                            <  SRR4302534.2948650/94‑1 (MQ=60)

                                                   AGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAG                                            <  SRR4302534.3332838/94‑1 (MQ=60)

                                                     CTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGAT                                          >  SRR4302534.4130761/1‑94 (MQ=60)

                                                     CTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGAT                                          >  SRR4302534.4287237/1‑94 (MQ=60)

                                                     CTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATACGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGAT                                          >  SRR4302534.3396516/1‑94 (MQ=60)

                                                      TTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATT                                         >  SRR4302534.1817374/1‑94 (MQ=60)

                                                      TTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATT                                         <  SRR4302534.34837/94‑1 (MQ=60)

                                                      TTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATT                                         <  SRR4302534.5584518/94‑1 (MQ=60)

                                                      TTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGGAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATT                                         >  SRR4302534.4192213/1‑94 (MQ=60)

                                                      TTCCTGCTGCATTACTGAAAGCAGTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCGTGCCTTATAGATT                                         >  SRR4302534.1422833/1‑94 (MQ=60)

                                                       TCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTT                                        >  SRR4302534.1679792/1‑94 (MQ=60)

                                                       TCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTT                                        <  SRR4302534.2133490/94‑1 (MQ=60)

                                                        CCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTC                                       >  SRR4302534.6058599/1‑94 (MQ=60)

                                                         CTGCTGCATTACTGTAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCC                                      >  SRR4302534.5060636/1‑94 (MQ=60)

                                                         CTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCC                                      >  SRR4302534.5540926/1‑94 (MQ=60)

                                                          TGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCT                                     <  SRR4302534.4128391/94‑1 (MQ=60)

                                                          TGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCT                                     >  SRR4302534.3084135/1‑94 (MQ=60)

                                                          TGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCT                                     >  SRR4302534.1617690/1‑94 (MQ=60)

                                                          TGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCT                                     >  SRR4302534.6604495/1‑94 (MQ=60)

                                                           GCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTG                                    >  SRR4302534.490757/1‑94 (MQ=60)

                                                           GCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTG                                    <  SRR4302534.6354411/94‑1 (MQ=60)

                                                           GCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTG                                    >  SRR4302534.1235002/1‑94 (MQ=60)

                                                            CTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGA                                   <  SRR4302534.301645/94‑1 (MQ=60)

                                                            CTGCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGA                                   <  SRR4302534.337538/94‑1 (MQ=60)

                                                              GCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATG                                 <  SRR4302534.3126435/94‑1 (MQ=60)

                                                              GCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATG                                 <  SRR4302534.3771348/94‑1 (MQ=60)

                                                              GCATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATG                                 <  SRR4302534.3277955/94‑1 (MQ=60)

                                                                ATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCCGACCGCTTGCCTGATAGCTTTCCTTATGAC                               >  SRR4302534.1311808/1‑94 (MQ=60)

                                                                ATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGAC                               >  SRR4302534.5417269/1‑94 (MQ=60)

                                                                ATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGAC                               >  SRR4302534.3772088/1‑94 (MQ=60)

                                                                ATTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGAC                               <  SRR4302534.2089153/94‑1 (MQ=60)

                                                                 TTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACG                              >  SRR4302534.5122666/1‑94 (MQ=60)

                                                                 TTACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACG                              <  SRR4302534.4755905/94‑1 (MQ=60)

                                                                   ACTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTTCTGATGACGAT                            <  SRR4302534.407856/94‑1 (MQ=60)

                                                                    CTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATT                           >  SRR4302534.4129006/1‑94 (MQ=60)

                                                                    CTGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATT                           >  SRR4302534.34411/1‑94 (MQ=60)

                                                                     TGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTA                          >  SRR4302534.1124718/1‑94 (MQ=60)

                                                                     TGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTA                          >  SRR4302534.4750962/1‑94 (MQ=60)

                                                                     TGAAAGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTA                          <  SRR4302534.3145320/94‑1 (MQ=60)

                                                                         AGCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCAT                      <  SRR4302534.4057743/94‑1 (MQ=60)

                                                                          GCATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATT                     <  SRR4302534.4574130/94‑1 (MQ=60)

                                                                           CATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTA                    >  SRR4302534.1678060/1‑94 (MQ=60)

                                                                            ATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAA                   >  SRR4302534.512218/1‑94 (MQ=60)

                                                                            ATTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAA                   >  SRR4302534.4583582/1‑94 (MQ=60)

                                                                             TTCCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAAC                  >  SRR4302534.3627450/1‑94 (MQ=60)

                                                                               CCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCA                <  SRR4302534.5791711/94‑1 (MQ=60)

                                                                               CCTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCA                <  SRR4302534.1265208/94‑1 (MQ=60)

                                                                                CTGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCAC               >  SRR4302534.3219944/1‑94 (MQ=60)

                                                                                 TGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCACG              <  SRR4302534.3872610/94‑1 (MQ=60)

                                                                                 TGCCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCACG              <  SRR4302534.5783402/94‑1 (MQ=60)

                                                                                   CCAGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCACGAC            <  SRR4302534.501620/94‑1 (MQ=60)

                                                                                     AGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCACGACGT          <  SRR4302534.1214380/94‑1 (MQ=60)

                                                                                     AGAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCACGACGG          >  SRR4302534.1401531/1‑94 (MQ=60)

                                                                                      GAGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCACGACGTG         <  SRR4302534.3787053/94‑1 (MQ=60)

                                                                                       AGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCACGACGTGA        >  SRR4302534.4966692/1‑94 (MQ=60)

                                                                                       AGGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCACGACGTGA        <  SRR4302534.1025596/94‑1 (MQ=60)

                                                                                        GGGCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCACGACGTGAG       >  SRR4302534.3129130/1‑94 (MQ=60)

                                                                                          GCCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCACGACGTGAGAG     >  SRR4302534.642018/1‑94 (MQ=60)

                                                                                           CCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCACGACGTGAGAGA    >  SRR4302534.6267639/1‑94 (MQ=60)

                                                                                           CCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCACGACGTGAGAGA    >  SRR4302534.1353150/1‑94 (MQ=60)

                                                                                           CCCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCACGACGTGAGAGA    <  SRR4302534.323669/94‑1 (MQ=60)

                                                                                            CCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCACGACGTGAGAGAG   >  SRR4302534.2750151/1‑94 (MQ=60)

                                                                                            CCGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCACGACGTGAGAGAG   >  SRR4302534.3553936/1‑94 (MQ=60)

                                                                                             CGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCACGACGTGAGAGAGC  >  SRR4302534.1252460/1‑94 (MQ=60)

ATCAGGGGGAATGTAAGGCGTATCGCACGGGCAAAACAAAAACCACTCACCAGCTTCCTGCTGCATTACTGAAAGCATTCCTGCCAGAGGGCCTGGGTAATCCGCCAGTGAATCTTCAATCACTTTCAGACCGCTTGCCTGATAGATTTCCTGATGACGATTAGCATTAACCACGACGTGAGAGAGC  >  NC_000913/4039256‑4039442

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`