Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,158,827	G→T	G61V (GGC→GTC)	yijC →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,158,827	0	G	T	100.0%	984.2 / NA	261	G61V (GGC→GTC)	yijC	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (124/137); total (124/137)

Only 100 of 266 total aligned reads displayed.

GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTACGCC  >  NC_000913/4158737‑4158916

gccgTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCa                                                                                         <  1:1388493/93‑1 (MQ=255)

 ccgTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCAt                                                                                        <  2:1993059/93‑1 (MQ=255)

 ccgTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCAt                                                                                        >  2:5837808/1‑93 (MQ=255)

  cgTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCAtt                                                                                       <  1:1221458/93‑1 (MQ=255)

    ttCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGc                                                                                     >  2:4697575/1‑93 (MQ=255)

    ttCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGc                                                                                     >  2:1086335/1‑93 (MQ=255)

    ttCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGc                                                                                     <  2:660466/93‑1 (MQ=255)

     tCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCt                                                                                    >  1:4843365/1‑93 (MQ=255)

      cGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTc                                                                                   >  2:3015505/1‑93 (MQ=255)

       gCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTcc                                                                                  >  1:3656790/1‑93 (MQ=255)

          ggtggAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCAc                                                                               >  2:2037388/1‑93 (MQ=255)

             ggAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACctc                                                                            <  2:2106153/93‑1 (MQ=255)

             ggAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACctc                                                                            >  2:4088278/1‑93 (MQ=255)

              gAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACctct                                                                           >  2:2497787/1‑93 (MQ=255)

              gAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACctct                                                                           >  2:1813256/1‑93 (MQ=255)

              gAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACctct                                                                           <  2:1021364/93‑1 (MQ=255)

               aaGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCtt                                                                          <  1:2527789/93‑1 (MQ=255)

                aGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCttt                                                                         >  2:6273325/1‑93 (MQ=255)

                aGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCttt                                                                         <  2:2817411/93‑1 (MQ=255)

                 gCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCtttt                                                                        >  1:3118628/1‑93 (MQ=255)

                  ccGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCttttt                                                                       <  1:5111444/93‑1 (MQ=255)

                      aTTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCg                                                                   >  2:5541288/1‑93 (MQ=255)

                       tttAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCgg                                                                  >  1:3798474/1‑93 (MQ=255)

                         tAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCa                                                                <  1:6003148/93‑1 (MQ=255)

                           gCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCAtt                                                              >  1:6046584/1‑93 (MQ=255)

                           gCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCAtt                                                              <  2:2334755/93‑1 (MQ=255)

                              aaTTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTcc                                                           >  2:3543008/1‑93 (MQ=255)

                              aaTTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTcc                                                           <  1:2223689/93‑1 (MQ=255)

                              aaTTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTcc                                                           <  1:2773755/93‑1 (MQ=255)

                              aaTTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTcc                                                           <  2:2582564/93‑1 (MQ=255)

                               aTTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCcg                                                          >  1:687798/1‑93 (MQ=255)

                               aTTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCcg                                                          <  2:1864759/93‑1 (MQ=255)

                               aTTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCcg                                                          <  1:3416403/93‑1 (MQ=255)

                                ttAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCcgc                                                         >  2:6008739/1‑93 (MQ=255)

                                  aaGTGCTGACCGAAGCTTCGCCAGCGTGATTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGa                                                       <  2:3083175/93‑1 (MQ=255)

                                  aaGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGa                                                       <  2:4041607/93‑1 (MQ=255)

                                   aGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGAc                                                      >  1:5961529/1‑93 (MQ=255)

                                       cTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAg                                                  <  2:3365967/93‑1 (MQ=255)

                                       cTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAg                                                  <  2:4597987/93‑1 (MQ=255)

                                       cTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAg                                                  <  2:2479231/93‑1 (MQ=255)

                                        tGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGa                                                 <  2:1377009/93‑1 (MQ=255)

                                         gAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGAc                                                <  1:5489472/93‑1 (MQ=255)

                                         gAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGAc                                                >  1:1594883/1‑93 (MQ=255)

                                         gAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCCACGTAGAc                                                <  1:6325004/93‑1 (MQ=255)

                                           aCGCAGCTTCGCCCGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGa                                              >  1:6199597/1‑93 (MQ=255)

                                            cGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGaa                                             >  1:104812/1‑93 (MQ=255)

                                            cGCAGCGTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACATCTTTTTATCGGCATTTCCGCGACGTAGACGaa                                             >  1:5356938/1‑93 (MQ=255)

                                             gCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAAc                                            <  2:6203350/93‑1 (MQ=255)

                                             gCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAAc                                            <  1:2893887/93‑1 (MQ=255)

                                              cAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACt                                           <  2:2269411/93‑1 (MQ=255)

                                               aGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTg                                          <  1:5732095/93‑1 (MQ=255)

                                               aGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTg                                          >  1:4394964/1‑93 (MQ=255)

                                                gCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTgg                                         >  1:6337510/1‑93 (MQ=255)

                                                    cGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCt                                     <  2:1155811/93‑1 (MQ=255)

                                                     gCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTg                                    <  1:5140079/93‑1 (MQ=255)

                                                      ccAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGa                                   >  2:3690564/1‑93 (MQ=255)

                                                       cAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGAc                                  >  2:1228707/1‑93 (MQ=255)

                                                       cAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGAc                                  <  2:5182706/93‑1 (MQ=255)

                                                        aGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAAGTGGGGCTGAcc                                 >  1:202113/1‑93 (MQ=255)

                                                        aGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGAcc                                 >  1:1529194/1‑93 (MQ=255)

                                                        aGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGAcc                                 >  2:3931989/1‑93 (MQ=255)

                                                        aGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGAcc                                 >  1:1721073/1‑93 (MQ=255)

                                                         gCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCa                                >  1:3237686/1‑93 (MQ=255)

                                                         gCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCa                                <  2:3050059/93‑1 (MQ=255)

                                                         gCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCa                                <  2:1328063/93‑1 (MQ=255)

                                                           cTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATg                              >  2:3330524/1‑93 (MQ=255)

                                                           cTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATg                              >  2:4543564/1‑93 (MQ=255)

                                                           cTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATg                              <  1:1612032/93‑1 (MQ=255)

                                                            tGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATgg                             <  1:4555110/93‑1 (MQ=255)

                                                            tGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATgg                             >  2:3272022/1‑93 (MQ=255)

                                                            tGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATgg                             >  2:4789604/1‑93 (MQ=255)

                                                             gAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGt                            >  1:4619541/1‑93 (MQ=255)

                                                             gAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGt                            <  2:4181225/93‑1 (MQ=255)

                                                              aGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGtt                           >  1:3958756/1‑93 (MQ=255)

                                                               gTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTtg                          >  2:5675447/1‑93 (MQ=255)

                                                                tttGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTtga                         <  2:1523882/93‑1 (MQ=255)

                                                                  tGCGTGAAGTGGAGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTtgatg                       >  1:332155/1‑93 (MQ=255)

                                                                   gCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTtgatga                      <  2:1620433/93‑1 (MQ=255)

                                                                    cGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATgag                     <  1:871663/93‑1 (MQ=255)

                                                                    cGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATgag                     >  2:4820797/1‑93 (MQ=255)

                                                                     gTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATgaga                    <  2:2944732/93‑1 (MQ=255)

                                                                     gTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATgaga                    >  2:4631999/1‑93 (MQ=255)

                                                                     gTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATgaga                    <  2:5301937/93‑1 (MQ=255)

                                                                      tGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGagag                   <  2:3794610/93‑1 (MQ=255)

                                                                      tGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGagag                   >  1:3677421/1‑93 (MQ=255)

                                                                        aaGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCg                 >  2:6005833/1‑93 (MQ=255)

                                                                         aGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCgg                >  1:4127407/1‑93 (MQ=255)

                                                                           tGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCAACGTAGACGAACTGGGCCTGACCAGGGTGGTTAAGGGCGGtt              >  2:545146/1‑93 (MQ=255)

                                                                            ggCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGttt             <  2:2284054/93‑1 (MQ=255)

                                                                             gcgcGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTa            >  2:703075/1‑93 (MQ=255)

                                                                             gcgcGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTa            <  1:1460720/93‑1 (MQ=255)

                                                                                  tGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCt       <  1:962483/93‑1 (MQ=255)

                                                                                   gAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTa      >  1:446814/1‑93 (MQ=255)

                                                                                    aaGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTAc     >  2:3867863/1‑93 (MQ=255)

                                                                                    aaGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACAAACTGGGCCTCACCATGGTTGATGAGAGCGGCTTAATGCTAc     >  1:4801489/1‑93 (MQ=255)

                                                                                     aGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTACg    >  1:811492/1‑93 (MQ=255)

                                                                                     aGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTACg    >  2:5108130/1‑93 (MQ=255)

                                                                                      gCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTACGc   >  2:2037879/1‑93 (MQ=255)

                                                                                      gCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTACGc   <  2:3656790/93‑1 (MQ=255)

                                                                                       cGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGGCTGACCATGGTTGATGAGTGCGGCTTAATGCTACGcc  >  1:5061859/1‑93 (MQ=255)

GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTACGCC  >  NC_000913/4158737‑4158916

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCCGCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACT  >  NC_000913/4158734‑4158920

CCCGCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGT                                                                                               >  SRR4302534.1029620/1‑94 (MQ=60)

CCCGCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGT                                                                                               <  SRR4302534.307560/94‑1 (MQ=60)

 CCGCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTC                                                                                              <  SRR4302534.4325832/94‑1 (MQ=60)

 CCGCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTC                                                                                              >  SRR4302534.4628489/1‑94 (MQ=60)

 CCGCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTC                                                                                              >  SRR4302534.3549320/1‑94 (MQ=60)

 CCGCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTC                                                                                              <  SRR4302534.6394415/94‑1 (MQ=60)

   GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCAT                                                                                            >  SRR4302534.2980665/1‑94 (MQ=60)

   GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCAT                                                                                            <  SRR4302534.1425036/94‑1 (MQ=60)

    CCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATT                                                                                           <  SRR4302534.1125485/94‑1 (MQ=60)

     CGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTG                                                                                          >  SRR4302534.5542958/1‑94 (MQ=60)

     CGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTG                                                                                          <  SRR4302534.1253615/94‑1 (MQ=60)

      GTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGC                                                                                         >  SRR4302534.4870764/1‑94 (MQ=60)

       TTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCT                                                                                        <  SRR4302534.298074/94‑1 (MQ=60)

       TTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCT                                                                                        <  SRR4302534.1263054/94‑1 (MQ=60)

       TTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCT                                                                                        >  SRR4302534.4974779/1‑94 (MQ=60)

        TCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTC                                                                                       <  SRR4302534.1001551/94‑1 (MQ=60)

         CGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCC                                                                                      >  SRR4302534.3755071/1‑94 (MQ=60)

          GCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCC                                                                                     >  SRR4302534.3486911/1‑94 (MQ=60)

           CTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCA                                                                                    >  SRR4302534.4513023/1‑94 (MQ=60)

           CTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCA                                                                                    >  SRR4302534.1519954/1‑94 (MQ=60)

               TGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTC                                                                                <  SRR4302534.5518752/94‑1 (MQ=60)

                GGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCT                                                                               <  SRR4302534.880133/94‑1 (MQ=60)

                 GAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTTCCACCTCTT                                                                              <  SRR4302534.6490857/94‑1 (MQ=60)

                  AAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTT                                                                             <  SRR4302534.2594868/94‑1 (MQ=60)

                  AAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTT                                                                             <  SRR4302534.4550641/94‑1 (MQ=60)

                   AGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTT                                                                            >  SRR4302534.3200639/1‑94 (MQ=60)

                    GCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTT                                                                           <  SRR4302534.6211186/94‑1 (MQ=60)

                    ACCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTT                                                                           <  SRR4302534.6360266/94‑1 (MQ=60)

                     CCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTA                                                                          <  SRR4302534.5249384/94‑1 (MQ=60)

                         ATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGG                                                                      >  SRR4302534.3900466/1‑94 (MQ=60)

                          TTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGC                                                                     <  SRR4302534.6482119/94‑1 (MQ=60)

                           TTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCA                                                                    <  SRR4302534.2338983/94‑1 (MQ=60)

                            TAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCAT                                                                   <  SRR4302534.6166230/94‑1 (MQ=60)

                            TAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCAT                                                                   >  SRR4302534.1645419/1‑94 (MQ=60)

                             AGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATT                                                                  <  SRR4302534.6503597/94‑1 (MQ=60)

                             AGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATT                                                                  >  SRR4302534.760936/1‑94 (MQ=60)

                             AGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATT                                                                  >  SRR4302534.6210953/1‑94 (MQ=60)

                               CCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTC                                                                <  SRR4302534.5041950/94‑1 (MQ=60)

                               CCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTC                                                                <  SRR4302534.2242283/94‑1 (MQ=60)

                                CAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCC                                                               <  SRR4302534.3398113/94‑1 (MQ=60)

                                 AATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCG                                                              <  SRR4302534.2282577/94‑1 (MQ=60)

                                 AATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCG                                                              <  SRR4302534.3788967/94‑1 (MQ=60)

                                 AATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCG                                                              <  SRR4302534.2846743/94‑1 (MQ=60)

                                 AATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCG                                                              >  SRR4302534.704615/1‑94 (MQ=60)

                                  ATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGC                                                             <  SRR4302534.3508187/94‑1 (MQ=60)

                                   TTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCG                                                            >  SRR4302534.5353950/1‑94 (MQ=60)

                                    TAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGA                                                           >  SRR4302534.4443318/1‑94 (MQ=60)

                                     AAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGAC                                                          >  SRR4302534.6123388/1‑94 (MQ=60)

                                      AGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACG                                                         >  SRR4302534.714204/1‑94 (MQ=60)

                                      AGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACG                                                         >  SRR4302534.4689689/1‑94 (MQ=60)

                                       GTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGT                                                        >  SRR4302534.5215473/1‑94 (MQ=60)

                                        TGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTA                                                       <  SRR4302534.3303690/94‑1 (MQ=60)

                                        TGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGGGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTATTTCGGCATTTCCGCGACGTA                                                       >  SRR4302534.5013352/1‑94 (MQ=60)

                                          CTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGA                                                     <  SRR4302534.5273875/94‑1 (MQ=60)

                                          CTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGA                                                     >  SRR4302534.3271508/1‑94 (MQ=60)

                                           TGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTTCGCGACGTAGAC                                                    >  SRR4302534.3930199/1‑94 (MQ=60)

                                           TGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGAC                                                    >  SRR4302534.1636568/1‑94 (MQ=60)

                                            GAACGCAGCTTCGCCGGCCTGAGTTTGCGTGAAGTGGCGCGTGAGGCGGTCATTGCTCCCACCTCTTTTTACCGGCATTTCCGCGACGTAGACG                                                   <  SRR4302534.6041606/94‑1 (MQ=60)

                                            GAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACG                                                   <  SRR4302534.5637520/94‑1 (MQ=60)

                                            GAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCCACGTAGACG                                                   <  SRR4302534.6495889/94‑1 (MQ=60)

                                             AACGCAGCTTCGCCCGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGA                                                  >  SRR4302534.6368238/1‑94 (MQ=60)

                                             AACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGGAGGGCCGGAAGCGGTCATTGCTGCCACCTCCTTTTATCGGCATTTCCGCGCCGTAGACGA                                                  >  SRR4302534.4689912/1‑94 (MQ=53)

                                              ACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAA                                                 >  SRR4302534.107620/1‑94 (MQ=60)

                                              ACGCAGCGTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACATCTTTTTATCGGCATTTCCGCGACGTAGACGAA                                                 >  SRR4302534.5501345/1‑94 (MQ=60)

                                                GCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACT                                               <  SRR4302534.377460/94‑1 (MQ=60)

                                                GCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACT                                               <  SRR4302534.2829254/94‑1 (MQ=60)

                                                GCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACT                                               <  SRR4302534.2969854/94‑1 (MQ=60)

                                                 CAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTG                                              >  SRR4302534.4513503/1‑94 (MQ=60)

                                                  AGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGG                                             <  SRR4302534.5887425/94‑1 (MQ=60)

                                                  AGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGG                                             >  SRR4302534.6508708/1‑94 (MQ=60)

                                                   GCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGG                                            <  SRR4302534.1700459/94‑1 (MQ=60)

                                                     TTCGCCAGCGTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTC                                          <  SRR4302534.1573642/94‑1 (MQ=60)

                                                        GCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGA                                       <  SRR4302534.5278789/94‑1 (MQ=60)

                                                        GCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGA                                       <  SRR4302534.2063273/94‑1 (MQ=60)

                                                          CAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAAGTGGGGCTGACC                                     >  SRR4302534.207420/1‑94 (MQ=60)

                                                          CAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACC                                     >  SRR4302534.1765785/1‑94 (MQ=60)

                                                          CAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACC                                     >  SRR4302534.1569318/1‑94 (MQ=60)

                                                           AGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCA                                    >  SRR4302534.5154843/1‑94 (MQ=60)

                                                           AGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCA                                    >  SRR4302534.3323814/1‑94 (MQ=60)

                                                           AGCCGGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCA                                    <  SRR4302534.612950/94‑1 (MQ=60)

                                                            GCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCAT                                   >  SRR4302534.984087/1‑94 (MQ=60)

                                                             CCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATG                                  >  SRR4302534.4809657/1‑94 (MQ=60)

                                                             CCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATG                                  >  SRR4302534.5481650/1‑94 (MQ=60)

                                                             CCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATG                                  >  SRR4302534.915728/1‑94 (MQ=60)

                                                              CTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGG                                 <  SRR4302534.1654109/94‑1 (MQ=60)

                                                              CTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACGGGGTCTGACCATGG                                 >  SRR4302534.1635944/1‑94 (MQ=60)

                                                               TGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGT                                >  SRR4302534.4744892/1‑94 (MQ=60)

                                                               TGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGT                                <  SRR4302534.4191690/94‑1 (MQ=60)

                                                               TGAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGT                                <  SRR4302534.4678602/94‑1 (MQ=60)

                                                                GAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTT                               <  SRR4302534.673410/94‑1 (MQ=60)

                                                                GAGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTT                               >  SRR4302534.4064755/1‑94 (MQ=60)

                                                                 AGTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTG                              >  SRR4302534.1455442/1‑94 (MQ=60)

                                                                  GTTTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGA                             <  SRR4302534.6124736/94‑1 (MQ=60)

                                                                    TTGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATG                           <  SRR4302534.3464947/94‑1 (MQ=60)

                                                                    TTGCGTGAAGTGGAGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATG                           >  SRR4302534.340691/1‑94 (MQ=60)

                                                                     TGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGA                          <  SRR4302534.3762594/94‑1 (MQ=60)

                                                                     TGCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGA                          <  SRR4302534.3970247/94‑1 (MQ=60)

                                                                      GCGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAG                         <  SRR4302534.1373221/94‑1 (MQ=60)

                                                                       CGTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGA                        <  SRR4302534.893687/94‑1 (MQ=60)

                                                                        GTGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAG                       >  SRR4302534.3776291/1‑94 (MQ=60)

                                                                         TGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGGCCATGGTTGATGAGAGC                      <  SRR4302534.374612/94‑1 (MQ=60)

                                                                         TGAAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGG                      >  SRR4302534.4675560/1‑94 (MQ=60)

                                                                           AAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGG                    >  SRR4302534.4238547/1‑94 (MQ=60)

                                                                           AAGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGG                    >  SRR4302534.6573680/1‑94 (MQ=60)

                                                                            AGTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGT                   <  SRR4302534.4707771/94‑1 (MQ=60)

                                                                             GTGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTT                  <  SRR4302534.6189347/94‑1 (MQ=60)

                                                                              TGGCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGGTT                 >  SRR4302534.5652135/1‑94 (MQ=60)

                                                                                GCGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAA               <  SRR4302534.1499130/94‑1 (MQ=60)

                                                                                 CGCGTGAAGCGGTCATTGCTCCCGCCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAAT              <  SRR4302534.2627271/94‑1 (MQ=60)

                                                                                 CGCGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAAT              >  SRR4302534.1851113/1‑94 (MQ=60)

                                                                                   CGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGC            <  SRR4302534.4951638/94‑1 (MQ=60)

                                                                                   CGTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGC            >  SRR4302534.4546065/1‑94 (MQ=60)

                                                                                    GTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTCATGCT           >  SRR4302534.2591910/1‑94 (MQ=60)

                                                                                    GTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCT           <  SRR4302534.6001563/94‑1 (MQ=60)

                                                                                    GTGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCT           >  SRR4302534.1760100/1‑94 (MQ=60)

                                                                                     TGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGACCTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTA          <  SRR4302534.1554565/94‑1 (MQ=60)

                                                                                     TGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTA          <  SRR4302534.987003/94‑1 (MQ=60)

                                                                                     TGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTA          >  SRR4302534.458142/1‑94 (MQ=60)

                                                                                     TGAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTA          >  SRR4302534.2907136/1‑94 (MQ=60)

                                                                                      GAAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACAAACTGGGCCTCACCATGGTTGATGAGAGCGGCTTAATGCTAC         >  SRR4302534.4931870/1‑94 (MQ=60)

                                                                                       AAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTACG        >  SRR4302534.831883/1‑94 (MQ=60)

                                                                                       AAGCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTACG        <  SRR4302534.3704766/94‑1 (MQ=60)

                                                                                         GCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTACGCC      <  SRR4302534.5241536/94‑1 (MQ=60)

                                                                                         GCGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGGCTGACCATGGTTGATGAGTGCGGCTTAATGCTACGCC      >  SRR4302534.5198550/1‑94 (MQ=60)

                                                                                          CGGTCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTACGCCA     >  SRR4302534.4307999/1‑94 (MQ=60)

                                                                                             TCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACT  >  SRR4302534.4378603/1‑94 (MQ=60)

                                                                                             TCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACT  >  SRR4302534.3901709/1‑94 (MQ=60)

                                                                                             TCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACT  >  SRR4302534.2547751/1‑94 (MQ=60)

CCCGCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACT  >  NC_000913/4158734‑4158920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`