Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,337,885	A→G	V73A (GTC→GCC)	adiA ←	biodegradative arginine decarboxylase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,337,885	0	A	G	100.0%	904.9 / NA	257	V73A (GTC→GCC)	adiA	biodegradative arginine decarboxylase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (125/132); total (125/132)

Only 100 of 268 total aligned reads displayed.

TCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCAAAACCATCA  >  NC_000913/4337795‑4337974

tCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCg                                                                                         >  1:3743945/1‑93 (MQ=255)

tCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCg                                                                                         >  2:2759155/1‑93 (MQ=255)

 ccATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGt                                                                                        >  1:1093987/1‑93 (MQ=255)

 ccATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGt                                                                                        >  1:926695/1‑93 (MQ=255)

 ccATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGt                                                                                        >  2:1957177/1‑93 (MQ=255)

  cATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGtt                                                                                       >  1:5133966/1‑93 (MQ=255)

   aTTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGttt                                                                                      <  2:3703351/93‑1 (MQ=255)

   aTTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGttt                                                                                      <  2:2119373/93‑1 (MQ=255)

   aTTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGttt                                                                                      >  1:27026/1‑93 (MQ=255)

   aTTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGttt                                                                                      >  1:6052248/1‑93 (MQ=255)

   aTTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAACTTACCGATCAAATGTCTGGCGttt                                                                                      >  2:3348554/1‑93 (MQ=255)

     tGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTg                                                                                    <  1:3850294/93‑1 (MQ=255)

      gcggcgAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGa                                                                                   >  2:2595942/1‑93 (MQ=255)

      gcggcgAGGGCTTTCTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGa                                                                                   <  1:3391936/93‑1 (MQ=255)

        ggcgAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATg                                                                                 >  2:2559815/1‑93 (MQ=255)

        ggcgAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATg                                                                                 <  1:3514394/93‑1 (MQ=255)

          cgAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGtt                                                                               <  2:5151379/93‑1 (MQ=255)

              ggCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTc                                                                           >  1:5093263/1‑93 (MQ=255)

              ggCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTc                                                                           <  1:5528528/93‑1 (MQ=255)

              ggCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTc                                                                           >  2:1080119/1‑93 (MQ=255)

              ggCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTc                                                                           <  1:5736968/93‑1 (MQ=255)

              ggCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTc                                                                           <  1:5775826/93‑1 (MQ=255)

              ggCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTc                                                                           <  1:5946392/93‑1 (MQ=255)

              ggCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTc                                                                           <  2:1673791/93‑1 (MQ=255)

              ggCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTc                                                                           <  2:3797422/93‑1 (MQ=255)

              ggCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTc                                                                           <  1:1368691/93‑1 (MQ=255)

               gCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTcc                                                                          <  1:5471303/93‑1 (MQ=255)

               gCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTcc                                                                          >  1:5294806/1‑93 (MQ=255)

                 tttttCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCgg                                                                        >  1:3503469/1‑93 (MQ=255)

                  ttttCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGa                                                                       <  1:5335691/93‑1 (MQ=255)

                   tttCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGAt                                                                      >  2:4435718/1‑93 (MQ=255)

                   tttCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGAt                                                                      >  1:5564185/1‑93 (MQ=255)

                       ccGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATCTTc                                                                  <  1:6173217/93‑1 (MQ=255)

                        cGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTcc                                                                 >  2:1613943/1‑93 (MQ=255)

                         gATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCa                                                                >  1:4393011/1‑93 (MQ=255)

                         gATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCa                                                                >  2:2368650/1‑93 (MQ=255)

                          aTCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCAt                                                               <  1:5242582/93‑1 (MQ=255)

                           tCGCCCAACAGGAATACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCAtt                                                              <  1:6273741/93‑1 (MQ=255)

                           tCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCAtt                                                              >  2:1270616/1‑93 (MQ=255)

                            cGCCGAACAGGAGGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTGCCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCAttt                                                             <  2:5702540/93‑1 (MQ=255)

                             gCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTg                                                            >  1:5921905/1‑93 (MQ=255)

                              cccAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGa                                                           <  2:916109/93‑1 (MQ=255)

                              cccAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGa                                                           >  1:5638918/1‑93 (MQ=255)

                               ccAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGAt                                                          >  1:29075/1‑93 (MQ=255)

                                cAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATa                                                         >  2:4871014/1‑93 (MQ=255)

                                cAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATa                                                         >  2:4087258/1‑93 (MQ=255)

                                  aCAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAga                                                       >  2:6128443/1‑92 (MQ=255)

                                  aCAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGc                                                       >  1:4999562/1‑93 (MQ=255)

                                  aCAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGc                                                       >  2:3358807/1‑93 (MQ=255)

                                  aCAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGCGGTTTTGTTGTTCGTCCGGATGTTCCTTTTGTTAgt                                                       >  1:1522516/1‑92 (MQ=255)

                                    aGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTg                                                     >  2:3728606/1‑93 (MQ=255)

                                        aGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACa                                                 >  2:4408963/1‑93 (MQ=255)

                                         gACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACAt                                                >  2:5135373/1‑93 (MQ=255)

                                          aCCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATc                                               <  2:2073384/93‑1 (MQ=255)

                                           ccGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCa                                              >  2:6173495/1‑93 (MQ=255)

                                            cGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAg                                             <  1:4200827/93‑1 (MQ=255)

                                            cGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAg                                             <  1:6095678/93‑1 (MQ=255)

                                             ggCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAgg                                            >  2:5605977/1‑93 (MQ=255)

                                             ggCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAgg                                            >  2:3396580/1‑93 (MQ=255)

                                                ccGTTTTGTTGGCGCTCATGAAGCTTACGGATCAATGGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAg                                         <  1:766010/92‑1 (MQ=255)

                                                  gTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTc                                       <  1:4457326/93‑1 (MQ=255)

                                                     ttgttgGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAAt                                    <  1:1713066/93‑1 (MQ=255)

                                                      tgttgGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATg                                   <  1:3233002/93‑1 (MQ=255)

                                                        ttgGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGc                                 >  2:5915722/1‑93 (MQ=255)

                                                         tgGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCt                                <  2:4919906/93‑1 (MQ=255)

                                                         tgGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCt                                >  2:3828348/1‑93 (MQ=255)

                                                         tgGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCt                                <  2:6331875/93‑1 (MQ=255)

                                                          ggCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCtt                               >  2:5439197/1‑93 (MQ=255)

                                                          ggCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCtt                               >  2:3767364/1‑93 (MQ=255)

                                                          ggCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCtt                               <  2:4310042/93‑1 (MQ=255)

                                                           gcgcTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTc                              <  2:6217523/93‑1 (MQ=255)

                                                             gcTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGt                            <  1:2023501/93‑1 (MQ=255)

                                                             gcTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGt                            <  2:4013696/93‑1 (MQ=255)

                                                              cTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGtt                           >  2:3014851/1‑93 (MQ=255)

                                                                cATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTg                         <  2:2685580/93‑1 (MQ=255)

                                                                cATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTg                         >  2:393423/1‑93 (MQ=255)

                                                                  tGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGaa                       <  2:5809753/93‑1 (MQ=255)

                                                                   gAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGTag                      >  1:4488289/1‑93 (MQ=255)

                                                                   gAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAag                      >  1:3997018/1‑93 (MQ=255)

                                                                    aaGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAaga                     <  2:1769241/93‑1 (MQ=255)

                                                                       cTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAagagag                  <  2:385897/93‑1 (MQ=255)

                                                                       cTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAagagag                  <  1:2161093/93‑1 (MQ=255)

                                                                          aCCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAAt               <  1:2585846/93‑1 (MQ=255)

                                                                          aCCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAAt               >  2:2216220/1‑93 (MQ=255)

                                                                          aCCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAAt               >  2:5073575/1‑93 (MQ=255)

                                                                          aCCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAAt               <  1:12223/93‑1 (MQ=255)

                                                                           ccGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATg              <  1:2200436/93‑1 (MQ=255)

                                                                           ccGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATg              >  2:4989105/1‑93 (MQ=255)

                                                                           ccGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATATTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGTATg              >  1:2238758/1‑93 (MQ=255)

                                                                             gATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGc            <  1:4720725/93‑1 (MQ=255)

                                                                             actCAATTGTCTGGCGTTTTGATGTTCGTCCGGCTGTTCCATTTGATAGCTGAACATCAGGCAGTCAATAGCTTCGTTTGTAGAGAGACTgta            >  1:1892168/3‑91 (MQ=255)

                                                                              aTCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCa           <  2:1380768/93‑1 (MQ=255)

                                                                               tCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATGTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCaa          <  1:6463020/93‑1 (MQ=255)

                                                                                cAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCaaa         >  2:2263544/1‑93 (MQ=255)

                                                                                 aaTTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCaaaa        >  1:712296/1‑93 (MQ=255)

                                                                                  aTTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCAAAAc       <  1:1022209/93‑1 (MQ=255)

                                                                                  aTTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCAAAAc       >  2:712207/1‑93 (MQ=255)

                                                                                   ttGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCAAAAcc      >  2:2799419/1‑93 (MQ=255)

                                                                                       cTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCAAAACcatca  >  1:2484871/1‑93 (MQ=255)

                                                                                       cTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCAAAACcatca  >  1:3104233/1‑93 (MQ=255)

TCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCAAAACCATCA  >  NC_000913/4337795‑4337974

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCAAAACCATCATCA  >  NC_000913/4337792‑4337977

CGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGG                                                                                              >  SRR4302534.2465192/1‑94 (MQ=60)

CGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGG                                                                                              >  SRR4302534.6500234/1‑94 (MQ=60)

CGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGG                                                                                              <  SRR4302534.1509676/94‑1 (MQ=60)

CGATCCATTGCGGCGAGGACTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGG                                                                                              >  SRR4302534.6048340/1‑94 (MQ=60)

 GATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGC                                                                                             >  SRR4302534.4960605/1‑94 (MQ=60)

 GATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGC                                                                                             >  SRR4302534.3820784/1‑94 (MQ=60)

 GATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGC                                                                                             >  SRR4302534.134872/1‑94 (MQ=60)

  ATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCG                                                                                            >  SRR4302534.3844529/1‑94 (MQ=60)

  ATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCG                                                                                            <  SRR4302534.2259687/94‑1 (MQ=60)

  ATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCG                                                                                            >  SRR4302534.791884/1‑94 (MQ=60)

   TCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGT                                                                                           >  SRR4302534.950287/1‑94 (MQ=60)

   TCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGT                                                                                           >  SRR4302534.1122445/1‑94 (MQ=60)

    CCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTT                                                                                          <  SRR4302534.5685508/94‑1 (MQ=60)

    CCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTT                                                                                          >  SRR4302534.5272558/1‑94 (MQ=60)

     CATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTT                                                                                         >  SRR4302534.27748/1‑94 (MQ=60)

     CATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTT                                                                                         >  SRR4302534.1132259/1‑94 (MQ=60)

     CATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTT                                                                                         <  SRR4302534.3116915/94‑1 (MQ=60)

     CATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTT                                                                                         >  SRR4302534.3461676/1‑94 (MQ=60)

     CATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTT                                                                                         >  SRR4302534.6216829/1‑94 (MQ=60)

     CATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTT                                                                                         >  SRR4302534.4745676/1‑94 (MQ=60)

      ATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTT                                                                                        <  SRR4302534.6091688/94‑1 (MQ=60)

        TGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGA                                                                                      <  SRR4302534.3953689/94‑1 (MQ=60)

        TGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGA                                                                                      >  SRR4302534.4170237/1‑94 (MQ=60)

         GCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGAT                                                                                     <  SRR4302534.4287817/94‑1 (MQ=60)

         GCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGAT                                                                                     <  SRR4302534.807404/94‑1 (MQ=60)

         GCGGCGAGGGCTTTCTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGAT                                                                                     <  SRR4302534.3482917/94‑1 (MQ=60)

          CGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATG                                                                                    <  SRR4302534.2017571/94‑1 (MQ=60)

           GGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGT                                                                                   <  SRR4302534.3608927/94‑1 (MQ=60)

           GGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGT                                                                                   >  SRR4302534.2154170/1‑94 (MQ=60)

            GCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTT                                                                                  >  SRR4302534.1110809/1‑94 (MQ=60)

            GCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTT                                                                                  <  SRR4302534.5903217/94‑1 (MQ=60)

             CGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTATCGATCAATTGTCTGGCGTTTTGATGTTT                                                                                 >  SRR4302534.6079640/1‑94 (MQ=60)

                GGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGGGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTC                                                                              >  SRR4302534.6200098/1‑94 (MQ=60)

                GGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTC                                                                              >  SRR4302534.5230750/1‑94 (MQ=60)

                GGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTC                                                                              <  SRR4302534.5069960/94‑1 (MQ=60)

                 GGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCC                                                                             <  SRR4302534.5677735/94‑1 (MQ=60)

                 GGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCC                                                                             <  SRR4302534.5932505/94‑1 (MQ=60)

                 GGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCC                                                                             <  SRR4302534.5892443/94‑1 (MQ=60)

                 GGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCC                                                                             <  SRR4302534.1404747/94‑1 (MQ=60)

                 GGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCC                                                                             >  SRR4302534.5462186/1‑94 (MQ=60)

                 GGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCC                                                                             <  SRR4302534.6107850/94‑1 (MQ=60)

                 GGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCC                                                                             >  SRR4302534.5437717/1‑94 (MQ=60)

                  GCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCG                                                                            <  SRR4302534.5618810/94‑1 (MQ=60)

                   CTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGG                                                                           >  SRR4302534.3597712/1‑94 (MQ=60)

                    TTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGA                                                                          <  SRR4302534.2914628/94‑1 (MQ=60)

                    TTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGA                                                                          >  SRR4302534.5483474/1‑94 (MQ=60)

                     TTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGAT                                                                         <  SRR4302534.5479560/94‑1 (MQ=60)

                     TTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGAT                                                                         >  SRR4302534.5714425/1‑94 (MQ=60)

                        TCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTGATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTT                                                                      <  SRR4302534.6546943/94‑1 (MQ=60)

                        TCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTT                                                                      <  SRR4302534.2226344/94‑1 (MQ=60)

                        TCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTT                                                                      <  SRR4302534.6226247/94‑1 (MQ=60)

                         CCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTC                                                                     <  SRR4302534.5899681/94‑1 (MQ=60)

                         CCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTC                                                                     <  SRR4302534.131201/94‑1 (MQ=60)

                          CCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCC                                                                    <  SRR4302534.6009688/94‑1 (MQ=60)

                          CCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATCTTCC                                                                    <  SRR4302534.6341159/94‑1 (MQ=60)

                           CGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCA                                                                   >  SRR4302534.4511490/1‑94 (MQ=60)

                            GATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCAT                                                                  <  SRR4302534.1160318/94‑1 (MQ=60)

                             ATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATT                                                                 <  SRR4302534.5598972/94‑1 (MQ=60)

                             ATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATT                                                                 <  SRR4302534.5384164/94‑1 (MQ=60)

                              TCGCCCAACAGGAATACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTT                                                                <  SRR4302534.6443575/94‑1 (MQ=60)

                              TCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTT                                                                <  SRR4302534.4002743/94‑1 (MQ=60)

                              TCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTT                                                                >  SRR4302534.746905/1‑94 (MQ=60)

                              TCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTT                                                                <  SRR4302534.5646947/94‑1 (MQ=60)

                              TCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTT                                                                >  SRR4302534.1019551/1‑94 (MQ=60)

                               CGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTG                                                               <  SRR4302534.3386241/94‑1 (MQ=60)

                               CGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTG                                                               <  SRR4302534.4517494/94‑1 (MQ=60)

                               CGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTG                                                               >  SRR4302534.6082692/1‑94 (MQ=60)

                                gcctagccggaagctcatcacgttctgcTGGCGCTCATGAACCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCGATTTGA                                                              <  SRR4302534.5661452/66‑1 (MQ=60)

                                GCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGA                                                              >  SRR4302534.5791545/1‑94 (MQ=60)

                                GCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGA                                                              >  SRR4302534.5442637/1‑94 (MQ=60)

                                 CCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGAT                                                             >  SRR4302534.391805/1‑94 (MQ=60)

                                 CCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGAT                                                             >  SRR4302534.29862/1‑94 (MQ=60)

                                  CCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATA                                                            >  SRR4302534.3275109/1‑94 (MQ=60)

                                  CCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATA                                                            >  SRR4302534.616128/1‑94 (MQ=60)

                                  CCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATA                                                            >  SRR4302534.2220728/1‑94 (MQ=60)

                                   CAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAG                                                           >  SRR4302534.2975832/1‑94 (MQ=60)

                                    AACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGC                                                          >  SRR4302534.4592690/1‑94 (MQ=60)

                                    AACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGC                                                          >  SRR4302534.5134737/1‑94 (MQ=60)

                                    AACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGCGGTTTTGTTGTTCGTCCGGATGTTCCttttgttagt                                                          >  SRR4302534.1562488/1‑84 (MQ=60)

                                     ACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCT                                                         >  SRR4302534.734059/1‑94 (MQ=60)

                                     ACAGGAAGAACGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCT                                                         <  SRR4302534.6482005/94‑1 (MQ=60)

                                      CAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTG                                                        <  SRR4302534.5792632/94‑1 (MQ=60)

                                       AGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGA                                                       <  SRR4302534.5194224/94‑1 (MQ=60)

                                           AGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACAT                                                   <  SRR4302534.4535140/94‑1 (MQ=60)

                                           AGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACAT                                                   >  SRR4302534.2082868/1‑94 (MQ=60)

                                           AGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACAT                                                   >  SRR4302534.3608344/1‑94 (MQ=60)

                                            GACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATC                                                  <  SRR4302534.5370678/94‑1 (MQ=60)

                                            GACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATC                                                  <  SRR4302534.4322082/94‑1 (MQ=60)

                                              CCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAG                                                <  SRR4302534.2386657/94‑1 (MQ=60)

                                               TGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGG                                               >  SRR4302534.2268206/1‑94 (MQ=60)

                                               CGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGG                                               <  SRR4302534.6261439/94‑1 (MQ=60)

                                               CGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGG                                               >  SRR4302534.5732177/1‑94 (MQ=60)

                                               CGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGG                                               <  SRR4302534.4314265/94‑1 (MQ=60)

                                                  CACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAG                                            >  SRR4302534.3699339/1‑94 (MQ=60)

                                                   CCGTTTTGTTGGCGCTCATGAAGCTTACGGATCAATGGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGT                                           <  SRR4302534.785046/94‑1 (MQ=60)

                                                    CGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTC                                          <  SRR4302534.6292836/94‑1 (MQ=60)

                                                     GTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCA                                         <  SRR4302534.4577819/94‑1 (MQ=60)

                                                        TTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATG                                      <  SRR4302534.1757562/94‑1 (MQ=60)

                                                         TGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGG                                     <  SRR4302534.3318942/94‑1 (MQ=60)

                                                         TGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGG                                     >  SRR4302534.3515720/1‑94 (MQ=60)

                                                            TGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTT                                  <  SRR4302534.3855353/94‑1 (MQ=60)

                                                            TGGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTT                                  >  SRR4302534.5952638/1‑94 (MQ=60)

                                                             GGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTC                                 <  SRR4302534.6378/94‑1 (MQ=60)

                                                             GGCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTC                                 <  SRR4302534.4610245/94‑1 (MQ=60)

                                                              GCGCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCG                                <  SRR4302534.1867270/94‑1 (MQ=60)

                                                                GCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTT                              >  SRR4302534.1718567/1‑94 (MQ=60)

                                                                GCTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTT                              <  SRR4302534.2076433/94‑1 (MQ=60)

                                                                 CTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATTGCTTCGTTT                             <  SRR4302534.4950404/94‑1 (MQ=60)

                                                                 CTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTT                             >  SRR4302534.577513/1‑94 (MQ=60)

                                                                 CTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTT                             <  SRR4302534.2377543/94‑1 (MQ=60)

                                                                 CTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTT                             >  SRR4302534.6225403/1‑94 (MQ=60)

                                                                 CTCATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTT                             <  SRR4302534.1554911/94‑1 (MQ=60)

                                                                   CATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGA                           >  SRR4302534.2625855/1‑94 (MQ=60)

                                                                    ATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAA                          >  SRR4302534.3551555/1‑94 (MQ=60)

                                                                    ATGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAA                          <  SRR4302534.3081621/94‑1 (MQ=60)

                                                                     TGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGTAG                         >  SRR4302534.4609747/1‑94 (MQ=60)

                                                                     TGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAG                         >  SRR4302534.4104018/1‑94 (MQ=60)

                                                                     TGAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAG                         <  SRR4302534.5707130/94‑1 (MQ=60)

                                                                      GAAGCTTTCCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGA                        <  SRR4302534.705641/94‑1 (MQ=60)

                                                                      GAAGCTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGA                        <  SRR4302534.3822093/94‑1 (MQ=60)

                                                                          CTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGA                    <  SRR4302534.5435985/94‑1 (MQ=60)

                                                                          CTTACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGA                    <  SRR4302534.2218169/94‑1 (MQ=60)

                                                                            TACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAAT                  >  SRR4302534.1691629/1‑94 (MQ=60)

                                                                            TACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAAT                  >  SRR4302534.6372459/1‑94 (MQ=60)

                                                                             ACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGATTG                 <  SRR4302534.5253560/94‑1 (MQ=60)

                                                                             ACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATG                 <  SRR4302534.2654305/94‑1 (MQ=60)

                                                                             ACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATG                 <  SRR4302534.12545/94‑1 (MQ=60)

                                                                             ACCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATATTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGTATG                 >  SRR4302534.2298085/1‑94 (MQ=60)

                                                                             ACCAATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAGTG                 <  SRR4302534.5253559/94‑1 (MQ=60)

                                                                              CCGATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGG                <  SRR4302534.2258665/94‑1 (MQ=60)

                                                                               cacTCAATTGTCTGGCGTTTTGATGTTCGTCCGGCTGTTCCATTTGATAGCTGAACATCAGGCAGTCAATAGCTTCGTTTGTAGAGAGActgta               >  SRR4302534.1941520/4‑89 (MQ=60)

                                                                                GATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCA              >  SRR4302534.1325227/1‑94 (MQ=60)

                                                                                GATCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCA              <  SRR4302534.4848927/94‑1 (MQ=60)

                                                                                  TCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGTCAAA            <  SRR4302534.2636850/94‑1 (MQ=60)

                                                                                  TCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCAAA            <  SRR4302534.2657126/94‑1 (MQ=60)

                                                                                  TCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCAAA            <  SRR4302534.4426616/94‑1 (MQ=60)

                                                                                  TCAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATGTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCAAA            <  SRR4302534.6637095/94‑1 (MQ=60)

                                                                                   CAATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCAAAA           >  SRR4302534.729806/1‑94 (MQ=60)

                                                                                    AATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCAAAAC          >  SRR4302534.1903930/1‑94 (MQ=60)

                                                                                     ATTGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCAAAACC         <  SRR4302534.1048529/94‑1 (MQ=60)

                                                                                       TGTCTGGCGTTTTGATGTTCGTCCGGATGTTCCCTTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCAAAACCAT       <  SRR4302534.5301844/94‑1 (MQ=60)

                                                                                         TCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCAAAACCATCA     >  SRR4302534.2550882/1‑94 (MQ=60)

                                                                                         TCTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCAAAACCATCA     >  SRR4302534.3185883/1‑94 (MQ=60)

                                                                                          CTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCAAAACCATCAT    >  SRR4302534.3416659/1‑94 (MQ=60)

                                                                                          CTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCAAAACCATCAT    >  SRR4302534.4741592/1‑94 (MQ=60)

                                                                                          CTGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCAAAACCATCAT    >  SRR4302534.4840833/1‑94 (MQ=60)

                                                                                           TGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCAAAACCATCATC   <  SRR4302534.2856617/94‑1 (MQ=60)

                                                                                           TGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCAAAACCATCATC   >  SRR4302534.5554963/1‑94 (MQ=60)

                                                                                           TGGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCAAAACCATCATC   >  SRR4302534.4396550/1‑94 (MQ=60)

                                                                                            GGCGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCAAAACCATCATCA  <  SRR4302534.517579/94‑1 (MQ=60)

CGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGAGAATGGCAAAACCATCATCA  >  NC_000913/4337792‑4337977

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`