Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 884 257.2 12958910 96.9% 12557183 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,389,966 A→G noncoding (29/76 nt) glyV → tRNA‑Gly

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,389,9660AG100.0% 753.8 / NA 219noncoding (29/76 nt)glyVtRNA‑Gly
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (134/85);  total (134/85)

Only 100 of 222 total aligned reads displayed.

ATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGA  >  NC_000913/4389876‑4390055
                                                                                          |                                                                                         
 taATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCt                                                                                        >  1:4656442/1‑93 (MQ=255)
  aaTGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCtt                                                                                       >  1:5174333/1‑93 (MQ=255)
  aaTGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCtt                                                                                       >  2:5157559/1‑93 (MQ=255)
   aTGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTg                                                                                      >  1:1783347/1‑93 (MQ=255)
     gcgcCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGcc                                                                                    >  1:1332956/1‑93 (MQ=255)
      cgcCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCa                                                                                   <  1:4853036/93‑1 (MQ=255)
       gcCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCaa                                                                                  >  2:5980588/1‑93 (MQ=255)
       gcCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCaa                                                                                  <  1:3546716/93‑1 (MQ=255)
       gcCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCaa                                                                                  >  1:170351/1‑93 (MQ=255)
       gcCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCaa                                                                                  <  1:1382012/93‑1 (MQ=255)
        ccTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAg                                                                                 <  2:431469/93‑1 (MQ=255)
        ccTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAg                                                                                 <  1:6329091/93‑1 (MQ=255)
         cTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAgg                                                                                <  2:3567357/93‑1 (MQ=255)
         cTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAgg                                                                                >  2:4599392/1‑93 (MQ=255)
          tCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGt                                                                               >  1:2354280/1‑93 (MQ=255)
          tCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGt                                                                               >  1:3659373/1‑93 (MQ=255)
          tCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGt                                                                               >  2:822199/1‑93 (MQ=255)
           cccGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTc                                                                              <  1:2776426/93‑1 (MQ=255)
           cccGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGCTGGTAGAGCACGGCCTTGCCAAGGTc                                                                              >  2:4764716/1‑93 (MQ=255)
             cGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCgg                                                                            <  1:1899602/93‑1 (MQ=255)
              gTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCggg                                                                           <  2:4328400/93‑1 (MQ=255)
              gTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCggg                                                                           >  2:1156213/1‑93 (MQ=255)
                 acgacgCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTc                                                                        <  2:957263/93‑1 (MQ=255)
                 acgacgCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTc                                                                        >  1:4586146/1‑93 (MQ=255)
                   gacgCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTcgc                                                                      >  2:1091282/1‑93 (MQ=255)
                   gacgCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTcgc                                                                      >  2:458480/1‑93 (MQ=255)
                    acgCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTcgcg                                                                     >  1:431155/1‑93 (MQ=255)
                      gCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAg                                                                   >  1:1098683/1‑93 (MQ=255)
                       cAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGt                                                                  >  2:440090/1‑93 (MQ=255)
                       cAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGt                                                                  <  2:2203782/93‑1 (MQ=255)
                        aGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGtt                                                                 >  1:3464814/1‑93 (MQ=255)
                        aGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGtt                                                                 >  2:4674844/1‑93 (MQ=255)
                         gAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTc                                                                >  1:3162210/1‑93 (MQ=255)
                         gAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTc                                                                >  1:205978/1‑93 (MQ=255)
                          aaaTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCg                                                               >  1:1030837/1‑93 (MQ=255)
                           aaTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGa                                                              >  1:2985037/1‑93 (MQ=255)
                             tGCGAAAATTACGAAATCAAAATTAAGTAGGACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGt                                                            >  1:2678969/1‑93 (MQ=18)
                             tGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGt                                                            >  2:5061184/1‑93 (MQ=255)
                              gCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtc                                                           >  2:622916/1‑93 (MQ=255)
                              gCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtc                                                           <  1:5815165/93‑1 (MQ=255)
                              gCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtc                                                           >  2:5762817/1‑93 (MQ=255)
                               cGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtct                                                          <  2:6147088/93‑1 (MQ=255)
                               cGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtct                                                          <  1:3062792/93‑1 (MQ=255)
                               cGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtct                                                          <  1:73095/93‑1 (MQ=255)
                               cGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGATCGGGGTCGCGAGTTCGAGtct                                                          <  2:141453/93‑1 (MQ=255)
                                gAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc                                                         >  2:1478503/1‑93 (MQ=255)
                                gAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc                                                         >  1:5235875/1‑93 (MQ=255)
                                gAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGCTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc                                                         >  1:6020341/1‑93 (MQ=255)
                                   aaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGtt                                                      >  1:4062483/1‑93 (MQ=255)
                                   aaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGtt                                                      >  2:5865315/1‑93 (MQ=255)
                                     ttACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTc                                                    >  1:148863/1‑93 (MQ=255)
                                       aCGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTccc                                                  <  1:3751550/93‑1 (MQ=255)
                                       aCGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTccc                                                  <  1:717063/93‑1 (MQ=255)
                                         gAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGc                                                >  1:6211726/1‑93 (MQ=255)
                                           aaGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTc                                              >  2:3220276/1‑93 (MQ=255)
                                            aGCAAAATTAAGTAGTACGCGGGAATAGCTCGGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTcc                                             <  2:2642674/93‑1 (MQ=255)
                                            aGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCTCGCTcc                                             >  1:622807/1‑93 (MQ=255)
                                            aGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTcc                                             >  2:2512323/1‑93 (MQ=255)
                                            aGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTcc                                             <  1:1505995/93‑1 (MQ=255)
                                            aGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTcc                                             <  1:3001065/93‑1 (MQ=255)
                                            aGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTcc                                             <  2:4281129/93‑1 (MQ=255)
                                            aGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTcc                                             >  2:1312807/1‑93 (MQ=255)
                                              cAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCaa                                           <  2:1088023/93‑1 (MQ=255)
                                              cAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCaa                                           <  2:938720/93‑1 (MQ=255)
                                                 aaTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAt                                        >  1:6396178/1‑93 (MQ=255)
                                                  aTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAtt                                       >  1:4977625/1‑93 (MQ=255)
                                                   ttAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAttt                                      >  1:1966018/1‑93 (MQ=255)
                                                        tagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaaaa                                 >  2:70653/1‑93 (MQ=255)
                                                        tagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaaaa                                 <  1:111758/93‑1 (MQ=255)
                                                         agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAg                                >  1:5888051/1‑93 (MQ=255)
                                                          gtaCGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt                               <  2:240600/93‑1 (MQ=255)
                                                          gtaCGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt                               <  1:874388/93‑1 (MQ=255)
                                                           taCGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtg                              >  1:1043213/1‑93 (MQ=255)
                                                            aCGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgc                             <  2:5257112/93‑1 (MQ=255)
                                                             cgcgGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTcc                                                   >  2:5810719/1‑70 (MQ=9)
                                                                 ggAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCaa                        >  2:4991051/1‑93 (MQ=255)
                                                                  gAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCaaa                       >  2:1074078/1‑93 (MQ=255)
                                                                   aaTAGCTCAGTTGTTAGAGCACGGCCGTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAg                      <  1:5199670/93‑1 (MQ=255)
                                                                   aaTAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGTTGCAAAg                      >  2:4002069/1‑93 (MQ=255)
                                                                    aTAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAga                     >  1:952939/1‑92 (MQ=255)
                                                                     tAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGCAAAGAACTGCaaatcc                    >  1:2399886/1‑90 (MQ=11)
                                                                     tAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGca                    <  1:6302179/93‑1 (MQ=255)
                                                                     tAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCCGCAAAGca                    >  2:2011932/1‑93 (MQ=255)
                                                                      aGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGcac                   <  1:1200884/93‑1 (MQ=255)
                                                                      aGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGcac                   >  2:5523672/1‑93 (MQ=255)
                                                                      aGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGcac                   <  1:2590538/93‑1 (MQ=255)
                                                                          cAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGac               >  2:325407/1‑93 (MQ=255)
                                                                           aGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGacc              <  2:4681378/93‑1 (MQ=255)
                                                                             ttGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGaccac            <  2:2539523/93‑1 (MQ=255)
                                                                               ggTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCAccc          >  2:1751150/1‑93 (MQ=255)
                                                                                 tAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCaa        <  2:3516817/93‑1 (MQ=255)
                                                                                  agagCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAg       <  2:3369015/93‑1 (MQ=255)
                                                                                  agagCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAg       <  2:2813541/93‑1 (MQ=255)
                                                                                    agCGCGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCg     <  2:2780280/93‑1 (MQ=255)
                                                                                    agCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCg     >  1:5649645/1‑93 (MQ=255)
                                                                                    agCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCg     >  2:5604780/1‑93 (MQ=255)
                                                                                    agCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCg     >  2:2832236/1‑93 (MQ=255)
                                                                                     gCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCgg    >  2:4198842/1‑93 (MQ=255)
                                                                                     gCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCgg    <  1:3828211/93‑1 (MQ=255)
                                                                                     gCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCgg    <  2:770830/93‑1 (MQ=255)
                                                                                          |                                                                                         
ATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGA  >  NC_000913/4389876‑4390055

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAG  >  NC_000913/4389873‑4390059
                                                                                             |                                                                                             
CGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGG                                                                                               >  SRR4302534.180108/1‑94 (MQ=60)
CGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGG                                                                                               >  SRR4302534.2577095/1‑94 (MQ=60)
CGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGG                                                                                               >  SRR4302534.3014013/1‑94 (MQ=60)
 GTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGC                                                                                              >  SRR4302534.6561833/1‑94 (MQ=60)
 GTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGC                                                                                              >  SRR4302534.2140038/1‑94 (MQ=60)
   ATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCT                                                                                            >  SRR4302534.4782859/1‑94 (MQ=60)
   ATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCT                                                                                            <  SRR4302534.3894891/94‑1 (MQ=60)
    TAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTT                                                                                           >  SRR4302534.1077821/1‑94 (MQ=60)
    TAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTT                                                                                           >  SRR4302534.5313777/1‑94 (MQ=60)
     AATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTG                                                                                          >  SRR4302534.1829656/1‑94 (MQ=60)
     AATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTG                                                                                          >  SRR4302534.1828696/1‑94 (MQ=60)
       TGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCC                                                                                        >  SRR4302534.1368096/1‑94 (MQ=60)
       TGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCC                                                                                        <  SRR4302534.4083442/94‑1 (MQ=60)
        GCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCA                                                                                       >  SRR4302534.3063547/1‑94 (MQ=60)
         CGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAA                                                                                      <  SRR4302534.4984708/94‑1 (MQ=60)
         CGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAA                                                                                      >  SRR4302534.174853/1‑94 (MQ=60)
         CGCCTCCCGTAACGACGCAGAAATGCGAAAACTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAA                                                                                      <  SRR4302534.2716257/94‑1 (MQ=60)
          TCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAG                                                                                     >  SRR4302534.4111918/1‑94 (MQ=60)
          GCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAG                                                                                     <  SRR4302534.1418398/94‑1 (MQ=60)
          GCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAG                                                                                     <  SRR4302534.3642109/94‑1 (MQ=60)
           CCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGG                                                                                    <  SRR4302534.6500086/94‑1 (MQ=60)
            CTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGT                                                                                   >  SRR4302534.2416761/1‑94 (MQ=60)
            CTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGT                                                                                   >  SRR4302534.2576211/1‑94 (MQ=60)
            CTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGT                                                                                   >  SRR4302534.3757716/1‑94 (MQ=60)
            CTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGT                                                                                   >  SRR4302534.1019981/1‑94 (MQ=60)
             TCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTC                                                                                  >  SRR4302534.1425883/1‑94 (MQ=60)
             TCCCGTAACAACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTC                                                                                  >  SRR4302534.6481573/1‑94 (MQ=60)
              CCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCG                                                                                 <  SRR4302534.2849471/94‑1 (MQ=60)
                CGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGG                                                                               <  SRR4302534.1949148/94‑1 (MQ=60)
                CGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGG                                                                               >  SRR4302534.4966661/1‑94 (MQ=60)
                CGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGG                                                                               >  SRR4302534.2436296/1‑94 (MQ=60)
                CGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGG                                                                               >  SRR4302534.557680/1‑94 (MQ=60)
                 GTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGG                                                                              >  SRR4302534.3191912/1‑94 (MQ=60)
                   AACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTC                                                                            >  SRR4302534.4710596/1‑94 (MQ=60)
                   AACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTC                                                                            >  SRR4302534.7429/1‑94 (MQ=60)
                   AACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTC                                                                            >  SRR4302534.637858/1‑94 (MQ=60)
                   AACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTC                                                                            <  SRR4302534.1386511/94‑1 (MQ=60)
                    ACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCG                                                                           <  SRR4302534.3099104/94‑1 (MQ=60)
                      GACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCG                                                                         >  SRR4302534.442155/1‑94 (MQ=60)
                       ACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGA                                                                        <  SRR4302534.1267862/94‑1 (MQ=60)
                       ACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGA                                                                        >  SRR4302534.6437574/1‑94 (MQ=60)
                       ACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGA                                                                        >  SRR4302534.166701/1‑94 (MQ=60)
                       ACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGA                                                                        <  SRR4302534.1963762/94‑1 (MQ=60)
                        CGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAG                                                                       >  SRR4302534.1127299/1‑94 (MQ=60)
                         GCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGT                                                                      >  SRR4302534.600273/1‑94 (MQ=60)
                          CAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTT                                                                     >  SRR4302534.3557956/1‑94 (MQ=60)
                           AGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTC                                                                    >  SRR4302534.211384/1‑94 (MQ=60)
                           AGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTC                                                                    >  SRR4302534.3245539/1‑94 (MQ=60)
                            GAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCG                                                                   >  SRR4302534.1057398/1‑94 (MQ=60)
                            GAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCG                                                                   >  SRR4302534.861393/1‑94 (MQ=60)
                            GAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCG                                                                   >  SRR4302534.5338280/1‑94 (MQ=60)
                             AAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGA                                                                  >  SRR4302534.5367428/1‑94 (MQ=60)
                             AAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGA                                                                  >  SRR4302534.3063111/1‑94 (MQ=60)
                               ATGCGAAAATTACGAAATCAAAATTAAGTAGGACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGT                                                                >  SRR4302534.2749788/1‑94 (MQ=55)
                                TGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTC                                                               <  SRR4302534.2062229/94‑1 (MQ=60)
                                 GCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCT                                                              <  SRR4302534.5972999/94‑1 (MQ=60)
                                  CGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTC                                                             <  SRR4302534.3143171/94‑1 (MQ=60)
                                  CGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTC                                                             >  SRR4302534.5377239/1‑94 (MQ=60)
                                  CGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTC                                                             <  SRR4302534.75087/94‑1 (MQ=60)
                                  CGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTC                                                             <  SRR4302534.4781582/94‑1 (MQ=60)
                                  CGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGCTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTC                                                             >  SRR4302534.6183947/1‑94 (MQ=60)
                                   GAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCT                                                            >  SRR4302534.2381414/1‑94 (MQ=60)
                                   GAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCG                                                            >  SRR4302534.5056212/1‑94 (MQ=60)
                                   GAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCG                                                            >  SRR4302534.3398425/1‑94 (MQ=60)
                                   GAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCG                                                            <  SRR4302534.6537145/94‑1 (MQ=60)
                                    AAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGT                                                           >  SRR4302534.3756392/1‑94 (MQ=60)
                                     AAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTT                                                          >  SRR4302534.6599213/1‑94 (MQ=60)
                                     AAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTT                                                          >  SRR4302534.4171471/1‑94 (MQ=60)
                                     AAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTT                                                          <  SRR4302534.5267236/94‑1 (MQ=60)
                                      AATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTT                                                         >  SRR4302534.3341340/1‑94 (MQ=60)
                                       ATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTC                                                        >  SRR4302534.152739/1‑94 (MQ=60)
                                         TACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTTCC                                                      >  SRR4302534.5589513/1‑94 (MQ=59)
                                         TACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCC                                                      <  SRR4302534.1138616/94‑1 (MQ=60)
                                         TACGAAAGCAAAAGTAAGTAGTACGCGGTAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCC                                                      <  SRR4302534.4510731/94‑1 (MQ=44)
                                          ACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCG                                                     <  SRR4302534.734736/94‑1 (MQ=58)
                                          ACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCG                                                     <  SRR4302534.1313526/94‑1 (MQ=58)
                                          ACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCG                                                     <  SRR4302534.3852298/94‑1 (MQ=58)
                                           CGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGC                                                    >  SRR4302534.6380537/1‑94 (MQ=55)
                                            GAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCT                                                   >  SRR4302534.4265734/1‑94 (MQ=53)
                                              AAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCTCGCTCC                                                 >  SRR4302534.637922/1‑94 (MQ=46)
                                               AGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCA                                                <  SRR4302534.3079563/94‑1 (MQ=45)
                                               AGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCA                                                <  SRR4302534.1545611/94‑1 (MQ=45)
                                               AGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCA                                                >  SRR4302534.695694/1‑94 (MQ=45)
                                               AGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCA                                                <  SRR4302534.1172097/94‑1 (MQ=45)
                                                   AAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT                                            >  SRR4302534.6568911/1‑94 (MQ=35)
                                                    AATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATT                                           >  SRR4302534.5112362/1‑94 (MQ=33)
                                                    AATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATT                                           >  SRR4302534.285756/1‑94 (MQ=33)
                                                     ATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTT                                          <  SRR4302534.1771261/94‑1 (MQ=30)
                                                     ATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTT                                          >  SRR4302534.2017481/1‑94 (MQ=30)
                                                      TTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTG                                         >  SRR4302534.294095/1‑94 (MQ=28)
                                                      TTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTG                                         <  SRR4302534.5852843/94‑1 (MQ=28)
                                                        AAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAA                                       >  SRR4302534.1928382/1‑94 (MQ=23)
                                                         AGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAA                                      >  SRR4302534.356855/1‑94 (MQ=20)
                                                           TAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAG                                    <  SRR4302534.114743/94‑1 (MQ=20)
                                                           TAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAG                                    <  SRR4302534.2253808/94‑1 (MQ=20)
                                                           TAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAG                                    >  SRR4302534.6047920/1‑94 (MQ=20)
                                                            AGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAtatag                                   >  SRR4302534.5467721/1‑89 (MQ=10)
                                                            AGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGG                                   >  SRR4302534.3915331/1‑94 (MQ=14)
                                                             GTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTG                                  <  SRR4302534.896500/94‑1 (MQ=20)
                                                             GTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTG                                  >  SRR4302534.1070151/1‑94 (MQ=20)
                                                              TACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGC                                 <  SRR4302534.4978888/94‑1 (MQ=20)
                                                              TACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGC                                 >  SRR4302534.3813125/1‑94 (MQ=20)
                                                               ACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCG                                >  SRR4302534.2848816/1‑94 (MQ=14)
                                                                CGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTG                               <  SRR4302534.154454/94‑1 (MQ=20)
                                                                CGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTG                               <  SRR4302534.6055775/94‑1 (MQ=20)
                                                                 GCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCCAAATTTGAAAAatgttgg                              >  SRR4302534.6176767/1‑87 (MQ=0)
                                                                 GCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGC                              >  SRR4302534.781579/1‑94 (MQ=20)
                                                                 GCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGGTCGAGTCTCGTTTCCCGCCCCAAAATTTGAAAAGTGGTGC                              >  SRR4302534.5568475/1‑94 (MQ=6)
                                                                  CGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCA                             >  SRR4302534.4054978/1‑94 (MQ=23)
                                                                   GGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAA                            >  SRR4302534.745324/1‑94 (MQ=25)
                                                                   GGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAA                            >  SRR4302534.3648192/1‑94 (MQ=25)
                                                                     GAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG                          <  SRR4302534.6215148/94‑1 (MQ=30)
                                                                      AATAGCTCAGTTGTTAGAGCACGGCCGTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC                         <  SRR4302534.5339931/94‑1 (MQ=30)
                                                                      AATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGA                         >  SRR4302534.977203/1‑94 (MQ=30)
                                                                      AATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAACTGCTGCAAAGA                         >  SRR4302534.4866172/1‑94 (MQ=14)
                                                                       ATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAActactgcaaatcc                        >  SRR4302534.882296/1‑81 (MQ=0)
                                                                       ATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCA                        >  SRR4302534.2781209/1‑94 (MQ=35)
                                                                        TAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCAC                       <  SRR4302534.6472604/94‑1 (MQ=38)
                                                                         AGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACA                      <  SRR4302534.1232482/94‑1 (MQ=40)
                                                                         AGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACA                      <  SRR4302534.2659116/94‑1 (MQ=40)
                                                                          GCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAG                     <  SRR4302534.900166/94‑1 (MQ=43)
                                                                           CTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTTAAAAGTGCTGCAAAGCACAGA                    >  SRR4302534.3321456/1‑94 (MQ=41)
                                                                            TCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAATGTGCTGCAAAGCACAGAC                   >  SRR4302534.1100296/1‑94 (MQ=31)
                                                                             CAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACC                  <  SRR4302534.6206534/94‑1 (MQ=45)
                                                                             CAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGAACAGACA                  >  SRR4302534.3642516/1‑94 (MQ=33)
                                                                                     AGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTTAAAAGTGCTGAAAAGCACAAACCACCCAAGC          >  SRR4302534.3535862/1‑94 (MQ=29)
                                                                                     AGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGC          >  SRR4302534.546051/1‑94 (MQ=45)
                                                                                      GAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCCAAATTTGAAAAATGCTGCAAAACACAGAACACCCAAGCG         >  SRR4302534.1200064/1‑94 (MQ=30)
                                                                                      GAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCG         >  SRR4302534.5802576/1‑94 (MQ=45)
                                                                                        GCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGG       <  SRR4302534.3931040/94‑1 (MQ=45)
                                                                                         CACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGA      >  SRR4302534.1060841/1‑94 (MQ=45)
                                                                                           CGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTttaaagcgttgcaaagtcaaaaccacccaaacgggaat    >  SRR4302534.2330006/1‑56 (MQ=0)
                                                                                           CGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAAT    <  SRR4302534.1602960/94‑1 (MQ=46)
                                                                                           CGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAAT    >  SRR4302534.8100/1‑94 (MQ=46)
                                                                                            GGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATA   >  SRR4302534.490756/1‑94 (MQ=46)
                                                                                            GGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATA   <  SRR4302534.397454/94‑1 (MQ=46)
                                                                                             GCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAG  <  SRR4302534.1906831/94‑1 (MQ=47)
                                                                                             |                                                                                             
CGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAG  >  NC_000913/4389873‑4390059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑