Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,392,651 |
(G)5→4 |
coding (1008/1548 nt) |
yjeF → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,392,647 | 0 | G | . | 93.6%
| 830.3
/ 42.3
| 203 | coding (1004/1548 nt) | yjeF | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (8/5); new base . (94/96); total (102/101) |
| Fisher's exact test for biased strand distribution p-value = 5.68e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.70e-01 |
Only 100 of 218 total aligned reads displayed.
GATGGTGCATGAACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGTGGGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAATCCC > NC_000913/4392555‑4392735
|
gATGGTGCATGAACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGTg < 2:2838551/93‑1 (MQ=255)
gATGGTGCATGAACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGTg < 1:5006253/93‑1 (MQ=255)
aTGGTGCATGAACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGTgg > 2:3071679/1‑93 (MQ=255)
aTGGTGCATGAACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGTgg < 1:3000966/93‑1 (MQ=255)
tGGTGCATGAACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGTggg < 1:5716886/93‑1 (MQ=255)
tGGTGCATGAACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGTggg < 1:6164189/93‑1 (MQ=255)
ggTGCATGAACTGACGATGGACTCTCTTACCGAAAGCCGGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGTgggg < 2:3165980/93‑1 (MQ=255)
gTGCATGAACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGTgggga < 2:3669185/93‑2 (MQ=255)
gCATGAACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGTGGGGaaa < 2:5908533/93‑1 (MQ=255)
gCATGAACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGTGGGGaaa > 1:3769880/1‑93 (MQ=255)
cgtGAACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGTGGGGaaaa > 2:6247353/3‑93 (MQ=255)
cATGAACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGTGGGGaaaa < 1:1946417/93‑1 (MQ=255)
tGAACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGTGGGGaaaaaa < 1:5090451/93‑1 (MQ=255)
tGAACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGTGGGGaaaaaa < 2:2239240/93‑1 (MQ=255)
gAACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGTGGGGaaaaaag > 1:4051218/1‑92 (MQ=255)
aaCTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGc < 1:10048/93‑1 (MQ=255)
aaCTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGc < 1:1286922/93‑1 (MQ=255)
aCTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGATGATTGGTCCCGGTCTGGGCCAGAAAGAGT‑GGGGAAAAAAGCa < 1:6302432/93‑1 (MQ=255)
cTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCAc < 1:4508847/93‑1 (MQ=255)
cTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCAc > 1:2875045/1‑93 (MQ=255)
tGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACt > 2:2549372/1‑93 (MQ=255)
aCGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGc > 2:5573798/1‑93 (MQ=255)
cGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCa < 2:5041187/93‑1 (MQ=255)
gATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCaa > 2:5787002/1‑93 (MQ=255)
aTGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCaaa > 2:4436523/1‑93 (MQ=255)
tGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCaaaa > 2:4665811/1‑93 (MQ=255)
tGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCaaaa > 1:6404266/1‑93 (MQ=255)
tGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCaaaa < 2:1058065/93‑1 (MQ=255)
tGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCaaaa < 2:3252880/93‑1 (MQ=255)
ggACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCaaaaa < 2:1910882/93‑1 (MQ=255)
ggACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCaaaaa > 1:1275480/1‑93 (MQ=255)
gACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAg < 2:1330597/93‑1 (MQ=255)
ctctctTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGtt < 1:5288780/93‑1 (MQ=255)
ctctctTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGtt > 1:2253037/1‑93 (MQ=255)
tctctTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTg > 2:3513136/1‑93 (MQ=255)
tctctTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTg > 1:3502963/1‑93 (MQ=255)
ctctTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTga < 2:1449254/93‑1 (MQ=255)
ctctTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTga > 2:5737873/1‑93 (MQ=255)
tctTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGACCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTgag > 2:4531930/1‑93 (MQ=255)
tACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAAt < 1:5484978/93‑1 (MQ=255)
tACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAAt > 2:1839000/1‑93 (MQ=255)
aCCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAAtt > 2:5292965/1‑93 (MQ=255)
aCCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAAtt < 2:1623787/93‑1 (MQ=255)
aCCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAAtt > 2:806953/1‑93 (MQ=255)
aCCGAAAGCCTGGAAGGGGCCGATGTCGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAAtt < 1:2529550/93‑1 (MQ=255)
ccGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAAttt > 1:2838960/1‑93 (MQ=255)
aaGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGc > 2:320957/1‑93 (MQ=255)
aGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCa > 1:2068693/1‑93 (MQ=255)
gCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCaa < 2:403368/93‑1 (MQ=255)
tGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAAcc > 1:316498/1‑93 (MQ=255)
tGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAAcc > 1:1435522/1‑93 (MQ=255)
ggAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCg > 1:6089986/1‑93 (MQ=255)
gAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGa < 2:1156931/93‑1 (MQ=255)
gAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGa < 1:3852003/93‑1 (MQ=255)
gAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGa > 1:5822869/1‑93 (MQ=255)
gAATGGGCCGATGTGGTGGTGATTGGTCCCGATCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGa < 2:5234891/93‑1 (MQ=255)
aaTGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGAt > 1:5756331/1‑93 (MQ=255)
aTGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGAtg > 2:939375/1‑93 (MQ=255)
aTGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGAtg > 1:4496085/1‑93 (MQ=255)
aTGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGAtg > 2:2048727/1‑93 (MQ=255)
ggCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTGTCGCAAACCGAtgttg < 1:1564914/93‑1 (MQ=255)
gCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGAtgttgt > 2:5944923/1‑93 (MQ=255)
ccGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTtgtg > 1:5180086/1‑93 (MQ=255)
cGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGAAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTgg < 2:391606/93‑1 (MQ=255)
gATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTggg > 2:889974/1‑93 (MQ=255)
gATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTggg < 1:164264/93‑1 (MQ=255)
aTGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGa > 1:4815070/1‑93 (MQ=255)
aTGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGa < 1:4682994/93‑1 (MQ=255)
tgtgGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGAt > 1:5349241/1‑93 (MQ=255)
tgtgGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGAt < 2:4796573/93‑1 (MQ=255)
tgtgGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGAt > 1:3980605/1‑93 (MQ=255)
tggtggtgATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGc < 1:3388059/93‑1 (MQ=255)
gtggtgATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCg > 1:24243/1‑93 (MQ=255)
tggtgATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGa < 1:5910557/93‑1 (MQ=255)
ggtgATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGAt < 2:495012/93‑1 (MQ=255)
gtgATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATg < 1:3453868/93‑1 (MQ=255)
tGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTg < 1:4715621/93‑1 (MQ=255)
tGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTg < 2:4734232/93‑1 (MQ=255)
ggTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGa < 2:2386537/93‑1 (MQ=255)
ggTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGa < 2:3410012/93‑1 (MQ=255)
gTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGaa > 1:1722805/1‑93 (MQ=255)
tCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAAc > 1:4566450/1‑93 (MQ=255)
cccGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAAcc < 2:3706643/93‑1 (MQ=255)
ccGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACct > 1:2341363/1‑93 (MQ=255)
ggTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACctgc < 2:6111351/93‑1 (MQ=255)
ggTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACctgc < 2:1347081/93‑1 (MQ=255)
gTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACctgct > 2:1283132/1‑93 (MQ=255)
gTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACctgct > 2:1851336/1‑93 (MQ=255)
gTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACctgct > 2:6256670/1‑93 (MQ=255)
tGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGc < 2:5425414/93‑1 (MQ=255)
gggCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGca > 2:4087432/1‑93 (MQ=255)
gggCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGca > 2:1071829/1‑93 (MQ=255)
ggCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGcaa < 1:4347081/93‑1 (MQ=255)
ggCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGcaa < 2:3127537/93‑1 (MQ=255)
ccAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGcaatc < 1:3907425/93‑1 (MQ=255)
aGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGcaatcaa < 2:1730018/93‑1 (MQ=255)
aGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGcaatcaa > 1:3612430/1‑93 (MQ=255)
aaGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAATcc > 1:637862/1‑93 (MQ=255)
agagT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGACCCTGCTGGCAATCAATccc < 2:2248432/93‑1 (MQ=255)
agagT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAATccc > 2:1266532/1‑93 (MQ=255)
|
GATGGTGCATGAACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGTGGGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAATCCC > NC_000913/4392555‑4392735
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGTGCATGAACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGTGGGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAATCCCGATAAGCGT > NC_000913/4392558‑4392744
|
GGTGCATGAACTGACGATGGACTCTCTTACCGAAAGCCGGGAATGGGCCGATTTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGTGGGGA < SRR4302534.1505318/94‑1 (MQ=60)
GTGCATGAACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGTGGGGAA > SRR4302534.1751171/1‑94 (MQ=60)
TGCATGAACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGTGGGGAAA > SRR4302534.3871113/1‑94 (MQ=60)
CATGAACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGTGGGGAAAAA > SRR4302534.3583815/1‑94 (MQ=60)
CATGAACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGTGGGGAAAAA < SRR4302534.1997361/94‑1 (MQ=60)
ATGAACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGTGGGGAAAAAA < SRR4302534.4672090/94‑1 (MQ=60)
TGAACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAG < SRR4302534.5227853/94‑1 (MQ=60)
TGAACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAG > SRR4302534.4159870/1‑94 (MQ=60)
GAACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGTGGGGAAAAAAga > SRR4302534.3329819/1‑92 (MQ=60)
AACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCA < SRR4302534.1320815/94‑1 (MQ=60)
AACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCA > SRR4302534.6357605/1‑94 (MQ=60)
AACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCA < SRR4302534.10306/94‑1 (MQ=60)
ACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCAC > SRR4302534.2950534/1‑94 (MQ=60)
ACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGATGATTGGTCCCGGTCTGGGCCAGAAAGAGT‑GGGGAAAAAAGCAC < SRR4302534.6472868/94‑1 (MQ=60)
CTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACT < SRR4302534.5162238/94‑1 (MQ=60)
CTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACT < SRR4302534.6326814/94‑1 (MQ=60)
CTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACT < SRR4302534.4630949/94‑1 (MQ=60)
TGACGATGGCCTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTG > SRR4302534.6484918/1‑94 (MQ=60)
ATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAA > SRR4302534.4845375/1‑94 (MQ=60)
ATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAA > SRR4302534.6577156/1‑94 (MQ=60)
tgtatTCTCTTACCGATAGCTTGGAAGGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCGCTGCAAAAA < SRR4302534.6017835/89‑1 (MQ=60)
TGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAA > SRR4302534.1309053/1‑94 (MQ=60)
GGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAG < SRR4302534.1659107/94‑1 (MQ=60)
ACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTT < SRR4302534.4620474/94‑1 (MQ=60)
ACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTT > SRR4302534.2312760/1‑94 (MQ=60)
CTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTG < SRR4302534.5431544/94‑1 (MQ=60)
CTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTG > SRR4302534.3597193/1‑94 (MQ=60)
gagttgacagagAGCCTGGAATGGCCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGA < SRR4302534.3783199/82‑1 (MQ=60)
CTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAG > SRR4302534.1850165/1‑94 (MQ=60)
TACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATT > SRR4302534.4708541/1‑94 (MQ=60)
TACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATT < SRR4302534.5632907/94‑1 (MQ=60)
ACCGAATGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTT < SRR4302534.4834271/94‑1 (MQ=60)
ACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTT > SRR4302534.2913551/1‑94 (MQ=60)
ACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTT < SRR4302534.4079461/94‑1 (MQ=60)
ACCGAAAGCCTGGAAGGGGCCGATGTCGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTT < SRR4302534.2596666/94‑1 (MQ=60)
CGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTC > SRR4302534.5519655/1‑94 (MQ=60)
AAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCA > SRR4302534.6216305/1‑94 (MQ=60)
AAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCA > SRR4302534.2122798/1‑94 (MQ=60)
GCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAA > SRR4302534.909392/1‑94 (MQ=60)
CCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAAC > SRR4302534.1699782/1‑94 (MQ=60)
CTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACC < SRR4302534.2065095/94‑1 (MQ=60)
CTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACC > SRR4302534.324650/1‑94 (MQ=60)
CTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACC > SRR4302534.1473295/1‑94 (MQ=60)
TGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCG > SRR4302534.6255602/1‑94 (MQ=60)
GGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGA > SRR4302534.5980917/1‑94 (MQ=60)
GAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGAT < SRR4302534.3955436/94‑1 (MQ=60)
GAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGAT > SRR4302534.5912463/1‑94 (MQ=60)
GAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGAT < SRR4302534.3999026/94‑1 (MQ=60)
GAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGAT < SRR4302534.2532271/94‑1 (MQ=60)
GAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGAT > SRR4302534.2936080/1‑94 (MQ=60)
AATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATG < SRR4302534.2338213/94‑1 (MQ=60)
AATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATG > SRR4302534.3622027/1‑94 (MQ=60)
AATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATG > SRR4302534.4617766/1‑94 (MQ=60)
GGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTGTCGCAAACCGATGTTGT < SRR4302534.1605869/94‑1 (MQ=60)
GCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTG > SRR4302534.5319675/1‑94 (MQ=60)
CGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGG > SRR4302534.4098907/1‑94 (MQ=60)
GATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGA > SRR4302534.4945777/1‑94 (MQ=60)
GATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGA < SRR4302534.168568/94‑1 (MQ=60)
GATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGA < SRR4302534.2457597/94‑1 (MQ=60)
ATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGAT < SRR4302534.4810137/94‑1 (MQ=60)
ATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGAT > SRR4302534.5493469/1‑94 (MQ=60)
ATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGAT < SRR4302534.3032826/94‑1 (MQ=60)
ATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGAT > SRR4302534.4087123/1‑94 (MQ=60)
TGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCC < SRR4302534.3478927/94‑1 (MQ=60)
GGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCG > SRR4302534.24880/1‑94 (MQ=60)
TGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGAT < SRR4302534.6071056/94‑1 (MQ=60)
GTGATTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGC < SRR4302534.3546708/94‑1 (MQ=60)
TTGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTG < SRR4302534.5971905/94‑1 (MQ=60)
TGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGA < SRR4302534.5636021/94‑1 (MQ=60)
TGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGA > SRR4302534.5262277/1‑94 (MQ=60)
TGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGA < SRR4302534.4843673/94‑1 (MQ=60)
TGGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGA < SRR4302534.1313048/94‑1 (MQ=60)
GGTCCCGGTCTGGGCCAGCGAGAGT‑AGGGAAAAAAGCACTGCAAAAAGTTGAGACTTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAA < SRR4302534.3951210/94‑1 (MQ=60)
GGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGTAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAA > SRR4302534.5386474/1‑94 (MQ=60)
GGTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAA > SRR4302534.1767561/1‑94 (MQ=60)
GTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAAC > SRR4302534.5191580/1‑94 (MQ=60)
GTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAAC > SRR4302534.4627797/1‑94 (MQ=60)
GTCCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAAC > SRR4302534.4690244/1‑94 (MQ=60)
CCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCT > SRR4302534.2403502/1‑94 (MQ=60)
CCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCT < SRR4302534.65625/94‑1 (MQ=60)
CCCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCT < SRR4302534.457651/94‑1 (MQ=60)
CCGGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTG < SRR4302534.1287369/94‑1 (MQ=60)
GGTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCT > SRR4302534.257112/1‑94 (MQ=60)
GTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTG > SRR4302534.3304030/1‑94 (MQ=60)
GTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTG > SRR4302534.6342420/1‑94 (MQ=60)
GTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTG > SRR4302534.5820950/1‑94 (MQ=60)
GTCTGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTG < SRR4302534.2861328/94‑1 (MQ=60)
TGGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCA > SRR4302534.398262/1‑94 (MQ=60)
GGGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAA > SRR4302534.598275/1‑94 (MQ=60)
GGCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAAT < SRR4302534.4464462/94‑1 (MQ=60)
GCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAGCCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATC < SRR4302534.2809111/94‑1 (MQ=60)
GCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATC < SRR4302534.3515077/94‑1 (MQ=60)
GCCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATC < SRR4302534.2253917/94‑1 (MQ=60)
CCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCA < SRR4302534.4012215/94‑1 (MQ=60)
CCAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCA < SRR4302534.4216427/94‑1 (MQ=60)
CAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAA > SRR4302534.1392013/1‑94 (MQ=60)
CAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAA > SRR4302534.3709569/1‑94 (MQ=60)
CAGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAA > SRR4302534.3884192/1‑94 (MQ=60)
AGCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAAT > SRR4302534.5885127/1‑94 (MQ=60)
GCAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAATC < SRR4302534.5042382/94‑1 (MQ=60)
CAAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAATCC > SRR4302534.653344/1‑94 (MQ=60)
AAGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAATCCC < SRR4302534.5459891/94‑1 (MQ=60)
AGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAATCCCG > SRR4302534.5481900/1‑94 (MQ=60)
AGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAATCCCG < SRR4302534.3803933/94‑1 (MQ=60)
AGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAATCCCG > SRR4302534.6590930/1‑94 (MQ=60)
AGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAATCCCG > SRR4302534.2756304/1‑94 (MQ=60)
AGAGT‑GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAATCCCG > SRR4302534.2421112/1‑94 (MQ=60)
TGGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAATCCCGATAA > SRR4302534.3173179/1‑94 (MQ=60)
GGGGAAAAAAGCGCTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAATCCCGATAAG < SRR4302534.5303764/94‑1 (MQ=60)
GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAATCCCGATAAG < SRR4302534.2781108/94‑1 (MQ=60)
GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAATCCCGATAAG < SRR4302534.1641850/94‑1 (MQ=60)
GGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAATCCCGATAAG < SRR4302534.2099188/94‑1 (MQ=60)
GGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAATCCCGATAAGC > SRR4302534.4964267/1‑94 (MQ=60)
GGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAATCCCGATAAGCG > SRR4302534.1320985/1‑94 (MQ=60)
GGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAATCCCGATAAGCG > SRR4302534.2717042/1‑94 (MQ=60)
GGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAATCCCGATAAGCG > SRR4302534.6309985/1‑94 (MQ=60)
GGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAATCCCGATAAGCG > SRR4302534.727690/1‑94 (MQ=60)
GAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAATCCCGATAAGCGT < SRR4302534.1698616/94‑1 (MQ=60)
GAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAATCCCGATAAGCGT > SRR4302534.5559264/1‑94 (MQ=60)
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GGTGCATGAACTGACGATGGACTCTCTTACCGAAAGCCTGGAATGGGCCGATGTGGTGGTGATTGGTCCCGGTCTGGGCCAGCAAGAGTGGGGGAAAAAAGCACTGCAAAAAGTTGAGAATTTTCGCAAACCGATGTTGTGGGATGCCGATGCATTGAACCTGCTGGCAATCAATCCCGATAAGCGT > NC_000913/4392558‑4392744
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
