Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,467,145	A→G	L649L (TTA→TTG)	mgtA →	Mg2+ transport ATPase, P‑type 1

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,467,145	0	A	G	100.0%	763.7 / NA	218	L649L (TTA→TTG)	mgtA	Mg2+ transport ATPase, P‑type 1
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (112/106); total (112/106)

Only 100 of 229 total aligned reads displayed.

ATGCATAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTACGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAGCCTGA  >  NC_000913/4467056‑4467233

aTGCATAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTgcgc                                                                                       <  1:2226848/93‑1 (MQ=255)

aTGCATAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTgcgc                                                                                       >  1:3455424/1‑93 (MQ=255)

  gCATAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTgcgcgc                                                                                     >  2:4658076/1‑93 (MQ=255)

   cATAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCt                                                                                    >  2:6366201/1‑93 (MQ=255)

    aTAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTg                                                                                   >  2:1206241/1‑93 (MQ=255)

    aTAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTg                                                                                   <  1:3116686/93‑1 (MQ=255)

     tAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGc                                                                                  <  1:1203466/93‑1 (MQ=255)

     tAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGc                                                                                  <  1:884361/93‑1 (MQ=255)

     tAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGc                                                                                  <  1:4062739/93‑1 (MQ=255)

     tAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGc                                                                                  <  2:2883201/93‑1 (MQ=255)

        aGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGa                                                                               >  2:5338266/1‑93 (MQ=255)

        aGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGa                                                                               >  2:4693010/1‑93 (MQ=255)

          aaCGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGata                                                                             <  1:2266078/93‑1 (MQ=255)

           aCGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGatat                                                                            >  2:5014928/1‑93 (MQ=255)

           aCGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGatat                                                                            <  1:472832/93‑1 (MQ=255)

           aCGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGatat                                                                            >  1:5964226/1‑93 (MQ=255)

            cGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATc                                                                           <  1:3317798/93‑1 (MQ=255)

             gCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCg                                                                          >  1:2693121/1‑93 (MQ=255)

              cATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCgg                                                                         >  2:2716915/1‑93 (MQ=255)

               aTTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGc                                                                        <  2:2389069/93‑1 (MQ=255)

                 tgtgACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCAt                                                                      <  2:19463/93‑1 (MQ=255)

                  gtgACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCAtt                                                                     <  1:3540008/93‑1 (MQ=255)

                  gtgACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCAtt                                                                     <  2:6171604/93‑1 (MQ=255)

                  gtgACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCAtt                                                                     >  2:5253874/1‑93 (MQ=255)

                   tgACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCAttt                                                                    <  2:5436011/93‑1 (MQ=255)

                    gACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTc                                                                   <  2:1104817/93‑1 (MQ=255)

                    gACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTc                                                                   <  2:5605417/93‑1 (MQ=255)

                    gACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTc                                                                   >  2:2670171/1‑93 (MQ=255)

                     aCCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCt                                                                  >  2:456164/1‑93 (MQ=255)

                     aCCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCt                                                                  >  2:2455906/1‑93 (MQ=255)

                       cTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCtgt                                                                <  1:2125839/93‑1 (MQ=255)

                       cTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCtgt                                                                <  1:1634980/93‑1 (MQ=255)

                       cTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCtgt                                                                >  2:1390620/1‑93 (MQ=255)

                          aCTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGa                                                             >  1:1593920/1‑93 (MQ=255)

                           cTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGAc                                                            <  2:788809/93‑1 (MQ=255)

                            tGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACg                                                           <  2:5146491/93‑1 (MQ=255)

                            tGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACg                                                           >  2:5191391/1‑93 (MQ=255)

                            tGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACg                                                           <  1:5588693/93‑1 (MQ=255)

                             gAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACgg                                                          >  1:5321431/1‑93 (MQ=255)

                              aaGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGgc                                                         >  2:164795/1‑93 (MQ=255)

                               aGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGgcg                                                        <  1:2444404/93‑1 (MQ=255)

                               aGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGgcg                                                        >  1:5755537/1‑93 (MQ=255)

                               aGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGgcg                                                        >  2:3673187/1‑93 (MQ=255)

                               aGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGgcg                                                        <  2:5321227/93‑1 (MQ=255)

                                gcgcGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGgcgc                                                       <  1:2574214/93‑1 (MQ=255)

                                  gcgAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCgg                                                     >  1:6335708/1‑93 (MQ=255)

                                  gcgAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCgg                                                     <  1:520737/93‑1 (MQ=255)

                                   cgAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGt                                                    <  2:3352897/93‑1 (MQ=255)

                                      aGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGa                                                 >  1:6467616/1‑93 (MQ=255)

                                      aGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGa                                                 >  1:5864922/1‑93 (MQ=255)

                                      aGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGa                                                 >  2:5867972/1‑93 (MQ=255)

                                       gggCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGat                                                <  1:1783204/93‑1 (MQ=255)

                                       gggCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGat                                                <  2:1564925/93‑1 (MQ=255)

                                       gggCATGTGGGTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGat                                                <  1:205407/93‑1 (MQ=255)

                                        ggCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGata                                               >  1:1108320/1‑93 (MQ=255)

                                        ggCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGata                                               <  1:3581756/93‑1 (MQ=255)

                                          cATGTGGTTGTCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATAtt                                             <  1:3625982/93‑1 (MQ=255)

                                          cATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATAtt                                             <  2:1844559/93‑1 (MQ=255)

                                            tgtgGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGc                                           >  1:4681824/1‑93 (MQ=255)

                                             gtgGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGcc                                          <  2:3738762/93‑1 (MQ=255)

                                              tgGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGccc                                         >  1:4932863/1‑93 (MQ=255)

                                               ggTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCg                                        <  2:2219287/93‑1 (MQ=255)

                                               ggTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCg                                        >  1:3813172/1‑93 (MQ=255)

                                                  tGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGa                                     <  2:3228722/93‑1 (MQ=255)

                                                    gCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAg                                   >  1:4535534/1‑93 (MQ=255)

                                                     cTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGc                                  <  2:3334761/93‑1 (MQ=255)

                                                        tATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGc                               <  2:1352482/93‑1 (MQ=255)

                                                        tATGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGc                               <  1:2832116/93‑1 (MQ=255)

                                                          tGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTg                             >  1:3784213/1‑93 (MQ=255)

                                                          tGGGCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTg                             <  2:3906629/93‑1 (MQ=255)

                                                           gggCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGa                            >  2:1678036/1‑93 (MQ=255)

                                                           gggCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGa                            <  1:5443559/93‑1 (MQ=255)

                                                            ggCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGat                           <  2:5956961/93‑1 (MQ=255)

                                                            ggCGATGGTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGat                           <  2:3789848/93‑1 (MQ=255)

                                                                   gTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATcc                    <  1:3427606/93‑1 (MQ=255)

                                                                   gTATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATcc                    <  1:2967959/93‑1 (MQ=255)

                                                                    tATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCct                   >  1:5541103/1‑93 (MQ=255)

                                                                    tATTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCct                   <  2:2896075/93‑1 (MQ=255)

                                                                     aTTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCctg                  >  2:1275461/1‑93 (MQ=255)

                                                                     aTTAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCctg                  >  1:6236874/1‑93 (MQ=255)

                                                                      ttAATGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCctgc                 <  1:1991031/93‑1 (MQ=255)

                                                                        aaTGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCctgctg               >  2:302205/1‑93 (MQ=255)

                                                                        aaTGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCctgctg               >  2:6124114/1‑93 (MQ=255)

                                                                        aaTGATGCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCctgctg               <  2:5812379/93‑1 (MQ=255)

                                                                           gatgCTCCCGCCTTGCGCACTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGaa            >  1:1015993/1‑93 (MQ=255)

                                                                            atgCGCCCGCCTTGCGCTCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTTATATCATCCTGCTGGaaa           <  2:2734203/93‑1 (MQ=255)

                                                                            atgCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGaaa           >  2:4431195/1‑93 (MQ=255)

                                                                              gcgcCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGaaaaa         >  1:1079294/1‑93 (MQ=255)

                                                                               cgcccgccTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGaaaaaa        <  2:6129484/93‑1 (MQ=255)

                                                                                gcccgccTTGCGCGGTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAg       <  1:400453/93‑1 (MQ=255)

                                                                                gcccgccTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAg       >  2:518505/1‑93 (MQ=255)

                                                                                 cccgccTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAGc      <  2:2560690/93‑1 (MQ=255)

                                                                                 cccgccTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAGc      >  1:3156622/1‑93 (MQ=255)

                                                                                 cccgccTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAGc      >  2:894894/1‑93 (MQ=255)

                                                                                  ccgccTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCTGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAGcc     <  2:2430502/93‑1 (MQ=255)

                                                                                  ccgccTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAGcc     <  2:4314231/93‑1 (MQ=255)

                                                                                  ccgccTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAGcc     >  2:4154444/1‑93 (MQ=255)

                                                                                  ccgccTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAGcc     <  1:4433140/93‑1 (MQ=255)

                                                                                   cgccTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAGCCt    <  2:2078688/93‑1 (MQ=255)

                                                                                   cgccTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAGCCt    <  1:1454278/93‑1 (MQ=255)

ATGCATAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATGCGCCCGCCTTACGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAGCCTGA  >  NC_000913/4467056‑4467233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCCGATGCATAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTACGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAGCCTGATGGT  >  NC_000913/4467052‑4467237

GCCGATGCATAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTG                                                                                              >  SRR4302534.1111916/1‑94 (MQ=60)

GCCGATGCATAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTG                                                                                              <  SRR4302534.3420775/94‑1 (MQ=60)

GCCGATGCATAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTG                                                                                              >  SRR4302534.4714420/1‑94 (MQ=60)

 CCGATGCATAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGC                                                                                             <  SRR4302534.803932/94‑1 (MQ=60)

 CCGATGCATAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGC                                                                                             <  SRR4302534.4268773/94‑1 (MQ=60)

   GATGCATAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGC                                                                                           >  SRR4302534.3548304/1‑94 (MQ=60)

    ATGCATAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCG                                                                                          <  SRR4302534.4038386/94‑1 (MQ=60)

    ATGCATAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCG                                                                                          >  SRR4302534.1169273/1‑94 (MQ=60)

    ATGCATAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCG                                                                                          <  SRR4302534.2285835/94‑1 (MQ=60)

    ATGCATAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCG                                                                                          <  SRR4302534.504983/94‑1 (MQ=60)

     TGCATAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGC                                                                                         >  SRR4302534.591609/1‑94 (MQ=60)

      GCATAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCT                                                                                        <  SRR4302534.572333/94‑1 (MQ=60)

      GCATAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCT                                                                                        <  SRR4302534.5240731/94‑1 (MQ=60)

      GCATAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCT                                                                                        >  SRR4302534.1133204/1‑94 (MQ=60)

        ATAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGC                                                                                      <  SRR4302534.3198640/94‑1 (MQ=60)

         TAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCG                                                                                     <  SRR4302534.4171730/94‑1 (MQ=60)

         TAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCG                                                                                     >  SRR4302534.4128151/1‑94 (MQ=60)

         TAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCG                                                                                     <  SRR4302534.906741/94‑1 (MQ=60)

         TAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCG                                                                                     <  SRR4302534.1235134/94‑1 (MQ=60)

           AAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGA                                                                                   >  SRR4302534.6528617/1‑94 (MQ=60)

            AGATCGCATTGTGTGCTTTCGGAAGCGCGATGGGCATGTTGTTGTCTTTATGGGCGATGGTATTCATGATG‑CGCCCGCCTTGCGCGATGCGGAT                                                                                  <  SRR4302534.1501424/94‑1 (MQ=40)

             GAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATA                                                                                 >  SRR4302534.2350586/1‑94 (MQ=60)

              AACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATAT                                                                                <  SRR4302534.2326174/94‑1 (MQ=60)

              AACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATAT                                                                                >  SRR4302534.6126172/1‑94 (MQ=60)

               ACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATC                                                                               <  SRR4302534.484734/94‑1 (MQ=60)

                CGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCG                                                                              <  SRR4302534.3406490/94‑1 (MQ=60)

                CGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCG                                                                              <  SRR4302534.4833024/94‑1 (MQ=60)

                CGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCG                                                                              >  SRR4302534.2764280/1‑94 (MQ=60)

                 GCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGG                                                                             >  SRR4302534.5879127/1‑94 (MQ=60)

                    TTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCAT                                                                          >  SRR4302534.2574466/1‑94 (MQ=60)

                     TGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATT                                                                         >  SRR4302534.3633885/1‑94 (MQ=60)

                      GTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTT                                                                        <  SRR4302534.3635238/94‑1 (MQ=60)

                       TGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTC                                                                       <  SRR4302534.791447/94‑1 (MQ=60)

                          CCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGT                                                                    <  SRR4302534.3368366/94‑1 (MQ=60)

                           CTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTG                                                                   <  SRR4302534.1677596/94‑1 (MQ=60)

                           CTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTG                                                                   <  SRR4302534.3748567/94‑1 (MQ=60)

                           CTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTG                                                                   <  SRR4302534.2181821/94‑1 (MQ=60)

                             TACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGA                                                                 >  SRR4302534.1635586/1‑94 (MQ=60)

                             TACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGA                                                                 <  SRR4302534.2923211/94‑1 (MQ=60)

                             TACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGA                                                                 <  SRR4302534.1809745/94‑1 (MQ=60)

                               CTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACG                                                               >  SRR4302534.4553920/1‑94 (MQ=60)

                               CTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACG                                                               >  SRR4302534.6420300/1‑94 (MQ=60)

                                TGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGG                                                              >  SRR4302534.5464953/1‑94 (MQ=60)

                                TGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGG                                                              <  SRR4302534.5739760/94‑1 (MQ=60)

                                 GAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGG                                                             >  SRR4302534.3220502/1‑94 (MQ=60)

                                  AAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCG                                                            <  SRR4302534.4719802/94‑1 (MQ=60)

                                  AAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCG                                                            >  SRR4302534.5911646/1‑94 (MQ=60)

                                   AGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGC                                                           >  SRR4302534.1362800/1‑94 (MQ=60)

                                   AGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGC                                                           <  SRR4302534.2509370/94‑1 (MQ=60)

                                    GCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCG                                                          <  SRR4302534.2642415/94‑1 (MQ=60)

                                    GCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGCATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCG                                                          >  SRR4302534.2183179/1‑94 (MQ=60)

                                     CGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGG                                                         <  SRR4302534.343932/94‑1 (MQ=60)

                                     CGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGG                                                         >  SRR4302534.6506862/1‑94 (MQ=60)

                                      GCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGT                                                        <  SRR4302534.533681/94‑1 (MQ=60)

                                       CGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTA                                                       <  SRR4302534.282523/94‑1 (MQ=60)

                                       CGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTA                                                       <  SRR4302534.2179134/94‑1 (MQ=60)

                                        GAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAG                                                      <  SRR4302534.3416469/94‑1 (MQ=60)

                                        GAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAG                                                      >  SRR4302534.2744351/1‑94 (MQ=60)

                                         GAGGGCATGTGGTTTGCTTTAAGGGGGAATGTAATAATGATGCCGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAG                                                      <  SRR4302534.3666889/94‑1 (MQ=55)

                                         AAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGA                                                     >  SRR4302534.230947/1‑94 (MQ=60)

                                         AAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGA                                                     >  SRR4302534.6641822/1‑94 (MQ=60)

                                         AAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGA                                                     >  SRR4302534.6024174/1‑94 (MQ=60)

                                           GGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATA                                                   >  SRR4302534.1137218/1‑94 (MQ=60)

                                           GGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATA                                                   <  SRR4302534.1829510/94‑1 (MQ=60)

                                           GGGCATGTGGGTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATA                                                   <  SRR4302534.210797/94‑1 (MQ=60)

                                            GGCATGTGGTTGGCTTTATGGGCGATGTTATTAATGATG‑CGCCCGCCTTGCTCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATAT                                                  <  SRR4302534.2207215/94‑1 (MQ=60)

                                            GGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATAT                                                  <  SRR4302534.3678098/94‑1 (MQ=60)

                                             GCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATT                                                 >  SRR4302534.3161676/1‑94 (MQ=60)

                                              CATGTGGTTGTCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTG                                                <  SRR4302534.3723451/94‑1 (MQ=60)

                                               ATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGC                                               >  SRR4302534.4808935/1‑94 (MQ=60)

                                                 GTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCC                                             >  SRR4302534.5066555/1‑94 (MQ=60)

                                                  TGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCG                                            >  SRR4302534.3915581/1‑94 (MQ=60)

                                                   GGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGT                                           <  SRR4302534.1462594/94‑1 (MQ=60)

                                                      TGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAA                                        <  SRR4302534.5150453/94‑1 (MQ=60)

                                                       GGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAG                                       >  SRR4302534.4658447/1‑94 (MQ=60)

                                                       GGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAG                                       >  SRR4302534.6084591/1‑94 (MQ=60)

                                                            TATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCT                                  <  SRR4302534.2906537/94‑1 (MQ=60)

                                                            TATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCT                                  <  SRR4302534.2079069/94‑1 (MQ=60)

                                                            TATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCT                                  <  SRR4302534.3910216/94‑1 (MQ=60)

                                                             ATGGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTG                                 >  SRR4302534.3885815/1‑94 (MQ=60)

                                                             ATGGGCGATGGTATTAATGAGG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTG                                 <  SRR4302534.3077466/94‑1 (MQ=60)

                                                               GGGCGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGAT                               <  SRR4302534.5590204/94‑1 (MQ=60)

                                                                  CGATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATC                            <  SRR4302534.1970747/94‑1 (MQ=60)

                                                                   GATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCA                           >  SRR4302534.1676205/1‑94 (MQ=60)

                                                                    ATGGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCAT                          >  SRR4302534.1685246/1‑94 (MQ=60)

                                                                      TGTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCC                        <  SRR4302534.1102291/94‑1 (MQ=60)

                                                                       GTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCT                       <  SRR4302534.3519693/94‑1 (MQ=60)

                                                                       GTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCT                       >  SRR4302534.5690675/1‑94 (MQ=60)

                                                                       GTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCT                       <  SRR4302534.4780334/94‑1 (MQ=60)

                                                                       GTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCT                       <  SRR4302534.5533241/94‑1 (MQ=60)

                                                                       GTATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCT                       <  SRR4302534.3045683/94‑1 (MQ=60)

                                                                        TATTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTG                      >  SRR4302534.6406151/1‑94 (MQ=60)

                                                                          TTAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCT                    <  SRR4302534.2043165/94‑1 (MQ=60)

                                                                           TAATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTG                   >  SRR4302534.2576890/1‑94 (MQ=60)

                                                                             ATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGA                 >  SRR4302534.3991725/1‑94 (MQ=60)

                                                                             ATGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGGAGATATTGGCCGTGAAGCGGCTGATATCATCCTGCTGGA                 >  SRR4302534.3694234/1‑94 (MQ=60)

                                                                              TGATG‑CTCCCGCCTTGCGCACTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAA                >  SRR4302534.1042146/1‑94 (MQ=60)

                                                                              TGATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAA                >  SRR4302534.6633638/1‑94 (MQ=60)

                                                                                ATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAA              >  SRR4302534.5366962/1‑94 (MQ=60)

                                                                                ATG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAA              >  SRR4302534.6215307/1‑94 (MQ=60)

                                                                                 TG‑CGCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAA             >  SRR4302534.1107342/1‑94 (MQ=60)

                                                                                     GCCCGCCTTGCGCGGTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAGC          <  SRR4302534.410691/94‑1 (MQ=60)

                                                                                     GCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAGC          <  SRR4302534.5647049/94‑1 (MQ=60)

                                                                                     GCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAGC          >  SRR4302534.4458232/1‑94 (MQ=60)

                                                                                     GCCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAGC          >  SRR4302534.3239763/1‑94 (MQ=60)

                                                                                      CCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAGCC         <  SRR4302534.567373/94‑1 (MQ=60)

                                                                                      CCCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAGCC         >  SRR4302534.6090590/1‑94 (MQ=60)

                                                                                       CCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAGCCT        <  SRR4302534.1591593/94‑1 (MQ=60)

                                                                                       CCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAGCCT        >  SRR4302534.3540428/1‑94 (MQ=60)

                                                                                       CCGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAGCCT        <  SRR4302534.4552850/94‑1 (MQ=60)

                                                                                        CGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAGCCTG       <  SRR4302534.1492530/94‑1 (MQ=60)

                                                                                        CGCCTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAGCCTG       <  SRR4302534.3714807/94‑1 (MQ=60)

                                                                                           CTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAGCCTGATG    >  SRR4302534.1288226/1‑94 (MQ=60)

                                                                                           CTTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAGCCTGATG    >  SRR4302534.2782857/1‑94 (MQ=60)

                                                                                            TTGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAGCCTGATGG   >  SRR4302534.486459/1‑94 (MQ=60)

                                                                                             TGCGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAGCCTGATGGT  <  SRR4302534.5303366/94‑1 (MQ=60)

GCCGATGCATAAAGAACGCATTGTGACCTTACTGAAGCGCGAAGGGCATGTGGTTGGCTTTATGGGCGATGGTATTAATGATG‑CGCCCGCCTTACGCGCTGCGGATATCGGCATTTCTGTGGACGGCGCGGTAGATATTGCCCGTGAAGCGGCTGATATCATCCTGCTGGAAAAAAGCCTGATGGT  >  NC_000913/4467052‑4467237

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`